View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17199_low_32 (Length: 300)
Name: NF17199_low_32
Description: NF17199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17199_low_32 |
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| [»] chr7 (7 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 300; Significance: 1e-169; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 1 - 300
Target Start/End: Complemental strand, 6970223 - 6969924
Alignment:
| Q |
1 |
caacagtaggaagaatgaagttaggatcacaaggcatggaagtatccttacaaggacttggttgcatgagcatgtctgctttctatggccctcctaaacc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6970223 |
caacagtaggaagaatgaagttaggatcacaaggcatggaagtatccttacaaggacttggttgcatgagcatgtctgctttctatggccctcctaaacc |
6970124 |
T |
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| Q |
101 |
tcaaactgacatgattgctctcatccaccatgccatacaatctggtgtcacttttcttgatacctctgacatatatggccctcacaccaacgaactcctt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6970123 |
tcaaactgacatgattgctctcatccaccatgccatacaatctggtgtcacttttcttgatacctctgacatatatggccctcacaccaacgaactcctt |
6970024 |
T |
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| Q |
201 |
cttggaaaggttaccactttctcttcgctttcatttagttttgcgataactacaattgattttgacatgatctatatgaaatgaacttttaattgatgat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6970023 |
cttggaaaggttaccactttctcttcgctttcatttagttttgcgataactacaattgattttgacatgatctatatgaaatgaacttttaattgatgat |
6969924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 5 - 233
Target Start/End: Original strand, 6917964 - 6918192
Alignment:
| Q |
5 |
agtaggaagaatgaagttaggatcacaaggcatggaagtatccttacaaggacttggttgcatgagcatgtctgctttctatggccctcctaaacctcaa |
104 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || |
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| T |
6917964 |
agtaggaagaatgaagttaggatcacaaggcatggaagtgtccttacaaggacttggttgcatgagcatgtctgctttctatggtcctcctaaacctgaa |
6918063 |
T |
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| Q |
105 |
actgacatgattgctctcatccaccatgccatacaatctggtgtcacttttcttgatacctctgacatatatggccctcacaccaacgaactccttcttg |
204 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| | ||||| ||||||||||| ||| | ||||||| |
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| T |
6918064 |
cctgacatgattgctctcattcaccatgccatacaatctggtgtcacttttcttgatacttctgacttctatggacctcacaccaatgaagttcttcttg |
6918163 |
T |
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| Q |
205 |
gaaaggttaccactttctcttcgctttca |
233 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
6918164 |
gaaaggttaccactttctcttcgctttca |
6918192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 6922897 - 6922673
Alignment:
| Q |
1 |
caacagtaggaagaatgaagttaggatcacaaggcatggaagtatccttacaaggacttggttgcatgagcatgtctgctttctatggccctcctaaacc |
100 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
6922897 |
caacagtaggaagaatgaagttaggatcacaagggatggaagtgtccttacaaggacttggttgcatgagcatgtctgctttctatggtcctcctaaacc |
6922798 |
T |
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| Q |
101 |
tcaaactgacatgattgctctcatccaccatgccatacaatctggtgtcacttttcttgatacctctgacatatatggccctcacaccaacgaactcctt |
200 |
Q |
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| || |||| |||||| |||||||||||||||| |||||||||||||||||||||||||| || |||||||| ||||||||||||||||| ||| | ||| |
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| T |
6922797 |
tgaacctgatatgatttctctcatccaccatgctatacaatctggtgtcacttttcttgacacttctgacatttatggccctcacaccaatgaagttctt |
6922698 |
T |
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| Q |
201 |
cttggaaaggttaccactttctctt |
225 |
Q |
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||||||||||||||||||||||||| |
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| T |
6922697 |
cttggaaaggttaccactttctctt |
6922673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 6955315 - 6955539
Alignment:
| Q |
1 |
caacagtaggaagaatgaagttaggatcacaaggcatggaagtatccttacaaggacttggttgcatgagcatgtctgctttctatggccctcctaaacc |
100 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
6955315 |
caacagtaggaagaatgaagttaggatcacaagggatggaagtgtccttacaaggacttggttgcatgagcatgtctgctttctatggtcctcctaaacc |
6955414 |
T |
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| Q |
101 |
tcaaactgacatgattgctctcatccaccatgccatacaatctggtgtcacttttcttgatacctctgacatatatggccctcacaccaacgaactcctt |
200 |
Q |
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| || |||| |||||| |||||||||||||||| |||||||||||||||||||||||||| || |||||||| ||||||||||||||||| ||| | ||| |
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| T |
6955415 |
tgaacctgatatgatttctctcatccaccatgctatacaatctggtgtcacttttcttgacacttctgacatttatggccctcacaccaatgaagttctt |
6955514 |
T |
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| Q |
201 |
cttggaaaggttaccactttctctt |
225 |
Q |
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||||||||||||||||||||||||| |
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| T |
6955515 |
cttggaaaggttaccactttctctt |
6955539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 6918714 - 6918496
Alignment:
| Q |
1 |
caacagtaggaagaatgaagttaggatcacaaggcatggaagtatccttacaaggacttggttgcatgagcatgtctgctttctatggccctcctaaacc |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| || |
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| T |
6918714 |
caacagtaggaagaatgaagttaggatcacaagggatggaagtatccttacaaggacttggttgcatgagcatgtcagctttctatggtcctcctaagcc |
6918615 |
T |
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| Q |
101 |
tcaaactgacatgattgctctcatccaccatgccatacaatctggtgtcacttttcttgatacctctgacatatatggccctcacaccaacgaactcctt |
200 |
Q |
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| || |||| |||||| |||||||||||||||| |||||||||||||||||||||||||| || ||||| || ||||||||||||||||| ||| | ||| |
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| T |
6918614 |
tgaatctgatatgatttctctcatccaccatgctatacaatctggtgtcacttttcttgacacttctgatatttatggccctcacaccaatgaagttctt |
6918515 |
T |
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| Q |
201 |
cttggaaaggttaccactt |
219 |
Q |
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||||||||||||||||||| |
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| T |
6918514 |
cttggaaaggttaccactt |
6918496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 6923433 - 6923651
Alignment:
| Q |
1 |
caacagtaggaagaatgaagttaggatcacaaggcatggaagtatccttacaaggacttggttgcatgagcatgtctgctttctatggccctcctaaacc |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| || |
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| T |
6923433 |
caacagtaggaagaatgaagttaggatcacaagggatggaagtatccttacaaggacttggttgcatgagcatgtcagctttctatggtcctcctaagcc |
6923532 |
T |
|
| Q |
101 |
tcaaactgacatgattgctctcatccaccatgccatacaatctggtgtcacttttcttgatacctctgacatatatggccctcacaccaacgaactcctt |
200 |
Q |
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| || |||| |||||| |||||||||||||||| |||||||||||||||||||||||||| || ||||| || ||||| ||||||||||| ||| | ||| |
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| T |
6923533 |
tgaatctgatatgatttctctcatccaccatgctatacaatctggtgtcacttttcttgacacttctgatatttatggtcctcacaccaatgaagttctt |
6923632 |
T |
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| Q |
201 |
cttggaaaggttaccactt |
219 |
Q |
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||||||||||||||||||| |
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| T |
6923633 |
cttggaaaggttaccactt |
6923651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 5 - 190
Target Start/End: Complemental strand, 6923863 - 6923678
Alignment:
| Q |
5 |
agtaggaagaatgaagttaggatcacaaggcatggaagtatccttacaaggacttggttgcatgagcatgtctgctttctatggccctcctaaacctcaa |
104 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || |
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| T |
6923863 |
agtaggaagaatgaagttaggatcacaaggcatggaagtgtccttacaaggacttggttgcatgagcatgtctgctttctatggtcctcctaaacctgaa |
6923764 |
T |
|
| Q |
105 |
actgacatgattgctctcatccaccatgccatacaatctggtgtcacttttcttgatacctctgacatatatggccctcacaccaa |
190 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| | ||||| ||||||||||| |
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| T |
6923763 |
cctgacatgattgctctcattcaccatgccatacaatctggtgtcacttttcttgatacttctgacttctatggacctcacaccaa |
6923678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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