View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17199_low_27 (Length: 327)
Name: NF17199_low_27
Description: NF17199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17199_low_27 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 276; Significance: 1e-154; HSPs: 14)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 19 - 310
Target Start/End: Complemental strand, 2100060 - 2099769
Alignment:
| Q |
19 |
aaaatgcacggtcaatgataatcaaattcactagaaaacattttcatttactataagaatcacttagtatgtgtctagcatttcatccaaaacattcact |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
2100060 |
aaaatgcacggtcaatgataatcaaattcactacaaaacattttcatttactataagaatcacttagcatgtgtctagcttttcatccaaaacattcact |
2099961 |
T |
|
| Q |
119 |
tcaaaatattaaaatacaatggtgtttgtcaggtctcttgttttgttactaaaatttcttttcctttattcacttttcactttcacatttactacatgtt |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
2099960 |
tcaaaatattaaaatacaatggtgtttgtcaggtctcttgttttgttactaaaatttcttttcctgtattcacttttcactttcacatttactacatgtt |
2099861 |
T |
|
| Q |
219 |
ttcctcaaattcagccaaagtgtcatcaatatgaaagccatgccttgttgcaatttaaggaaggctttgtcatcaataacttagcctctgat |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2099860 |
ttcctcaaattcagccaaagtgtcatcaatatgaaagccatgccttgttgcaatttaaggaaggctttgtcatcaataacttagcctctgat |
2099769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 19 - 319
Target Start/End: Complemental strand, 2127322 - 2127020
Alignment:
| Q |
19 |
aaaatgcacggtcaatgataatcaaattcactagaaaacattttcatttactataagaatcacttagtatgtgtctagcatttcatccaaaacattcact |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | |
|
|
| T |
2127322 |
aaaatgcacggtcaatgataatcaaattcactacaaaacattttcatttactataagaatcacttactatgtgtctagcatttcatccaaaacattcagt |
2127223 |
T |
|
| Q |
119 |
tcaaaatattaaaata--caatggtgtttgtcaggtctcttgttttgttactaaaatttcttttcctttattcacttttcactttcacatttactacatg |
216 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
2127222 |
tcaaaatattaaaatatacaatggtgtttgtcaggtctcttgctttgttactaaaatttcttttcctgtattcacttttcactttcacatttactacatg |
2127123 |
T |
|
| Q |
217 |
ttttcctcaaattcagccaaagtgtcatcaatatgaaagccatgccttgttgcaatttaaggaaggctttgtcatcaataacttagcctctgatgatatt |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
2127122 |
ttttcctcaaattcagccaaagtgtcatcaatatgaaagccatgccttgttgcaatttaaggaaggctttgtcatcaataacttagcctctgatgatctt |
2127023 |
T |
|
| Q |
317 |
ctt |
319 |
Q |
| |
|
||| |
|
|
| T |
2127022 |
ctt |
2127020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 19 - 294
Target Start/End: Complemental strand, 2067233 - 2066958
Alignment:
| Q |
19 |
aaaatgcacggtcaatgataatcaaattcactagaaaacattttcatttactataagaatcacttagtatgtgtctagcatttcatccaaaacattcact |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
2067233 |
aaaatgcacggtcaatgataatcaaattcactagaaaacattttcatttactataagaattacttagtatgtgtctagcatttcatccaaaacattcagt |
2067134 |
T |
|
| Q |
119 |
tcaaaatattaaaatacaatggtgtttgtcaggtctcttgttttgttactaaaatttcttttcctttattcacttttcactttcacatttactacatgtt |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||| |
|
|
| T |
2067133 |
tcaaaatattaaaatacaatggtgtttgtcaggtctcttgttttgttactaaaatttcttttactgcattcacttttctgtttcacatttactacatgtt |
2067034 |
T |
|
| Q |
219 |
ttcctcaaattcagccaaagtgtcatcaatatgaaagccatgccttgttgcaatttaaggaaggctttgtcatcaa |
294 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2067033 |
ttcctcaaattcagccaaagtgtcatcaatatgaaagccatgccttgttgcaatttaaggaaggctttgtcatcaa |
2066958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 19 - 319
Target Start/End: Complemental strand, 2074342 - 2074033
Alignment:
| Q |
19 |
aaaatgcacggtcaatgataatcaaattcactagaaaacattttcatttactataagaatcacttagtatgtgtctagcatttcatccaaaacattcact |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2074342 |
aaaatgcacggtcaatgataatcaaattcactataaaacattttcatttactataagaatcacttagtatgtgtctagcatttcatccaaaacattcact |
2074243 |
T |
|
| Q |
119 |
t---------caaaatattaaaatacaatggtgtttgtcaggtctcttgttttgttactaaaatttcttttcctttattcacttttcactttcacattta |
209 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| ||| ||||| |||||| |
|
|
| T |
2074242 |
ttattcagttcaaaatattaaaatacaatggtgtttgtcaggtctcttgttttgttagtaaaatttctttttctttattcactcttctctttcgcattta |
2074143 |
T |
|
| Q |
210 |
ctacatgttttcctcaaattcagccaaagtgtcatcaatatgaaagccatgccttgttgcaatttaaggaaggctttgtcatcaataacttagcctctga |
309 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2074142 |
ctacatgttttcctcaaattcatccaaagtgtcatggtgatgaaagccatgccttgttgcaatttaaggaaggctttgtcatcaataacttagcctctga |
2074043 |
T |
|
| Q |
310 |
tgatattctt |
319 |
Q |
| |
|
|||| ||||| |
|
|
| T |
2074042 |
tgatcttctt |
2074033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 88 - 294
Target Start/End: Complemental strand, 2139857 - 2139651
Alignment:
| Q |
88 |
tgtgtctagcatttcatccaaaacattcacttcaaaatattaaaatacaatggtgtttgtcaggtctcttgttttgttactaaaatttcttttcctttat |
187 |
Q |
| |
|
||||||||||||||||||||||||| || ||||||||||| |||||||||||||||||| |||||| |||||||| |||||||||||||||||||| |
|
|
| T |
2139857 |
tgtgtctagcatttcatccaaaacacacagttcaaaatattcaaatacaatggtgtttgtatggtctcaagttttgtttgtaaaatttcttttcctttat |
2139758 |
T |
|
| Q |
188 |
tcacttttcactttcacatttactacatgttttcctcaaattcagccaaagtgtcatcaatatgaaagccatgccttgttgcaatttaaggaaggctttg |
287 |
Q |
| |
|
||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2139757 |
tcacttttctctttcacatttactacatctttacctcaaattcagccaaagtgtcatcaatatgaaagccatgccttgttgcaatttaaggaaggctttg |
2139658 |
T |
|
| Q |
288 |
tcatcaa |
294 |
Q |
| |
|
||||||| |
|
|
| T |
2139657 |
tcatcaa |
2139651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 88 - 319
Target Start/End: Complemental strand, 2136624 - 2136394
Alignment:
| Q |
88 |
tgtgtctagcatttcatccaaaacattcacttcaaaatattaaaatacaatggtgtttgtcaggtctcttgttttgttactaaaatttcttttcctttat |
187 |
Q |
| |
|
||||||||||||||||||||||| | | ||||||||||| |||||||||||||||||| |||||| ||||||||| ||| ||| |||||||| || |
|
|
| T |
2136624 |
tgtgtctagcatttcatccaaaagaccaatttcaaaatattcaaatacaatggtgtttgtgtggtctcatgttttgtttgtaattttttttttcctt-at |
2136526 |
T |
|
| Q |
188 |
tcacttttcactttcacatttactacatgttttcctcaaattcagccaaagtgtcatcaatatgaaagccatgccttgttgcaatttaaggaaggctttg |
287 |
Q |
| |
|
|||||| || |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2136525 |
tcacttctctctttcacatttactacatgtttacctcaaattcagccaaaatgtcatcaatatgaaagccatgccttgttgcaatttaaggaaggctttg |
2136426 |
T |
|
| Q |
288 |
tcatcaataacttagcctctgatgatattctt |
319 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| |
|
|
| T |
2136425 |
tcatcaataacttagcctctgatgatcttctt |
2136394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 136 - 304
Target Start/End: Complemental strand, 2115301 - 2115133
Alignment:
| Q |
136 |
aatggtgtttgtcaggtctcttgttttgttactaaaatttcttttcctttattcacttttcactttcacatttactacatgttttcctcaaattcagcca |
235 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
2115301 |
aatggtgtttgtcaggtctcttgttttgttactaaaatttcttttcctttattcacttttctctttcacatttactacatgttttcctcaaattcatcca |
2115202 |
T |
|
| Q |
236 |
aagtgtcatcaatatgaaagccatgccttgttgcaatttaaggaaggctttgtcatcaataacttagcc |
304 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2115201 |
aagtgtcatggtgatgaaagccatgccttgttgcaatttaaggaaggctttgtcatcaataacttagcc |
2115133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 70 - 306
Target Start/End: Original strand, 2690671 - 2690906
Alignment:
| Q |
70 |
tataagaatcacttagtatgtgtctagcatttcatccaaaacattcacttcaaaatattaaaatacaatggtgtttgtcaggtctcttgttttgttacta |
169 |
Q |
| |
|
|||||||| ||| ||||| ||||||||||||||||| |||| |||| | ||| |||||| ||||||||||||||||| ||||||||||||||||| || |
|
|
| T |
2690671 |
tataagaaccacctagtacgtgtctagcatttcatc-aaaattttcagattaaagtattaagatacaatggtgtttgtctggtctcttgttttgttagta |
2690769 |
T |
|
| Q |
170 |
aaatttcttttcctttattcacttttcactttcacatttactacatgttttcctcaaattcagccaaagtgtcatcaatatgaaagccatgccttgttgc |
269 |
Q |
| |
|
||||||||||||||||||||||| || || | ||||||| ||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
2690770 |
aaatttcttttcctttattcactattttctcttttatttactgcatgttttcctgaaattcagccaaagtgtcatccatatgaaagccatgccttgttgc |
2690869 |
T |
|
| Q |
270 |
aatttaaggaaggctttgtcatcaataacttagcctc |
306 |
Q |
| |
|
||||||||||||||||||| ||||||||| ||||||| |
|
|
| T |
2690870 |
aatttaaggaaggctttgttatcaataacctagcctc |
2690906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 69 - 286
Target Start/End: Complemental strand, 2058914 - 2058694
Alignment:
| Q |
69 |
ctataagaatcacttagtatgtgtctagcatttcatccaaaacattcacttcaaaatattaaaatacaat---ggtgtttgtcaggtctcttgttttgtt |
165 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| |||||| |||| |||||||||||| ||||||| |||||||||| |||||||||||||||| |
|
|
| T |
2058914 |
ctataagaaccacttagtatgtgtctagcatttcattcaaaactttcagctcaaaatattaagatacaatattggtgtttgtctggtctcttgttttgtt |
2058815 |
T |
|
| Q |
166 |
actaaaatttcttttcctttattcacttttcactttcacatttactacatgttttcctcaaattcagccaaagtgtcatcaatatgaaagccatgccttg |
265 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |||||||||||||| | ||||||||||||| || |
|
|
| T |
2058814 |
tgtaaaatttcttttcctttattcacttttcactttcacatttactacatgtttttctttaattaagccaaagtgtcatgatgatgaaagccatgctttc |
2058715 |
T |
|
| Q |
266 |
ttgcaatttaaggaaggcttt |
286 |
Q |
| |
|
|| |||||||||||||||||| |
|
|
| T |
2058714 |
ttacaatttaaggaaggcttt |
2058694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 65 - 306
Target Start/End: Original strand, 2244511 - 2244731
Alignment:
| Q |
65 |
tttactataagaatcacttagtatgtgtctagcatttcatccaaaacattcacttcaaaatattaaaatacaatggtgtttgtcaggtctcttgttttgt |
164 |
Q |
| |
|
|||| |||||||| ||||||||||||||||| |||||||||||||||||| | |||||||||||||||||||||||||| |
|
|
| T |
2244511 |
tttagtataagaaccacttagtatgtgtctaccatttcatccaaaacattgagttcaaaatattaaaatacaatggtgt--------------------- |
2244589 |
T |
|
| Q |
165 |
tactaaaatttcttttcctttattcacttttcactttcacatttactacatgttttcctcaaattcagccaaagtgtcatcaatatgaaagccatgcctt |
264 |
Q |
| |
|
|| |||||||| | |||||||||||| ||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || || |
|
|
| T |
2244590 |
tagtaaaatttatattcctttattcaattttctctttcacatttactacatgttttcatcaaattcagccaaagtgtcatcaatatgaaagccaagcttt |
2244689 |
T |
|
| Q |
265 |
gttgcaatttaaggaaggctttgtcatcaataacttagcctc |
306 |
Q |
| |
|
||||||||| ||| ||||||||||||| |||||||||||||| |
|
|
| T |
2244690 |
gttgcaattaaagcaaggctttgtcattaataacttagcctc |
2244731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 168 - 288
Target Start/End: Original strand, 1695639 - 1695756
Alignment:
| Q |
168 |
taaaatttcttttcctttattcacttttcactttcacatttactacatgttttcctcaaattcagccaaagtgtcatcaatatgaaagccatgccttgtt |
267 |
Q |
| |
|
|||| ||||||||||||||||| | ||| || |||||| ||||||||||||| | |||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
1695639 |
taaagtttcttttcctttattctttgttcttttccacatt---tacatgttttcctttagttcagccaaagtgtcatcaagatgaaagccatgccttgtt |
1695735 |
T |
|
| Q |
268 |
gcaatttaaggaaggctttgt |
288 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
1695736 |
acaatttaaggaaggctttgt |
1695756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 121 - 286
Target Start/End: Complemental strand, 2120016 - 2119851
Alignment:
| Q |
121 |
aaaatattaaaatacaatggtgtttgtcaggtctcttgttttgttactaaaatttcttttcctttattcacttttcactttcacatttactacatg-ttt |
219 |
Q |
| |
|
|||| ||||| ||| |||||||||| | ||||||||||||| ||| | | |||||||||||||| ||| | ||| |||||| | |||||||||| ||| |
|
|
| T |
2120016 |
aaaagattaagatagaatggtgtttctgtggtctcttgtttttttagtccagtttcttttcctttactcattgttctctttcataattactacatgtttt |
2119917 |
T |
|
| Q |
220 |
tcctcaaattcagccaaagtgtcatcaatatgaaagccatgccttgttgcaatttaaggaaggcttt |
286 |
Q |
| |
|
|||| |||||| |||||||||| | | ||| ||||||| ||||||||||||||||||||| |||| |
|
|
| T |
2119916 |
tcctttaattcaaccaaagtgtcgtatagatg-aagccataccttgttgcaatttaaggaagacttt |
2119851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 2058986 - 2058938
Alignment:
| Q |
19 |
aaaatgcacggtcaatgataatcaaattcactagaaaacattttcattt |
67 |
Q |
| |
|
||||||| ||||||||||||||||| ||||||| |||||||||| |||| |
|
|
| T |
2058986 |
aaaatgcccggtcaatgataatcaagttcactacaaaacatttttattt |
2058938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 28 - 67
Target Start/End: Complemental strand, 2136703 - 2136664
Alignment:
| Q |
28 |
ggtcaatgataatcaaattcactagaaaacattttcattt |
67 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
2136703 |
ggtcaatgataatcaagttcactagaaatcattttcattt |
2136664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 225 - 286
Target Start/End: Complemental strand, 24031912 - 24031851
Alignment:
| Q |
225 |
aaattcagccaaagtgtcatcaatatgaaagccatgccttgttgcaatttaaggaaggcttt |
286 |
Q |
| |
|
|||||||| || || ||||| ||||||||||||||||| |||||||| ||||||||| |||| |
|
|
| T |
24031912 |
aaattcagtcatagggtcatgaatatgaaagccatgccctgttgcaagttaaggaagacttt |
24031851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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