View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17199_low_41 (Length: 250)
Name: NF17199_low_41
Description: NF17199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17199_low_41 |
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Alignment Details
Target: chr1 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 7 - 247
Target Start/End: Complemental strand, 29496276 - 29496036
Alignment:
| Q |
7 |
tagataatactagaattaccatgggaaatcaactggttcaatatttacttacggattcaactggttctaaaacaaatcagtagttcttgtgtttgctgat |
106 |
Q |
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| T |
29496276 |
tagacaatgctagaattaccatgggaaatcaactggttcaatatttacttaaggattcaactggttctaaaacaaatcagtagttcttgtgtttgctgat |
29496177 |
T |
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| Q |
107 |
aatctatagccaaacaattgnnnnnnnattccgaaacatggaaattttattaatacaaaaccagacccaacatcatagtgagaaaattaaggactcatat |
206 |
Q |
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| T |
29496176 |
aatctatagccaaacaattgtttttttattccgaaacatggaaattttattaatacaaaatcagacccaacatcatagtgagaaaattaaggactcatat |
29496077 |
T |
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| Q |
207 |
ctatgtctaatcagtaacattactttaaacttagcatcgca |
247 |
Q |
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| T |
29496076 |
ctatgtataatcagtaacattactttaaacttaccatcgca |
29496036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 35 - 247
Target Start/End: Complemental strand, 19844772 - 19844561
Alignment:
| Q |
35 |
tcaactggttcaatatttacttacggattcaactggttctaaaacaaatcagtagttcttgtgtttgctgataatctatagccaaacaattgnnnnnnna |
134 |
Q |
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||||||||||| ||||||||||| | ||||| |||||||||||||||||||||||||| |||| |||||| |||||||||||||||||||| | |
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| T |
19844772 |
tcaactggttcgatatttacttaatgtttcaattggttctaaaacaaatcagtagttctcgtgtctgctgaaaatctatagccaaacaattgtttttt-a |
19844674 |
T |
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| Q |
135 |
ttccgaaacatggaaattttattaatacaaaaccagacccaacatcatagtgagaaaattaaggactcatatctatgtctaatcagtaacattactttaa |
234 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
19844673 |
ttccgaaacatggaagttttattaatacaaaaccagacccaacatcatactgagaaaattaaggactcatatctatgtctaatcggtaacattactttaa |
19844574 |
T |
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| Q |
235 |
acttagcatcgca |
247 |
Q |
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||||||||||||| |
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| T |
19844573 |
acttagcatcgca |
19844561 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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