View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17199_low_33 (Length: 289)
Name: NF17199_low_33
Description: NF17199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17199_low_33 |
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Alignment Details
Target: chr1 (Bit Score: 256; Significance: 1e-142; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 272
Target Start/End: Original strand, 5391349 - 5391620
Alignment:
| Q |
1 |
ttgacaataatttgtttgtttagtgtaatttaccaacctcttctagcaagatatcctcttgtgtgtgatagaaattgggtgtgacaaggcgtggcacatc |
100 |
Q |
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| T |
5391349 |
ttgacaataatttgtttgtttagtttaatttaccaacctcttctagcaagatatcctcttgtgtgtgatagaaattgggtgtgacaaggcgtggcacatc |
5391448 |
T |
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| Q |
101 |
ctccgtgaaaggggactcatggggcttgatcttaccgactatttcaaaggatccaaagtagtgcttgattcccgtctgaagggatacatgacaaagattc |
200 |
Q |
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| T |
5391449 |
ctccgtgaaaggggactcatggggcttgatcttaccgactatttcaaaggatccaaagtagtgcttgattcccgtttgaagggacacatgacaaagattc |
5391548 |
T |
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| Q |
201 |
agagtatttgggatgagggctcgaaggacgttccttaacattgaaccgttaacttcgcagttttgagcctct |
272 |
Q |
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| T |
5391549 |
agagtatttgggatgagggctcgaaggacgttccttaacattgaaccgttaactttgcagttttgagcctct |
5391620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 32 - 272
Target Start/End: Original strand, 5395191 - 5395431
Alignment:
| Q |
32 |
accaacctcttctagcaagatatcctcttgtgtgtgatagaaattgggtgtgacaaggcgtggcacatcctccgtgaaaggggactcatggggcttgatc |
131 |
Q |
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| T |
5395191 |
accaacctcttctaacaagatatcctcctgtgtgtaatagaaattgggtgtgacaaggcgtggcacatcctccgtgaagggggactcatgggccttgatc |
5395290 |
T |
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| Q |
132 |
ttaccgactatttcaaaggatccaaagtagtgcttgattcccgtctgaagggatacatgacaaagattcagagtatttgggatgagggctcgaaggacgt |
231 |
Q |
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| T |
5395291 |
ttaccgatcgtttcgaaggatcctaggtagtgcttagttcctgtttgaagggacacatggcaaagattgagagtatttgggatgagggctcgaaggacgt |
5395390 |
T |
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| Q |
232 |
tccttaacattgaaccgttaacttcgcagttttgagcctct |
272 |
Q |
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| T |
5395391 |
tccttaacattgaaccgttaacttcgcagttttgagcctct |
5395431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 35 - 271
Target Start/End: Original strand, 5401341 - 5401577
Alignment:
| Q |
35 |
aacctcttctagcaagatatcctcttgtgtgtgatagaaattgggtgtgacaaggcgtggcacatcctccgtgaaaggggactcatggggcttgatctta |
134 |
Q |
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||||||||| | ||||||||||||| ||||| |||||||||||||||| | ||||||||||||||||| ||||| ||||||||||| || ||||||||| |
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| T |
5401341 |
aacctcttcgaacaagatatcctctaatgtgtaatagaaattgggtgtgtcgaggcgtggcacatcctctgtgaagggggactcatgaggtttgatctta |
5401440 |
T |
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| Q |
135 |
ccgactatttcaaaggatccaaagtagtgcttgattcccgtctgaagggatacatgacaaagattcagagtatttgggatgagggctcgaaggacgttcc |
234 |
Q |
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| T |
5401441 |
ccgatgatttcgaagggtcctacatagtgcttggcaccagtctgaagagacacatgggaaagatttggagcatttgggattagggcttgaaggacgttcc |
5401540 |
T |
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| Q |
235 |
ttaacattgaaccgttaacttcgcagttttgagcctc |
271 |
Q |
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| T |
5401541 |
tcaacatggcaccattcacctcacaattttgagcctc |
5401577 |
T |
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