View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17199_low_20 (Length: 344)

Name: NF17199_low_20
Description: NF17199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17199_low_20
NF17199_low_20
[»] chr6 (12 HSPs)
chr6 (18-332)||(896936-897250)
chr6 (44-186)||(1193133-1193275)
chr6 (68-188)||(1182207-1182330)
chr6 (86-187)||(1237479-1237580)
chr6 (205-279)||(1182389-1182464)
chr6 (207-265)||(896558-896617)
chr6 (111-188)||(793878-793956)
chr6 (279-332)||(1237201-1237254)
chr6 (279-332)||(1193486-1193539)
chr6 (97-151)||(1176683-1176737)
chr6 (279-332)||(1182508-1182561)
chr6 (204-249)||(1237368-1237414)
[»] chr4 (2 HSPs)
chr4 (81-186)||(10203758-10203863)
chr4 (279-332)||(12857204-12857257)
[»] scaffold0302 (1 HSPs)
scaffold0302 (279-332)||(19741-19794)
[»] chr7 (1 HSPs)
chr7 (279-322)||(20257183-20257226)


Alignment Details
Target: chr6 (Bit Score: 315; Significance: 1e-177; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 18 - 332
Target Start/End: Original strand, 896936 - 897250
Alignment:
Q  18 gtttagaagtttgatatgacaatagatattttgttctaactcacaagtattttgttccaacacttataaaaaacagtattgtgccttctttgttgcattg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  896936 gtttagaagtttgatatgacaatagatattttgttctaactcacaagtattttgttccaacacttataaaaaacagtattgtgccttctttgttgcattg 897035  T
Q  118 tggatgtatatggtttcttagaaattttttacttgctctctaatgagtatgtggttaagaaaatgtgataagtgctctctagtgagcatattgaatactt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  897036 tggatgtatatggtttcttagaaattttttacttgctctctaatgagtatgtggttaagaaaatgtgataagtgctctctagtgagcatattgaatactt 897135  T
Q  218 aggatatgttattgcatattgagtacaaatggggttttggatgagatgctggagtccttgattttaggcctaagatttgttattggtagtgctctggtgt 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  897136 aggatatgttattgcatattgagtacaaatggggttttggatgagatgctggagtccttgattttaggcctaagatttgttattggtagtgctctggtgt 897235  T
Q  318 gttattaggtgatga 332  Q
    |||||||||||||||    
T  897236 gttattaggtgatga 897250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 44 - 186
Target Start/End: Original strand, 1193133 - 1193275
Alignment:
Q  44 tattttgttctaactcacaagtattttgttccaacacttataaaaaacagtattgtgccttctttgttgcattgtggatgtatatggtttcttagaaatt 143  Q
    |||||||||| || || |||||||||||||||||||||||||||  |||||| |||||||||||| |||||| || |||| ||||| ||||| |||| ||    
T  1193133 tattttgttccaagtcccaagtattttgttccaacacttataaattacagtaatgtgccttctttattgcatcgtagatgaatatgatttctaagaattt 1193232  T
Q  144 ttttacttgctctctaatgagtatgtggttaagaaaatgtgat 186  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  1193233 ttttacttgctctctaatgagtatgtggttaagaaaatgtgat 1193275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 68 - 188
Target Start/End: Original strand, 1182207 - 1182330
Alignment:
Q  68 tttgttccaacacttataaaaaacagtattgtgccttctttgttgcattgtggatgtatatggtttcttagaaattttttacttgctct---ctaatgag 164  Q
    ||||||||||||||||||||| || ||| |||||||||||| ||| |||||||||||||||||||||| |||| |||||||||||||||   |||||||     
T  1182207 tttgttccaacacttataaaataccgtactgtgccttctttattgtattgtggatgtatatggtttctaagaatttttttacttgctctctactaatgaa 1182306  T
Q  165 tatgtggttaagaaaatgtgataa 188  Q
    ||||||||||||||||||||||||    
T  1182307 tatgtggttaagaaaatgtgataa 1182330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 86 - 187
Target Start/End: Complemental strand, 1237580 - 1237479
Alignment:
Q  86 aaaaacagtattgtgccttctttgttgcattgtggatgtatatggtttcttagaaattttttacttgctctctaatgagtatgtggttaagaaaatgtga 185  Q
    |||||| ||| || ||||||||| |||||||||||||||||||||||||| |||| | |||||||||| |||||||||||||||||||||||||||||||    
T  1237580 aaaaactgtactgcgccttctttattgcattgtggatgtatatggtttctaagaattattttacttgcactctaatgagtatgtggttaagaaaatgtga 1237481  T
Q  186 ta 187  Q
    ||    
T  1237480 ta 1237479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 205 - 279
Target Start/End: Original strand, 1182389 - 1182464
Alignment:
Q  205 atattgaatacttaggatat-gttattgcatattgagtacaaatggggttttggatgagatgctggagtccttgat 279  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||  |||||||||||||    
T  1182389 atattgaatacttaggatattgttattgcatattgagtacaaatggggttttggatcagataatggagtccttgat 1182464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 207 - 265
Target Start/End: Original strand, 896558 - 896617
Alignment:
Q  207 attgaatacttaggatat-gttattgcatattgagtacaaatggggttttggatgagatg 265  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  896558 attgaatacttaggatattgttattgcatattgagtacaaatggggttttggatgagatg 896617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 111 - 188
Target Start/End: Complemental strand, 793956 - 793878
Alignment:
Q  111 tgcattgtggatgtatatggtttcttagaaa-ttttttacttgctctctaatgagtatgtggttaagaaaatgtgataa 188  Q
    |||||||||| |||||||||||||| ||||  ||||||||||||| | |||||| ||||||||||||||||||||||||    
T  793956 tgcattgtggttgtatatggtttctaagaatcttttttacttgctttttaatgaatatgtggttaagaaaatgtgataa 793878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 279 - 332
Target Start/End: Complemental strand, 1237254 - 1237201
Alignment:
Q  279 ttttaggcctaagatttgttattggtagtgctctggtgtgttattaggtgatga 332  Q
    ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||    
T  1237254 ttttatgcctaagatttgttattggtagtgctctggtgttttattaggtgatga 1237201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 279 - 332
Target Start/End: Original strand, 1193486 - 1193539
Alignment:
Q  279 ttttaggcctaagatttgttattggtagtgctctggtgtgttattaggtgatga 332  Q
    |||||||||||||||||||||| ||||||  |||||||||||||||||||||||    
T  1193486 ttttaggcctaagatttgttataggtagtattctggtgtgttattaggtgatga 1193539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 97 - 151
Target Start/End: Original strand, 1176683 - 1176737
Alignment:
Q  97 tgtgccttctttgttgcattgtggatgtatatggtttcttagaaattttttactt 151  Q
    |||||||||||| ||||||||||| |||||||||||||| |||| ||||||||||    
T  1176683 tgtgccttctttattgcattgtggttgtatatggtttctaagaatttttttactt 1176737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 279 - 332
Target Start/End: Original strand, 1182508 - 1182561
Alignment:
Q  279 ttttaggcctaagatttgttattggtagtgctctggtgtgttattaggtgatga 332  Q
    |||||||||||||||||| ||||| ||||| |||||||||||||||||| ||||    
T  1182508 ttttaggcctaagatttggtattgttagtgttctggtgtgttattaggtaatga 1182561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 204 - 249
Target Start/End: Complemental strand, 1237414 - 1237368
Alignment:
Q  204 catattgaatacttaggatat-gttattgcatattgagtacaaatgg 249  Q
    |||||||| |||||||||||| ||||||||||||||||| |||||||    
T  1237414 catattgagtacttaggatattgttattgcatattgagttcaaatgg 1237368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 6e-22; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 81 - 186
Target Start/End: Original strand, 10203758 - 10203863
Alignment:
Q  81 ttataaaaaacagtattgtgccttctttgttgcattgtggatgtatatggtttcttagaaattttttacttgctctctaatgagtatgtggttaagaaaa 180  Q
    |||||||| |||| | |||||||||||| || ||| || |||| ||||| ||||| |||| || ||||||||||||||||||||||||||||||| ||||    
T  10203758 ttataaaatacaggaatgtgccttctttttttcatcgtagatgaatatgatttctaagaatttgtttacttgctctctaatgagtatgtggttaaaaaaa 10203857  T
Q  181 tgtgat 186  Q
    ||||||    
T  10203858 tgtgat 10203863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 279 - 332
Target Start/End: Original strand, 12857204 - 12857257
Alignment:
Q  279 ttttaggcctaagatttgttattggtagtgctctggtgtgttattaggtgatga 332  Q
    |||||||||||||||||||||| ||||||| |||||||||||||||||||||||    
T  12857204 ttttaggcctaagatttgttataggtagtgttctggtgtgttattaggtgatga 12857257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0302 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold0302
Description:

Target: scaffold0302; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 279 - 332
Target Start/End: Original strand, 19741 - 19794
Alignment:
Q  279 ttttaggcctaagatttgttattggtagtgctctggtgtgttattaggtgatga 332  Q
    |||||| ||||||||||||||| ||||||| |||||||||||||||||||||||    
T  19741 ttttagacctaagatttgttataggtagtgttctggtgtgttattaggtgatga 19794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 279 - 322
Target Start/End: Complemental strand, 20257226 - 20257183
Alignment:
Q  279 ttttaggcctaagatttgttattggtagtgctctggtgtgttat 322  Q
    |||||||||||||||||||||| ||||||| ||| |||||||||    
T  20257226 ttttaggcctaagatttgttataggtagtgttctagtgtgttat 20257183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University