View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17199_low_37 (Length: 269)
Name: NF17199_low_37
Description: NF17199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17199_low_37 |
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Alignment Details
Target: chr2 (Bit Score: 233; Significance: 1e-129; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 10 - 254
Target Start/End: Complemental strand, 39145166 - 39144922
Alignment:
| Q |
10 |
aagaaaatctcaaactgaccaaaacagctataaaataagttctggttaacaaaaagcttagcagattggactgaatagttcaaaagttgtcaaaccattt |
109 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39145166 |
aagaaaatctcaaactgaccaaaacagctataaaataagttctagttaacaaaaagcttagcagattggactgaatagttcaaaagttgtcaaaccattt |
39145067 |
T |
|
| Q |
110 |
gaaaaatagaagaaatacatataaaaagagatatatttgaagcctacttcaatgtcaaagcattaaccaagtgtacaaagctaataattacagataagta |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
39145066 |
gaaaaatagaagaaatacatataaaaagagatatatttgaagcctacttcaatttcaaagcattaaccaagtgtataaagctaataattacagataagta |
39144967 |
T |
|
| Q |
210 |
cggtttcctacctacaccaatatcttaatcataatatatatgaac |
254 |
Q |
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| T |
39144966 |
cggtttcctacctacaccaatatcttaatcataatatatatgaac |
39144922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 21 - 249
Target Start/End: Original strand, 39188401 - 39188637
Alignment:
| Q |
21 |
aaactgaccaaaacagctataaaataagttctggttaacaaaaagcttagcagattggactgaatagttcaaaagttgtcaaaccatttgaaaaatagaa |
120 |
Q |
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| T |
39188401 |
aaactgaccagaacagctataaaataagttctagttaacaaaaatcttagcagattggactgaatagttcaaaagttgtcaaaccatttgaaaaatagaa |
39188500 |
T |
|
| Q |
121 |
gaaatacatataaaa--agagatatatttgaagcctacttcaatgtcaaagcattaaccaagtgtacaaagctaataattacagataagtacggtttcct |
218 |
Q |
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| T |
39188501 |
gaaatacatataaaaagagagataaatttgaagtctacttcaatttcgaagcattaaccaagtgcatgaagc---tagttacagataagtagagtttcct |
39188597 |
T |
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| Q |
219 |
acctac---------accaatatcttaatcataatatata |
249 |
Q |
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| T |
39188598 |
acctacaaggctacaaccaatatcttaatcataatatata |
39188637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 21 - 97
Target Start/End: Original strand, 39425349 - 39425424
Alignment:
| Q |
21 |
aaactgaccaaaacagctataaaataagttctggttaacaaaaagcttagcagattggactgaatagttcaaaagtt |
97 |
Q |
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|||||| ||| ||||| |||||| |||||||||||||||||||| | |||||||| ||||||||| ||||||||||| |
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| T |
39425349 |
aaactgtccagaacagttataaa-taagttctggttaacaaaaaacatagcagatgggactgaattgttcaaaagtt |
39425424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 60 - 173
Target Start/End: Original strand, 39386437 - 39386551
Alignment:
| Q |
60 |
aaaaagcttagcagattggactgaatagttcaaaagttgtcaaaccatttgaaaaatagaagaaatacatataaaaagagatatattt-gaagcctactt |
158 |
Q |
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||||| || ||||||||| |||||||| ||||||| |||||||||||||| ||| ||||||| ||||||| || ||||||| |||| |||| ||| || |
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| T |
39386437 |
aaaaaactaagcagattgaactgaatatttcaaaatttgtcaaaccatttagaaactagaagagatacataaaaggagagataaatttcgaagtctaatt |
39386536 |
T |
|
| Q |
159 |
caatgtcaaagcatt |
173 |
Q |
| |
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|| | |||||||||| |
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| T |
39386537 |
cattttcaaagcatt |
39386551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 86
Target Start/End: Original strand, 39396322 - 39396376
Alignment:
| Q |
32 |
aacagctataaaataagttctggttaacaaaaagcttagcagattggactgaata |
86 |
Q |
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||||| |||||||||||||||| |||||||||| || || ||||||||||||||| |
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| T |
39396322 |
aacagatataaaataagttctgattaacaaaaaactgagtagattggactgaata |
39396376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 175
Target Start/End: Complemental strand, 39179673 - 39179556
Alignment:
| Q |
60 |
aaaaagcttagcagattggactgaatagttcaaaagttgtcaaaccatttgaaaaatagaagaaatacatataa--aaagagatatatttgaagcctact |
157 |
Q |
| |
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||||| || ||||||||| |||||| | |||| || || ||||||||||| ||||||||||| ||||||| || | ||||||| |||| ||| ||| | |
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| T |
39179673 |
aaaaaactaagcagattgaactgaacatttcacaatttatcaaaccatttagaaaatagaagagatacataaaaagagagagataaatttcaagtctaat |
39179574 |
T |
|
| Q |
158 |
tcaatgtcaaagcattaa |
175 |
Q |
| |
|
||| | |||||||||||| |
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|
| T |
39179573 |
tcattttcaaagcattaa |
39179556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 175
Target Start/End: Complemental strand, 39372130 - 39372024
Alignment:
| Q |
69 |
agcagattggactgaatagttcaaaagttgtcaaaccatttgaaaaatagaagaaatacatataaaaagagatatatttgaagcctacttcaatgtcaaa |
168 |
Q |
| |
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||||||||| |||||||| ||||||| ||||||||||| ||||||||||| ||||||| || ||||||| |||| ||| || ||||| | || || |
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| T |
39372130 |
agcagattgtactgaatatttcaaaaaaattcaaaccatttataaaatagaagagatacataaaaggagagataaatttcaagtctgcttcactttccaa |
39372031 |
T |
|
| Q |
169 |
gcattaa |
175 |
Q |
| |
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||||||| |
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|
| T |
39372030 |
gcattaa |
39372024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 60 - 175
Target Start/End: Complemental strand, 33563328 - 33563213
Alignment:
| Q |
60 |
aaaaagcttagcagattggactgaatagttcaaaagttgtcaaaccatttgaaaaatagaagaaatacatataaaaagagatatatttgaagcctacttc |
159 |
Q |
| |
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||||| || ||||||||| ||||| | |||| || |||||||||||||| ||||||||||| ||||||| || ||||||| |||| ||| ||| ||| |
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| T |
33563328 |
aaaaaactgagcagattgaactgaccatttcacaatttgtcaaaccatttagaaaatagaagagatacataaaatgagagataaatttcaagtctatttc |
33563229 |
T |
|
| Q |
160 |
aatgtcaaagcattaa |
175 |
Q |
| |
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| | |||||||||||| |
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|
| T |
33563228 |
attttcaaagcattaa |
33563213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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