View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17199_low_40 (Length: 256)
Name: NF17199_low_40
Description: NF17199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17199_low_40 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 68 - 256
Target Start/End: Complemental strand, 28216464 - 28216276
Alignment:
| Q |
68 |
atggtgtaaatggttggttacaaccattacaacttgacagcatcaattttagttgttacatcttaagtttaaagtttattatgatgcacgaaattaggag |
167 |
Q |
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| T |
28216464 |
atggtgtaaatggttggctacaaccattacaacttgacagcatcaattttagttgttacatcttaagtttaaagtttattatgatgcacgaaattaggag |
28216365 |
T |
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| Q |
168 |
tccttgggattataaatatgtttacaatcttagcatttggtaccacattacatactagaaaactcctatattattcttatcatttcatt |
256 |
Q |
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| T |
28216364 |
tccttaggattataaatatgtttacaatcttagcatttggtaccacattacatactagaaaactcctatattattcttattatttcatt |
28216276 |
T |
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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 239
Target Start/End: Original strand, 17134314 - 17134360
Alignment:
| Q |
193 |
aatcttagcatttggtaccacattacatactagaaaactcctatatt |
239 |
Q |
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| T |
17134314 |
aatcttagcatttgacaccacattacatattagaaaactcttatatt |
17134360 |
T |
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