View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17199_low_4 (Length: 613)
Name: NF17199_low_4
Description: NF17199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17199_low_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 580; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 580; E-Value: 0
Query Start/End: Original strand, 19 - 606
Target Start/End: Complemental strand, 3094495 - 3093908
Alignment:
| Q |
19 |
tgtcacacataaatgaaattcatatgcatatactaagtgtatattttaccttccaagcatcataacagtggcttgaggattagttccaggagaatgatta |
118 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3094495 |
tgtcacacacaaatgaaattcatatgcatatactaactgtatattttaccttccaagcatcataacagtggcttgaggattagttccaggagaatgatta |
3094396 |
T |
|
| Q |
119 |
aaggtagaaccgtcgattacgcgcaatgcgtggacaccagcaaccttataatcactatcaacaaccctaccaacttgacaaccaccatgataatgccata |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3094395 |
aaggtagaaccgtcgattacgcgcaatgcgtggacaccagcaaccttataatcactatcaacaaccctaccaacttgacaaccaccatgataatgccata |
3094296 |
T |
|
| Q |
219 |
tagtcatcacagtgtctctacaaaattgttccaaagacattgaagtatttgtgtgtttaggcaataaatttactggtgaatttgctgtcatgttaagtag |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3094295 |
tagtcatcacagtgtctctacaaaattgttccaaagacattgaagtatttgtgtgtttaggcaataaatttactggtgaatttgctgtcatgttaagtag |
3094196 |
T |
|
| Q |
319 |
catagaaactgacatgtttgtgtatttaaatggagaaaatgcctttgaatctattattttctcaattgtgttcatgccttgtatgcatctttctaagtct |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3094195 |
catagaaactgacatgtttgtgtatttaaatggagaaaatgcctttgaatctattattttctcaattgtgttcatgccttgtatgcatctttctaagtct |
3094096 |
T |
|
| Q |
419 |
cttgggtcttggaagtagttaaatgttaccaaagggttctcatttggatcggtgtttcggagctccaaatgacccgttgaaattggccccaagatttttt |
518 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3094095 |
cttgggtcttggaagtagttaaatgttaccaaagggttctcatttggatcggtgtttcggagctccaaatgacccgttgaaattggccccaagatttttt |
3093996 |
T |
|
| Q |
519 |
ctagaatgaatccacccctgaatgcttcttggtccaggctctccatcctctctattgcttttgctatggcttctggggtcctttgctt |
606 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3093995 |
ctagaatgaatccacccctgaatgcttcttggtccaggctctccatcctctctattgcttttgctatggcttctggggtcctttgctt |
3093908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 23 - 590
Target Start/End: Complemental strand, 3085645 - 3085078
Alignment:
| Q |
23 |
acacataaatgaaattcatatgcatatactaagtgtatattttaccttccaagcatcataacagtggcttgaggattagttccaggagaatgattaaagg |
122 |
Q |
| |
|
||||| |||| ||||| ||||||||| ||||| | |||||||||||||||||||||||| | ||||||||||||||||||||||||||||| || |||| |
|
|
| T |
3085645 |
acacacaaattaaatttatatgcatagactaactatatattttaccttccaagcatcatgagagtggcttgaggattagttccaggagaatagttgaagg |
3085546 |
T |
|
| Q |
123 |
tagaaccgtcgattacgcgcaatgcgtggacaccagcaaccttataatcactatcaacaaccctaccaacttgacaaccaccatgataatgccatatagt |
222 |
Q |
| |
|
||||||||||||||||||||||||| | ||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
3085545 |
tagaaccgtcgattacgcgcaatgcatcgacaccaagaaccttataatcattatcaacaaccctaccaacttgacaaccaccatgataatgccatattgt |
3085446 |
T |
|
| Q |
223 |
catcacagtgtctctacaaaattgttccaaagacattgaagtatttgtgtgtttaggcaataaatttactggtgaatttgctgtcatgttaagtagcata |
322 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |||||| |||||||||||| |||| |
|
|
| T |
3085445 |
catcacagtgtctctacaaaattgttccaaagacattgaagtatttgtgtgcttaggcaataaatttacttgtgcatttgcaatcatgttaagtaacata |
3085346 |
T |
|
| Q |
323 |
gaaactgacatgtttgtgtatttaaatggagaaaatgcctttgaatctattattttctcaattgtgttcatgccttgtatgcatctttctaagtctcttg |
422 |
Q |
| |
|
|||| ||| ||||| ||||| ||||||||| ||| || ||||||||||||||||||||||||||| ||||||||||||||||| ||| |||||||||| |
|
|
| T |
3085345 |
gaaaatgatatgttattgtatctaaatggagcaaaagcatttgaatctattattttctcaattgtgcccatgccttgtatgcatcgttccaagtctcttg |
3085246 |
T |
|
| Q |
423 |
ggtcttggaagtagttaaatgttaccaaagggttctcatttggatcggtgtttcggagctccaaatgacccgttgaaattggccccaagattttttctag |
522 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||| || | | ||| || || |
|
|
| T |
3085245 |
ggtcctggaagtagttaaatgttaccaaagggttatcatttggatcagtgtttcggagctccaaatgacctgttgaaattggacctattactttctccag |
3085146 |
T |
|
| Q |
523 |
aatgaatccacccctgaatgcttcttggtccaggctctccatcctctctattgcttttgctatggctt |
590 |
Q |
| |
|
||||||||||||||| || ||||||||||| ||||| || |||||| ||||||||||||||||||||| |
|
|
| T |
3085145 |
aatgaatccaccccttaaagcttcttggtctaggctttctatcctccctattgcttttgctatggctt |
3085078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 200 - 249
Target Start/End: Original strand, 42960045 - 42960094
Alignment:
| Q |
200 |
ccaccatgataatgccatatagtcatcacagtgtctctacaaaattgttc |
249 |
Q |
| |
|
||||||||||| ||||| ||||| |||||||||||||||||||| ||||| |
|
|
| T |
42960045 |
ccaccatgatagtgccaaatagtgatcacagtgtctctacaaaactgttc |
42960094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 178 - 222
Target Start/End: Complemental strand, 404934 - 404890
Alignment:
| Q |
178 |
aacaaccctaccaacttgacaaccaccatgataatgccatatagt |
222 |
Q |
| |
|
||||||||||||||| ||| ||||||||||||||||||||||| |
|
|
| T |
404934 |
aacaaccctaccaacaacacatccaccatgataatgccatatagt |
404890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University