View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17199_low_31 (Length: 304)
Name: NF17199_low_31
Description: NF17199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17199_low_31 |
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Alignment Details
Target: chr5 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 3 - 287
Target Start/End: Complemental strand, 43142510 - 43142226
Alignment:
| Q |
3 |
gactgaaaatcaaatagaatggaacctgttctaaaccggcccagaccgcttccgaagcataatccggtgttttccaaataatggtttggtatatgaacct |
102 |
Q |
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| T |
43142510 |
gactgaaaatcaaatataatggaaccggttctaaaccggcccaaaccgcttccgaagcataattcggtgttttccaaataatggtttggtatatgaacct |
43142411 |
T |
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| Q |
103 |
taaccaaaaaatattgggttatatggtttggttaaccatgcacagcccattgatgaagacatgttatcattagtaccattggttttaataggttaaaaca |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43142410 |
taaccaaaaaatattgggttatatggtttggttaaccatgcacagcccattgatgaagacatgttatcattagtaccattggttttaataggttaaaaca |
43142311 |
T |
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| Q |
203 |
tattccggatgaagatatgtgatgatgtacaatattattagaccactctctttttctttcgttttctctttggtgtacactaaac |
287 |
Q |
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||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43142310 |
tattccggatgaagatatgtgatgaggtacaacattattagaccactctctttttctttcgttttctctttggtgtacactaaac |
43142226 |
T |
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