View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17199_low_43 (Length: 249)

Name: NF17199_low_43
Description: NF17199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17199_low_43
NF17199_low_43
[»] chr4 (23 HSPs)
chr4 (18-241)||(43823404-43823626)
chr4 (40-236)||(2828241-2828446)
chr4 (40-236)||(51040791-51040996)
chr4 (40-218)||(27626576-27626763)
chr4 (77-169)||(5485958-5486050)
chr4 (40-167)||(43778445-43778572)
chr4 (40-236)||(4520281-4520486)
chr4 (40-169)||(39085058-39085187)
chr4 (38-221)||(34460279-34460471)
chr4 (40-169)||(39190725-39190854)
chr4 (40-169)||(44992864-44992993)
chr4 (40-169)||(39922913-39923042)
chr4 (40-154)||(47942667-47942781)
chr4 (40-154)||(44792990-44793104)
chr4 (48-223)||(35997610-35997794)
chr4 (40-221)||(10371113-10371303)
chr4 (40-151)||(230492-230603)
chr4 (40-132)||(42879331-42879423)
chr4 (80-154)||(10767871-10767945)
chr4 (110-151)||(50133027-50133068)
chr4 (189-224)||(26397756-26397791)
chr4 (115-158)||(32653548-32653591)
chr4 (115-149)||(39294772-39294806)
[»] scaffold1041 (2 HSPs)
scaffold1041 (26-236)||(2721-2940)
scaffold1041 (40-142)||(2154-2252)
[»] chr8 (23 HSPs)
chr8 (26-236)||(25705341-25705560)
chr8 (40-236)||(31823306-31823511)
chr8 (40-236)||(33368815-33369020)
chr8 (38-236)||(37524912-37525119)
chr8 (26-236)||(25356391-25356610)
chr8 (40-236)||(33158712-33158917)
chr8 (48-236)||(25370590-25370787)
chr8 (48-236)||(461240-461437)
chr8 (40-236)||(25707131-25707336)
chr8 (40-236)||(33748388-33748593)
chr8 (40-231)||(32824106-32824306)
chr8 (77-236)||(38881493-38881660)
chr8 (40-236)||(25373452-25373657)
chr8 (40-218)||(1322162-1322349)
chr8 (40-169)||(40019212-40019341)
chr8 (48-155)||(24526960-24527067)
chr8 (38-236)||(9876392-9876599)
chr8 (38-236)||(42894830-42895031)
chr8 (77-170)||(12515177-12515270)
chr8 (115-162)||(28432352-28432399)
chr8 (45-154)||(8655908-8656017)
chr8 (63-151)||(38884761-38884849)
chr8 (189-225)||(9186476-9186512)
[»] chr7 (24 HSPs)
chr7 (40-236)||(33775464-33775669)
chr7 (49-236)||(2168664-2168860)
chr7 (77-236)||(38614622-38614790)
chr7 (40-221)||(3690206-3690396)
chr7 (40-236)||(46994716-46994921)
chr7 (38-236)||(23955115-23955322)
chr7 (48-231)||(36756718-36756910)
chr7 (48-231)||(36766242-36766434)
chr7 (45-155)||(47339837-47339947)
chr7 (40-169)||(30108621-30108750)
chr7 (40-169)||(45465090-45465219)
chr7 (77-236)||(33037787-33037955)
chr7 (48-231)||(36762515-36762707)
chr7 (38-147)||(4321092-4321201)
chr7 (48-235)||(40785379-40785575)
chr7 (40-154)||(8421472-8421586)
chr7 (69-151)||(11685563-11685645)
chr7 (40-154)||(35342481-35342595)
chr7 (40-169)||(46810761-46810889)
chr7 (77-165)||(34785022-34785110)
chr7 (77-165)||(34784132-34784220)
chr7 (69-152)||(6058393-6058476)
chr7 (116-154)||(34692669-34692707)
chr7 (110-151)||(25971806-25971847)
[»] chr3 (23 HSPs)
chr3 (40-236)||(33111897-33112102)
chr3 (38-236)||(48635203-48635410)
chr3 (40-236)||(45897106-45897311)
chr3 (47-155)||(33851045-33851153)
chr3 (55-230)||(23775489-23775673)
chr3 (45-243)||(2975521-2975728)
chr3 (40-236)||(23887254-23887459)
chr3 (40-236)||(1847475-1847680)
chr3 (40-169)||(37865440-37865569)
chr3 (38-226)||(40508547-40508744)
chr3 (40-155)||(18428805-18428918)
chr3 (59-139)||(51453878-51453958)
chr3 (38-236)||(31885572-31885778)
chr3 (77-155)||(45255576-45255654)
chr3 (77-227)||(30501210-30501369)
chr3 (40-156)||(24381800-24381917)
chr3 (80-221)||(40998611-40998761)
chr3 (69-151)||(5127371-5127453)
chr3 (110-151)||(5134626-5134667)
chr3 (185-222)||(18428951-18428988)
chr3 (77-154)||(26447847-26447924)
chr3 (170-227)||(26447942-26447999)
chr3 (189-225)||(7589502-7589538)
[»] chr5 (13 HSPs)
chr5 (40-236)||(40330345-40330550)
chr5 (38-236)||(38176686-38176893)
chr5 (38-236)||(38203910-38204117)
chr5 (38-236)||(33257590-33257797)
chr5 (40-236)||(32089755-32089960)
chr5 (38-229)||(32835930-32836130)
chr5 (45-236)||(43316841-43317041)
chr5 (48-236)||(35291112-35291309)
chr5 (40-236)||(18726621-18726823)
chr5 (40-169)||(42619345-42619474)
chr5 (48-156)||(24232216-24232324)
chr5 (128-165)||(1344724-1344761)
chr5 (198-230)||(24497896-24497928)
[»] chr1 (17 HSPs)
chr1 (40-236)||(31803530-31803735)
chr1 (40-236)||(46636821-46637026)
chr1 (38-221)||(44159139-44159331)
chr1 (40-221)||(6576950-6577140)
chr1 (37-231)||(42136079-42136282)
chr1 (40-156)||(5784786-5784902)
chr1 (40-222)||(33679315-33679506)
chr1 (38-155)||(45379139-45379256)
chr1 (40-156)||(35478143-35478259)
chr1 (115-165)||(25172945-25172995)
chr1 (40-153)||(27952422-27952535)
chr1 (80-221)||(47264220-47264370)
chr1 (40-169)||(11152601-11152730)
chr1 (170-236)||(18180674-18180740)
chr1 (40-119)||(18180556-18180635)
chr1 (170-221)||(35478282-35478333)
chr1 (69-151)||(43870238-43870320)
[»] chr2 (12 HSPs)
chr2 (40-231)||(42003325-42003525)
chr2 (37-236)||(37418599-37418807)
chr2 (38-236)||(42880641-42880848)
chr2 (40-169)||(28248081-28248210)
chr2 (40-156)||(11021589-11021705)
chr2 (40-154)||(41708351-41708465)
chr2 (40-231)||(40978-41177)
chr2 (48-143)||(33257-33352)
chr2 (176-236)||(35499-35559)
chr2 (40-222)||(15373732-15373923)
chr2 (115-162)||(38149928-38149975)
chr2 (77-169)||(11312944-11313036)
[»] scaffold0070 (1 HSPs)
scaffold0070 (81-236)||(57498-57658)
[»] chr6 (5 HSPs)
chr6 (40-169)||(17950617-17950746)
chr6 (40-222)||(30639667-30639858)
chr6 (40-154)||(4646137-4646251)
chr6 (80-221)||(29114621-29114771)
chr6 (47-119)||(35174454-35174526)


Alignment Details
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 18 - 241
Target Start/End: Complemental strand, 43823626 - 43823404
Alignment:
Q  18 ggatcaaccaaaaacggcttttaattgtgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgtt 117  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||    
T  43823626 ggatcaaccaaaaacgtcttttaattgtgcgaaataacaatttaatctttaaatttgtcaaatgtcaatcaagttagtcattctgttcaatcggg-cgtt 43823528  T
Q  118 aatggtgctgacgtgaccgttaacctctcacatgtcagatgtcacataggcattggctgataatagcaaacatttcaaatgaccaaattgattgatttgc 217  Q
    || |||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||    
T  43823527 aacggtgctgacgtgaccgttaacctctcacatgtcagatgtcacatagacattagctgataatagcaaacatttcaaatgaccaaattgattgatttgc 43823428  T
Q  218 agaaaatgttttggctttcatctc 241  Q
    ||||||||||||||||||| ||||    
T  43823427 agaaaatgttttggctttcttctc 43823404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 40 - 236
Target Start/End: Complemental strand, 2828446 - 2828241
Alignment:
Q  40 aattgtgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgtta 139  Q
    |||| ||||||||| |||||||||| || ||||| | |||||||||||||||||||| |||||||||| | | | ||||| |  |||||||||  |||||    
T  2828446 aattatgcgaaatatcaatttaatccttgaatttgttaaatgtcaatcaagttagtccttctgttcaaactgagtgttaacgaggctgacgtggtcgtta 2828347  T
Q  140 acctctcacatgtcagatgtcacataggca---------ttggctgataatagcaaacatttcaaatgaccaaattgattgatttgcagaaaatgttttg 230  Q
    ||||||||||||||||| | ||| ||||||         ||||| ||||||| |||||||||  || ||| |||||||||||||||||||||||||||||    
T  2828346 acctctcacatgtcagacgccacgtaggcagggactaatttggccgataataacaaacattttgaaggactaaattgattgatttgcagaaaatgttttg 2828247  T
Q  231 gctttc 236  Q
    ||||||    
T  2828246 gctttc 2828241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 40 - 236
Target Start/End: Original strand, 51040791 - 51040996
Alignment:
Q  40 aattgtgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgtta 139  Q
    |||| ||||||||| ||||| ||||  | ||||| | ||||||||||||||| |||| || ||||||| ||| || |||| || |||||||||||| |||    
T  51040791 aattatgcgaaatatcaattcaatccctgaatttgttaaatgtcaatcaagtcagtccttttgttcaaacggagcattaacggggctgacgtgaccatta 51040890  T
Q  140 acctctcacatgtcagatgtcacataggca---------ttggctgataatagcaaacatttcaaatgaccaaattgattgatttgcagaaaatgttttg 230  Q
    ||||||||||||||||||| ||||||||||         ||| | ||||| | ||||||||||||| ||| ||| |||||||||||||||||||||||||    
T  51040891 acctctcacatgtcagatgccacataggcaaggactaatttgtccgataaaaacaaacatttcaaaggactaaactgattgatttgcagaaaatgttttg 51040990  T
Q  231 gctttc 236  Q
    ||||||    
T  51040991 gctttc 51040996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 40 - 218
Target Start/End: Complemental strand, 27626763 - 27626576
Alignment:
Q  40 aattgtgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgtta 139  Q
    |||| ||||||||| ||||||||||  | ||||| | |||||||||||||||||||  |||||||||| ||| ||||||| || ||||||||||||||||    
T  27626763 aattatgcgaaatatcaatttaatccctgaatttgttaaatgtcaatcaagttagtacttctgttcaaacggagcgttaacggggctgacgtgaccgtta 27626664  T
Q  140 acctctcacatgtcagatgtcacataggca---------ttggctgataatagcaaacatttcaaatgaccaaattgattgatttgca 218  Q
     |||||||||||| ||| ||||| ||||||         ||||| ||||||| |||||||||| || ||| |||||||||||||||||    
T  27626663 gcctctcacatgttagacgtcacgtaggcaaggactaatttggccgataataacaaacatttcgaaggactaaattgattgatttgca 27626576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 77 - 169
Target Start/End: Complemental strand, 5486050 - 5485958
Alignment:
Q  77 aaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgttaacctctcacatgtcagatgtcacataggca 169  Q
    |||||||||||||||||||| ||| |||||| ||| ||||||| || ||||||||||||||||||||||||||||||||||||||| ||||||    
T  5486050 aaatgtcaatcaagttagtccttcagttcaaacggagcgttaacggggctgacgtgaccgttaacctctcacatgtcagatgtcacgtaggca 5485958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 40 - 167
Target Start/End: Original strand, 43778445 - 43778572
Alignment:
Q  40 aattgtgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgtta 139  Q
    |||| ||||||||| ||||||||||  ||||||| | |||||||||||||||||||| ||| |||||| |||  |||||| || ||||||||| ||||||    
T  43778445 aattatgcgaaatatcaatttaatccctaaatttgttaaatgtcaatcaagttagtccttcagttcaaacggaacgttaacggggctgacgtggccgtta 43778544  T
Q  140 acctctcacatgtcagatgtcacatagg 167  Q
    ||||||||||||||||||| ||| ||||    
T  43778545 acctctcacatgtcagatgccacgtagg 43778572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 40 - 236
Target Start/End: Complemental strand, 4520486 - 4520281
Alignment:
Q  40 aattgtgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgtta 139  Q
    |||| ||||||||| ||| ||| |  || ||||| | |||||||||||||||||||| |||||||||| ||| ||||||| || ||| | ||| || |||    
T  4520486 aattatgcgaaatatcaacttagttcttgaatttgttaaatgtcaatcaagttagtccttctgttcaaacggagcgttaacggagctaatgtggccttta 4520387  T
Q  140 acctctcacatgtcagatgtcacataggca---------ttggctgataatagcaaacatttcaaatgaccaaattgattgatttgcagaaaatgttttg 230  Q
    || |||||||||||||| | ||| || |||         ||||||||||||| ||||| ||||||| ||| |||| ||||||||||||||||||||||||    
T  4520386 acatctcacatgtcagacgccacgtaagcagagactaatttggctgataataacaaacttttcaaaggactaaatcgattgatttgcagaaaatgttttg 4520287  T
Q  231 gctttc 236  Q
    ||||||    
T  4520286 gctttc 4520281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 40 - 169
Target Start/End: Complemental strand, 39085187 - 39085058
Alignment:
Q  40 aattgtgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgtta 139  Q
    |||| ||||||||| ||||||||||  | ||||| | |||||||||||||||||||| ||| |||||| ||| ||||||| || ||||||||| ||||||    
T  39085187 aattatgcgaaatatcaatttaatccatgaatttgttaaatgtcaatcaagttagtccttcagttcaaacggagcgttaacggggctgacgtggccgtta 39085088  T
Q  140 acctctcacatgtcagatgtcacataggca 169  Q
    ||||||||||||||||| | ||| ||||||    
T  39085087 acctctcacatgtcagacgccacgtaggca 39085058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 38 - 221
Target Start/End: Original strand, 34460279 - 34460471
Alignment:
Q  38 ttaattgtgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgt 137  Q
    |||||| ||| ||||| ||||||||||  ||||||| | || |||| ||||| ||||||||||| ||||| | ||||||||| || | ||||||| ||||    
T  34460279 ttaattatgcaaaatatcaatttaatccctaaatttgttaattgtcgatcaatttagtcattctattcaaacagggcgttaaaggggatgacgtggccgt 34460378  T
Q  138 taacctctcacatgtcagatgtcacataggca---------ttggctgataatagcaaacatttcaaatgaccaaattgattgatttgcagaa 221  Q
    ||||||||||||||||| | | ||||||||||         ||||| ||||||| |||||||||| || ||| ||||||||||||||||||||    
T  34460379 taacctctcacatgtcatacgccacataggcagggactaatttggccgataataacaaacatttcgaaggactaaattgattgatttgcagaa 34460471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 40 - 169
Target Start/End: Complemental strand, 39190854 - 39190725
Alignment:
Q  40 aattgtgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgtta 139  Q
    |||| ||||||||| ||||||||||  | ||||| | |||||||||||||||||||| ||| |||||| ||| ||||||| || | ||||||| ||||||    
T  39190854 aattatgcgaaatatcaatttaatccgtgaatttgttaaatgtcaatcaagttagtccttcagttcaaacggagcgttaacggggttgacgtggccgtta 39190755  T
Q  140 acctctcacatgtcagatgtcacataggca 169  Q
    ||||||||||||||||| | ||| ||||||    
T  39190754 acctctcacatgtcagacgccacgtaggca 39190725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 40 - 169
Target Start/End: Original strand, 44992864 - 44992993
Alignment:
Q  40 aattgtgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgtta 139  Q
    |||| ||||||||| ||||||||||  | | ||| | |||||||||||||||||||| ||| |||||| ||| ||||||| || ||||||||| ||||||    
T  44992864 aattatgcgaaatatcaatttaatccctgagtttgttaaatgtcaatcaagttagtccttcagttcaaacggagcgttaacggggctgacgtggccgtta 44992963  T
Q  140 acctctcacatgtcagatgtcacataggca 169  Q
    ||||||||||||||||| | ||| ||||||    
T  44992964 acctctcacatgtcagacgccacgtaggca 44992993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 40 - 169
Target Start/End: Complemental strand, 39923042 - 39922913
Alignment:
Q  40 aattgtgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgtta 139  Q
    |||| ||||||||| ||||||||||  | ||||| | |||||||||||||||||||| ||| |||||| ||| | ||||| || ||||||||| ||||||    
T  39923042 aattatgcgaaatatcaatttaatccctgaatttgttaaatgtcaatcaagttagtccttcggttcaaacggagtgttaacggggctgacgtggccgtta 39922943  T
Q  140 acctctcacatgtcagatgtcacataggca 169  Q
    ||||||||| ||||||| | ||| ||||||    
T  39922942 acctctcacctgtcagacgccacgtaggca 39922913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 40 - 154
Target Start/End: Complemental strand, 47942781 - 47942667
Alignment:
Q  40 aattgtgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgtta 139  Q
    |||| ||||||||| |||||||||| || ||||| | || |||||||||| ||| |||||||| |||| |||| |||||| || ||||||||| ||||||    
T  47942781 aattatgcgaaatatcaatttaatccttgaatttgttaattgtcaatcaatttaatcattctgatcaaacgggccgttaacggggctgacgtggccgtta 47942682  T
Q  140 acctctcacatgtca 154  Q
    |||||| ||||||||    
T  47942681 acctcttacatgtca 47942667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 40 - 154
Target Start/End: Original strand, 44792990 - 44793104
Alignment:
Q  40 aattgtgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgtta 139  Q
    |||| ||||||||| ||||||||||  | ||||| | || |||||||||| |||||| ||||| |||| |||| |||||| || ||||||||| ||||||    
T  44792990 aattatgcgaaatatcaatttaatccctgaatttgttaattgtcaatcaatttagtccttctggtcaaacgggccgttaacggggctgacgtggccgtta 44793089  T
Q  140 acctctcacatgtca 154  Q
    |||||| ||||||||    
T  44793090 acctcttacatgtca 44793104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 48 - 223
Target Start/End: Complemental strand, 35997794 - 35997610
Alignment:
Q  48 gaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgttaacctctca 147  Q
    |||||| ||||||||||  | ||||| | || |||||||||| |||||| |||||||||| ||| || |||| || |||||||||  ||||||||||| |    
T  35997794 gaaatatcaatttaatccctgaatttgttaattgtcaatcaatttagtccttctgttcaaacggagcattaacggggctgacgtggtcgttaacctctta 35997695  T
Q  148 catgtcagatgtcacataggca---------ttggctgataatagcaaacatttcaaatgaccaaattgattgatttgcagaaaa 223  Q
    ||||||| | | ||| ||||||         ||||| ||||||| ||||||||||||| ||| || |||||||||||||| ||||    
T  35997694 catgtcatacgccacgtaggcagggactaatttggccgataataacaaacatttcaaaggactaacttgattgatttgcaaaaaa 35997610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 40 - 221
Target Start/End: Original strand, 10371113 - 10371303
Alignment:
Q  40 aattgtgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgtta 139  Q
    |||| ||||||||| |||||| |||  | ||||| | || |||||||||| |||||| ||||| |||| |||  |||||| || ||||||||| ||||||    
T  10371113 aattatgcgaaatatcaatttcatccctgaatttgttaattgtcaatcaatttagtccttctggtcaaacggcccgttaacggggctgacgtggccgtta 10371212  T
Q  140 acctctcacatgtcagatgtcacataggca---------ttggctgataatagcaaacatttcaaatgaccaaattgattgatttgcagaa 221  Q
    |||||| |||||||| | | ||| ||||||         ||||||||||||  |||||||||  || ||| ||||||||||||||||||||    
T  10371213 acctcttacatgtcatacgccacgtaggcagggactaatttggctgataattccaaacattttgaaggactaaattgattgatttgcagaa 10371303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 40 - 151
Target Start/End: Original strand, 230492 - 230603
Alignment:
Q  40 aattgtgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgtta 139  Q
    |||| ||||||||| ||| ||| ||| | |||||  || ||||| ||||| ||||||  ||||||||||  ||| ||||| |||||||||||| ||||||    
T  230492 aattatgcgaaatatcaaattagtctctgaatttggcatatgtcgatcaatttagtccctctgttcaatttgggtgttaacggtgctgacgtggccgtta 230591  T
Q  140 acctctcacatg 151  Q
    ||||||||||||    
T  230592 acctctcacatg 230603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 40 - 132
Target Start/End: Original strand, 42879331 - 42879423
Alignment:
Q  40 aattgtgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtg 132  Q
    |||| ||||||||| ||||||||||  | ||||| | ||||||||||||||| |||| ||| |||||| ||| ||||||| || |||||||||    
T  42879331 aattatgcgaaatatcaatttaatccatgaatttgttaaatgtcaatcaagtcagtccttcagttcaaacggagcgttaacggggctgacgtg 42879423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 80 - 154
Target Start/End: Complemental strand, 10767945 - 10767871
Alignment:
Q  80 tgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgttaacctctcacatgtca 154  Q
    |||||||||| |||||| ||||| |||| |||| | |||| || ||||||||| |||||||||||| ||||||||    
T  10767945 tgtcaatcaatttagtccttctggtcaaacgggccattaacggggctgacgtggccgttaacctcttacatgtca 10767871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 110 - 151
Target Start/End: Complemental strand, 50133068 - 50133027
Alignment:
Q  110 ggggcgttaatggtgctgacgtgaccgttaacctctcacatg 151  Q
    |||||||||| |||| ||||||||||||||||||||||||||    
T  50133068 ggggcgttaacggtgatgacgtgaccgttaacctctcacatg 50133027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 189 - 224
Target Start/End: Complemental strand, 26397791 - 26397756
Alignment:
Q  189 atttcaaatgaccaaattgattgatttgcagaaaat 224  Q
    ||||| ||||||||||||||||||||||||||||||    
T  26397791 atttccaatgaccaaattgattgatttgcagaaaat 26397756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 115 - 158
Target Start/End: Complemental strand, 32653591 - 32653548
Alignment:
Q  115 gttaatggtgctgacgtgaccgttaacctctcacatgtcagatg 158  Q
    ||||| ||||||||||||  ||||||||||||||||||||||||    
T  32653591 gttaacggtgctgacgtggtcgttaacctctcacatgtcagatg 32653548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 149
Target Start/End: Complemental strand, 39294806 - 39294772
Alignment:
Q  115 gttaatggtgctgacgtgaccgttaacctctcaca 149  Q
    |||||||||||||||||| ||||||||||||||||    
T  39294806 gttaatggtgctgacgtggccgttaacctctcaca 39294772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1041 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: scaffold1041
Description:

Target: scaffold1041; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 26 - 236
Target Start/End: Complemental strand, 2940 - 2721
Alignment:
Q  26 caaaaacggcttttaattgtgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgc 125  Q
    |||||||| ||||||||| || ||||||||||||||||| || ||||| |||||||||| ||||||||||| |||| ||||| ||| | |||||||||||    
T  2940 caaaaacgtcttttaattatgagaaataacaatttaatccttgaatttgtcaaatgtcattcaagttagtccttctattcaaccggagtgttaatggtgc 2841  T
Q  126 tgacgtgaccgttaacctctcacatgtcagatgtcacataggca---------ttggctgataatagcaaacatttcaaatgaccaaattgattgatttg 216  Q
    | |||||  ||||||||| |||||||||||| | ||||||||||         ||||| |||||||  |||||||||||| ||||| ||||||||||||     
T  2840 taacgtggtcgttaacctttcacatgtcagacgccacataggcagtgactaatttggccgataataataaacatttcaaaggaccatattgattgattta 2741  T
Q  217 cagaaaatgttttggctttc 236  Q
    ||||||||||||||| ||||    
T  2740 cagaaaatgttttggttttc 2721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1041; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 142
Target Start/End: Original strand, 2154 - 2252
Alignment:
Q  40 aattgtgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgtta 139  Q
    |||| ||||||||| ||| ||||||  ||||||| ||| | |||||||||||||||| || |||    |||||||||||| ||||||||||||  |||||    
T  2154 aattatgcgaaatatcaacttaatccctaaatttgtcagacgtcaatcaagttagtctttttgt----tcggggcgttaacggtgctgacgtggtcgtta 2249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 88; Significance: 2e-42; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 26 - 236
Target Start/End: Original strand, 25705341 - 25705560
Alignment:
Q  26 caaaaacggcttttaattgtgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgc 125  Q
    |||||||| || | |||| || ||||||||||||||||  || |||||||||||||||||||||||||||| |||| ||||| ||| | ||||||||||     
T  25705341 caaaaacgtctctcaattatgggaaataacaatttaattcttgaatttatcaaatgtcaatcaagttagtccttctattcaaccggagtgttaatggtgt 25705440  T
Q  126 tgacgtgaccgttaacctctcacatgtcagatgtcacataggca---------ttggctgataatagcaaacatttcaaatgaccaaattgattgatttg 216  Q
    |||||||   |||||||| |||||||||||| | ||||||||||         ||||||||||||| ||||||||||||| ||| ||||||||||||||     
T  25705441 tgacgtggttgttaacctttcacatgtcagacgccacataggcatggactaatttggctgataataacaaacatttcaaaggactaaattgattgattta 25705540  T
Q  217 cagaaaatgttttggctttc 236  Q
    || |||||||||||||||||    
T  25705541 cataaaatgttttggctttc 25705560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 40 - 236
Target Start/End: Complemental strand, 31823511 - 31823306
Alignment:
Q  40 aattgtgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgtta 139  Q
    |||| ||||||||| ||||||||||  ||||||| | |||||||||||||||||||| || ||||||| ||| ||||||| || ||||||||| ||||||    
T  31823511 aattatgcgaaatatcaatttaatccctaaatttgttaaatgtcaatcaagttagtccttatgttcaaacggagcgttaacggggctgacgtggccgtta 31823412  T
Q  140 acctctcacatgtcagatgtcacataggca---------ttggctgataatagcaaacatttcaaatgaccaaattgattgatttgcagaaaatgttttg 230  Q
    ||||||||||||||||| | ||| |||| |         |||| |||||||| |||||||||| || ||| |||||||||||||||||||||||||||||    
T  31823411 acctctcacatgtcagacgccacgtaggtagggactaatttggttgataataacaaacatttcgaaggactaaattgattgatttgcagaaaatgttttg 31823312  T
Q  231 gctttc 236  Q
    ||||||    
T  31823311 gctttc 31823306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 40 - 236
Target Start/End: Original strand, 33368815 - 33369020
Alignment:
Q  40 aattgtgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgtta 139  Q
    |||| ||||||||| |||||||||| || ||||| | |||||||||||||||||||| |||||||||| | | || ||||||||||||||||| ||||||    
T  33368815 aattatgcgaaatatcaatttaatccttgaatttgttaaatgtcaatcaagttagtccttctgttcaaccagagcattaatggtgctgacgtggccgtta 33368914  T
Q  140 acctctcacatgtcagatgtcacataggca---------ttggctgataatagcaaacatttcaaatgaccaaattgattgatttgcagaaaatgttttg 230  Q
    ||||||||||||||||| | ||| ||| ||         ||||| ||||||| ||||||||| | | ||||||||||||||||||||||||||| |||||    
T  33368915 acctctcacatgtcagacgccacgtagacaatgactaatttggccgataataacaaacattttagaggaccaaattgattgatttgcagaaaatattttg 33369014  T
Q  231 gctttc 236  Q
    ||||||    
T  33369015 gctttc 33369020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 38 - 236
Target Start/End: Original strand, 37524912 - 37525119
Alignment:
Q  38 ttaattgtgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgt 137  Q
    |||||| || |||||| |||| |||||| | ||||| | |||||||||||||||||||| |||||||||| ||| || |||||||  |||||||||||||    
T  37524912 ttaattatgtgaaatatcaatctaatctctgaatttgttaaatgtcaatcaagttagtccttctgttcaaacggagcattaatgggactgacgtgaccgt 37525011  T
Q  138 taacctctcacatgtcagatgtcacataggca---------ttggctgataatagcaaacatttcaaatgaccaaattgattgatttgcagaaaatgttt 228  Q
    ||||||||||||||||||| ||||| | ||||         ||||| ||||| | ||||||||||||| ||| ||| |||||||||||||||||||||||    
T  37525012 taacctctcacatgtcagacgtcacgttggcagggactaatttggccgataaaaacaaacatttcaaaggactaaactgattgatttgcagaaaatgttt 37525111  T
Q  229 tggctttc 236  Q
    ||||||||    
T  37525112 tggctttc 37525119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 26 - 236
Target Start/End: Original strand, 25356391 - 25356610
Alignment:
Q  26 caaaaacggcttttaattgtgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgc 125  Q
    |||||||| ||||||||| || ||||||||||||||||| ||  |||| |||||||||| |||||||||||||||| ||||| ||| | |||||||||||    
T  25356391 caaaaacgtcttttaattatgggaaataacaatttaatccttgtatttgtcaaatgtcactcaagttagtcattctattcaaccggagtgttaatggtgc 25356490  T
Q  126 tgacgtgaccgttaacctctcacatgtcagatgtcacataggca---------ttggctgataatagcaaacatttcaaatgaccaaattgattgatttg 216  Q
    | |||||  | ||||||| |||||||||||| | ||||||||||         || || | ||||| ||||||||||||| ||||| ||||||||||||     
T  25356491 taacgtggtcattaacctttcacatgtcagacgccacataggcagggactaattttgccgttaataacaaacatttcaaaggaccatattgattgattta 25356590  T
Q  217 cagaaaatgttttggctttc 236  Q
    ||||||||||||||| ||||    
T  25356591 cagaaaatgttttggttttc 25356610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 40 - 236
Target Start/End: Original strand, 33158712 - 33158917
Alignment:
Q  40 aattgtgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgtta 139  Q
    |||| ||||||||| |||||||||| || ||||| | |||||||||| ||||||||| ||||||||||  |  ||||||| || ||||||||| ||||||    
T  33158712 aattatgcgaaatatcaatttaatccttgaatttgttaaatgtcaattaagttagtccttctgttcaaaggaagcgttaacggggctgacgtggccgtta 33158811  T
Q  140 acctctcacatgtcagatgtcacataggca---------ttggctgataatagcaaacatttcaaatgaccaaattgattgatttgcagaaaatgttttg 230  Q
    |||||||||||||||||   ||| ||||||         ||||| ||||| | ||||||||||||| ||| ||| |||||||||||||||||||||||||    
T  33158812 acctctcacatgtcagacaccacgtaggcagagactaatttggccgataagaacaaacatttcaaaggactaaagtgattgatttgcagaaaatgttttg 33158911  T
Q  231 gctttc 236  Q
    ||||||    
T  33158912 gctttc 33158917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 48 - 236
Target Start/End: Original strand, 25370590 - 25370787
Alignment:
Q  48 gaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgttaacctctca 147  Q
    ||||||| |||||||||  | ||||| |||||||||||||||||||||| |||| ||||| | | | |||||||||| |||||||  ||||||||| |||    
T  25370590 gaaataaaaatttaatccctgaatttgtcaaatgtcaatcaagttagtccttctattcaaccagagtgttaatggtgttgacgtggtcgttaacctttca 25370689  T
Q  148 catgtcagatgtcacataggca---------ttggctgataatagcaaacatttcaaatgaccaaattgattgatttgcagaaaatgttttggctttc 236  Q
    |||||||   | ||||||||||         ||| | ||||||| ||||||||||||| |||||||||||||||||| ||||||||||||||||||||    
T  25370690 catgtcaagcgccacataggcagggactaatttgaccgataataacaaacatttcaaaggaccaaattgattgatttacagaaaatgttttggctttc 25370787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 48 - 236
Target Start/End: Original strand, 461240 - 461437
Alignment:
Q  48 gaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgttaacctctca 147  Q
    |||||||||||||||||  | ||||| | |||||||||||||||||||| || ||||||| ||| | ||||| || |||||| | |||||||||||||||    
T  461240 gaaataacaatttaatccctgaatttgttaaatgtcaatcaagttagtccttttgttcaaacggagtgttaacggggctgacatcaccgttaacctctca 461339  T
Q  148 catgtcagatgtcacataggca---------ttggctgataatagcaaacatttcaaatgaccaaattgattgatttgcagaaaatgttttggctttc 236  Q
    ||||||| | | ||||||||||         |||||  |||| | ||||||||||||| ||| ||| ||||||||||||||||||||| |||||||||    
T  461340 catgtcatacgccacataggcaaggactaatttggccaataaaaacaaacatttcaaaggactaaactgattgatttgcagaaaatgtcttggctttc 461437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 40 - 236
Target Start/End: Complemental strand, 25707336 - 25707131
Alignment:
Q  40 aattgtgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgtta 139  Q
    |||| ||||||||| ||| ||||||  | ||||| | | | ||||||||||||| || ||||||| ||   ||||||||| | |||||||||||||||||    
T  25707336 aattatgcgaaatatcaacttaatccctgaatttgtgagacgtcaatcaagttaatccttctgttaaactagggcgttaacgatgctgacgtgaccgtta 25707237  T
Q  140 acctctcacatgtcagatgtcacataggca---------ttggctgataatagcaaacatttcaaatgaccaaattgattgatttgcagaaaatgttttg 230  Q
    |||| ||||||||||||||||||||||| |         ||||| ||||||| ||||||||||||| ||||| ||||||||||||||||||  | |||||    
T  25707236 acctttcacatgtcagatgtcacataggtagagactaatttggccgataataacaaacatttcaaaggaccatattgattgatttgcagaattttttttg 25707137  T
Q  231 gctttc 236  Q
    ||||||    
T  25707136 gctttc 25707131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 40 - 236
Target Start/End: Original strand, 33748388 - 33748593
Alignment:
Q  40 aattgtgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgtta 139  Q
    |||| ||||||||| |||||||||   | ||||| | |||||||||||||||||||| || ||||| | ||| ||||||| || |||||||||  |||||    
T  33748388 aattatgcgaaatatcaatttaattcctgaatttgttaaatgtcaatcaagttagtccttatgttcgaacggagcgttaacggggctgacgtggtcgtta 33748487  T
Q  140 acctctcacatgtcagatgtcacataggca---------ttggctgataatagcaaacatttcaaatgaccaaattgattgatttgcagaaaatgttttg 230  Q
    |||| |||||||||||| | ||| ||||||         ||||| ||||||| |||||||||| || ||| ||||||||||||||||| |||||||||||    
T  33748488 acctttcacatgtcagacgccacgtaggcagagactaatttggccgataataacaaacatttcgaaggactaaattgattgatttgcaaaaaatgttttg 33748587  T
Q  231 gctttc 236  Q
    ||||||    
T  33748588 gctttc 33748593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 40 - 231
Target Start/End: Complemental strand, 32824306 - 32824106
Alignment:
Q  40 aattgtgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgtta 139  Q
    |||| ||||||||| ||||||||||  | ||||| | |||||||||||||||||| | |||||||||| ||| ||||||| || | ||||||||||| ||    
T  32824306 aattatgcgaaatatcaatttaatcactgaatttgttaaatgtcaatcaagttagcccttctgttcaaacggagcgttaacggggttgacgtgaccgcta 32824207  T
Q  140 acctctcacatgtcagatgtcacataggca---------ttggctgataatagcaaacatttcaaatgaccaaattgattgatttgcagaaaatgttttg 230  Q
    ||||||||||||||||| | ||| |||| |         ||||| ||||||| |||||||||| || ||| ||||||||||||||||||||| | |||||    
T  32824206 acctctcacatgtcagacgccacgtaggtagggactaatttggccgataataacaaacatttcgaaggactaaattgattgatttgcagaaatttttttg 32824107  T
Q  231 g 231  Q
    |    
T  32824106 g 32824106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 77 - 236
Target Start/End: Original strand, 38881493 - 38881660
Alignment:
Q  77 aaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgttaacctctcacatgtcagatgtcacataggcattggct- 175  Q
    |||||||||||||||||| | |||||||||| ||  ||||||| |||||||||||| |||||||| ||||||||| |||| | ||| |||||| || ||     
T  38881493 aaatgtcaatcaagttagcccttctgttcaaccgtagcgttaacggtgctgacgtggccgttaacttctcacatg-cagacgccacgtaggcaatgacta 38881591  T
Q  176 --------gataatagcaaacatttcaaatgaccaaattgattgatttgcagaaaatgttttggctttc 236  Q
            ||||||| |||||||||||||||| |||||||||||||||||||| |||||||||||||||    
T  38881592 atttggtcgataataacaaacatttcaaatgatcaaattgattgatttgcagagaatgttttggctttc 38881660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 40 - 236
Target Start/End: Complemental strand, 25373657 - 25373452
Alignment:
Q  40 aattgtgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgtta 139  Q
    |||| ||||||||| ||| |||||   | ||||| ||| | |||||||||||||||| ||||||| || | ||||||||| | || ||||||| ||||||    
T  25373657 aattatgcgaaatatcaacttaattcctgaatttgtcagacgtcaatcaagttagtccttctgttaaaccagggcgttaacgatgttgacgtggccgtta 25373558  T
Q  140 acctctcacatgtcagatgtcacataggca---------ttggctgataatagcaaacatttcaaatgaccaaattgattgatttgcagaaaatgttttg 230  Q
    |||| |||||||||||| | |||||||| |         ||| | ||||||| |||||||||||||||||||||||||||||| |||||||  |||||||    
T  25373557 acctttcacatgtcagacgccacataggtagagactaatttgtccgataatatcaaacatttcaaatgaccaaattgattgatatgcagaatttgttttg 25373458  T
Q  231 gctttc 236  Q
    ||||||    
T  25373457 gctttc 25373452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 40 - 218
Target Start/End: Complemental strand, 1322349 - 1322162
Alignment:
Q  40 aattgtgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgtta 139  Q
    |||| ||| ||||| ||||||||||  | ||||| | |||| |||||||||||||||||||||||||| ||| ||||||| || |||||||||  |||||    
T  1322349 aattatgcaaaatatcaatttaatccctgaatttgttaaatatcaatcaagttagtcattctgttcaaacggagcgttaacggggctgacgtggtcgtta 1322250  T
Q  140 acctctcacatgtcagatgtcacataggca---------ttggctgataatagcaaacatttcaaatgaccaaattgattgatttgca 218  Q
    ||||||||||||||||  | ||||||||||         ||||| ||||||| |||||||||  || ||| |||||||||||||||||    
T  1322249 acctctcacatgtcaggcgccacataggcaaggactaatttggccgataataacaaacattttgaaggactaaattgattgatttgca 1322162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 40 - 169
Target Start/End: Original strand, 40019212 - 40019341
Alignment:
Q  40 aattgtgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgtta 139  Q
    |||| ||||||||| ||||||||||  | ||||| | |||||||||||||||||||| ||| |||||| ||| ||||||| || |||| |||| ||||||    
T  40019212 aattatgcgaaatatcaatttaatccctgaatttgttaaatgtcaatcaagttagtccttcagttcaaacggagcgttaacggggctgtcgtggccgtta 40019311  T
Q  140 acctctcacatgtcagatgtcacataggca 169  Q
    ||||||||||||||||| | ||| ||||||    
T  40019312 acctctcacatgtcagacgccacgtaggca 40019341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 48 - 155
Target Start/End: Original strand, 24526960 - 24527067
Alignment:
Q  48 gaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgttaacctctca 147  Q
    |||||| ||||||||||  | ||||| | |||||||||||||||||||| |||||||||| ||| ||||||| || |||  |||||||||||||||||||    
T  24526960 gaaatatcaatttaatccctgaatttgttaaatgtcaatcaagttagtccttctgttcaaacggagcgttaacggggctatcgtgaccgttaacctctca 24527059  T
Q  148 catgtcag 155  Q
    ||||||||    
T  24527060 catgtcag 24527067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 38 - 236
Target Start/End: Complemental strand, 9876599 - 9876392
Alignment:
Q  38 ttaattgtgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgt 137  Q
    |||||| ||| ||||| |||||||||   | ||||| | ||||||||||||||||| || |||||||||| | | || |||| || ||||||||| ||||    
T  9876599 ttaattatgcaaaatatcaatttaatacctgaatttgttaaatgtcaatcaagttaatccttctgttcaaacagagctttaacggggctgacgtggccgt 9876500  T
Q  138 taacctctcacatgtcagatgtcacataggca---------ttggctgataatagcaaacatttcaaatgaccaaattgattgatttgcagaaaatgttt 228  Q
    ||||| ||||||||||||| | ||| ||| ||         ||||| ||||||| |||||||||  || ||| ||||||||||||||| |||||||||||    
T  9876499 taaccactcacatgtcagacgccacgtagacatggactaatttggccgataataacaaacattttgaaggactaaattgattgatttgtagaaaatgttt 9876400  T
Q  229 tggctttc 236  Q
    || |||||    
T  9876399 tgactttc 9876392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 38 - 236
Target Start/End: Original strand, 42894830 - 42895031
Alignment:
Q  38 ttaattgtgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgt 137  Q
    |||||| ||||||||| ||||||||||  | ||||| | |||||||||||||||||||| ||||||| ||  || ||||||| |   || ||||| ||||    
T  42894830 ttaattatgcgaaatatcaatttaatccctgaatttgttaaatgtcaatcaagttagtccttctgtttaaatggagcgttaacgagactaacgtggccgt 42894929  T
Q  138 taacctctcacatgtcagatgtcacataggca-----ttggctgataatagcaaacatttcaaatgaccaaattgattgatttgcagaaaatgttttggc 232  Q
    ||||||||||||||||  ||| ||   ||| |     ||||| ||||||| |||||||||| || ||| ||||||||||||||||||||||| ||||| |    
T  42894930 taacctctcacatgtc-catg-caggcaggaactaatttggccgataataacaaacatttcgaaggactaaattgattgatttgcagaaaatattttgac 42895027  T
Q  233 tttc 236  Q
    ||||    
T  42895028 tttc 42895031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 77 - 170
Target Start/End: Original strand, 12515177 - 12515270
Alignment:
Q  77 aaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgttaacctctcacatgtcagatgtcacataggcat 170  Q
    ||||||||||||| ||||||  || ||||||| || | ||||| |||||||||||| ||||||| ||||||||||||||||||| |||| ||||    
T  12515177 aaatgtcaatcaatttagtccctccgttcaattggagtgttaacggtgctgacgtggccgttaagctctcacatgtcagatgtcgcataagcat 12515270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 115 - 162
Target Start/End: Original strand, 28432352 - 28432399
Alignment:
Q  115 gttaatggtgctgacgtgaccgttaacctctcacatgtcagatgtcac 162  Q
    ||||| ||||||||||||  ||||||||||||||||||||||||||||    
T  28432352 gttaacggtgctgacgtggtcgttaacctctcacatgtcagatgtcac 28432399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 154
Target Start/End: Complemental strand, 8656017 - 8655908
Alignment:
Q  45 tgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgttaacctc 144  Q
    ||||||||| ||||||||||    ||||| | || |||||||||| ||| || ||||||||||  |||||||||| || ||||| |||  | ||||||||    
T  8656017 tgcgaaatatcaatttaatcccagaatttgttaattgtcaatcaatttaatccttctgttcaaatggggcgttaacggggctgatgtggtcattaacctc 8655918  T
Q  145 tcacatgtca 154  Q
    ||||||||||    
T  8655917 tcacatgtca 8655908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 151
Target Start/End: Complemental strand, 38884849 - 38884761
Alignment:
Q  63 tctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgttaacctctcacatg 151  Q
    ||||| ||||| ||| ||||||||||| ||| |   || ||||||| |||| ||||| |||||||| |||||||||||||| |||||||    
T  38884849 tctttgaatttgtcatatgtcaatcaatttaattcctccgttcaattggggtgttaacggtgctgatgtgaccgttaacctatcacatg 38884761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 225
Target Start/End: Complemental strand, 9186512 - 9186476
Alignment:
Q  189 atttcaaatgaccaaattgattgatttgcagaaaatg 225  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  9186512 atttccaatgactaaattgattgatttgcagaaaatg 9186476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 86; Significance: 3e-41; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 40 - 236
Target Start/End: Original strand, 33775464 - 33775669
Alignment:
Q  40 aattgtgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgtta 139  Q
    |||| ||||||||| ||||||||||  | ||||||| |||||||||||||||||||| |||||||||| ||| || |||| || |||||| |||||||||    
T  33775464 aattatgcgaaatatcaatttaatccctgaatttattaaatgtcaatcaagttagtccttctgttcaaacggagcattaacggggctgacatgaccgtta 33775563  T
Q  140 acctctcacatgtcagatgtcacataggca---------ttggctgataatagcaaacatttcaaatgaccaaattgattgatttgcagaaaatgttttg 230  Q
    |||| |||||||||||| | ||| ||||||         ||||| ||||||| |||||||||| || ||| |||||||||||||||||||||||||||||    
T  33775564 acctttcacatgtcagacgccacgtaggcagggactaatttggccgataataacaaacatttcgaaggactaaattgattgatttgcagaaaatgttttg 33775663  T
Q  231 gctttc 236  Q
    ||||||    
T  33775664 gctttc 33775669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 49 - 236
Target Start/End: Complemental strand, 2168860 - 2168664
Alignment:
Q  49 aaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgttaacctctcac 148  Q
    ||||| ||||||| || || ||||| | |||||||||||||||||||| |||||||||| ||| || |||| || ||||||||| |||||||||||||||    
T  2168860 aaatatcaatttagtccttgaatttgttaaatgtcaatcaagttagtccttctgttcaaacggagcattaacggggctgacgtggccgttaacctctcac 2168761  T
Q  149 atgtcagatgtcacataggca---------ttggctgataatagcaaacatttcaaatgaccaaattgattgatttgcagaaaatgttttggctttc 236  Q
    |||||||| | ||| ||||||         ||||| ||||||| | ||||||||||| ||| |||||||||||||||||||||||||||||||||||    
T  2168760 atgtcagacgccacgtaggcagtgactaatttggccgataataactaacatttcaaaggactaaattgattgatttgcagaaaatgttttggctttc 2168664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 77 - 236
Target Start/End: Complemental strand, 38614790 - 38614622
Alignment:
Q  77 aaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgttaacctctcacatgtcagatgtcacataggca------- 169  Q
    |||||||||||||||||||| || ||||||| ||| ||||||| || | ||||||| ||||||||||||||||||||||| | ||| ||||||           
T  38614790 aaatgtcaatcaagttagtccttatgttcaaacggagcgttaacggggttgacgtggccgttaacctctcacatgtcagacgccacgtaggcagggacta 38614691  T
Q  170 --ttggctgataatagcaaacatttcaaatgaccaaattgattgatttgcagaaaatgttttggctttc 236  Q
      ||||| ||||||| ||||||||||||| ||| |||||||||||||||||||||||||||||||||||    
T  38614690 atttggccgataataacaaacatttcaaaggactaaattgattgatttgcagaaaatgttttggctttc 38614622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 40 - 221
Target Start/End: Original strand, 3690206 - 3690396
Alignment:
Q  40 aattgtgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgtta 139  Q
    |||| ||||||||| |||||||||| || ||||| | |||||||||||||||||||| |||| ||||| ||| ||||||| || |||||||||| |||||    
T  3690206 aattatgcgaaatatcaatttaatccttgaatttgttaaatgtcaatcaagttagtccttctattcaaacggagcgttaacggggctgacgtgatcgtta 3690305  T
Q  140 acctctcacatgtcagatgtcacataggca---------ttggctgataatagcaaacatttcaaatgaccaaattgattgatttgcagaa 221  Q
    ||||||||||||||||  | ||| ||||||         ||||||||||||| |||||||||| || ||| ||||||||||||||||||||    
T  3690306 acctctcacatgtcaggcgccacgtaggcagggactaatttggctgataataacaaacatttcgaaggactaaattgattgatttgcagaa 3690396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 40 - 236
Target Start/End: Original strand, 46994716 - 46994921
Alignment:
Q  40 aattgtgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgtta 139  Q
    |||| ||||||||| ||||||||||  | ||||| | |||||||||||||||||||| |||||||||| ||| ||||||| || | |||||||  |||||    
T  46994716 aattatgcgaaatatcaatttaatccctgaatttgttaaatgtcaatcaagttagtccttctgttcaaacggagcgttaacgggggtgacgtggtcgtta 46994815  T
Q  140 acctctcacatgtcagatgtcacataggca---------ttggctgataatagcaaacatttcaaatgaccaaattgattgatttgcagaaaatgttttg 230  Q
    |||| |||||||||||| | ||| ||||||         ||||| |||| || |||||||||| || ||| |||||||||||||||||||||||||||||    
T  46994816 acctttcacatgtcagacgccacgtaggcagagactaatttggccgatagtaacaaacatttcgaaggactaaattgattgatttgcagaaaatgttttg 46994915  T
Q  231 gctttc 236  Q
    ||||||    
T  46994916 gctttc 46994921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 38 - 236
Target Start/End: Complemental strand, 23955322 - 23955115
Alignment:
Q  38 ttaattgtgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgt 137  Q
    |||||| || |||||| ||||||||||| | ||||| | ||||||||||||||||||||||| ||||||| |||  |||||| || ||||||||| | |     
T  23955322 ttaattatgtgaaatatcaatttaatctctgaatttgttaaatgtcaatcaagttagtcattatgttcaaacggaccgttaacggggctgacgtggcagc 23955223  T
Q  138 taacctctcacatgtcagatgtcacataggc---------attggctgataatagcaaacatttcaaatgaccaaattgattgatttgcagaaaatgttt 228  Q
    ||||||||||||||||||| | ||  |||||          || || ||||||| |||||||||| || ||| |||||||||||||||||||||||||||    
T  23955222 taacctctcacatgtcagacgccatgtaggcggggactaatttcgccgataataacaaacatttcgaaggactaaattgattgatttgcagaaaatgttt 23955123  T
Q  229 tggctttc 236  Q
    ||||||||    
T  23955122 tggctttc 23955115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 48 - 231
Target Start/End: Complemental strand, 36756910 - 36756718
Alignment:
Q  48 gaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgttaacctctca 147  Q
    |||||| ||||||||||  | ||||| | |||||||||||||||||| | |||||||||| ||| ||||||| ||  |||||||| ||||||||||||||    
T  36756910 gaaatatcaatttaatcgctgaatttgttaaatgtcaatcaagttagcccttctgttcaaacggagcgttaacgggactgacgtggccgttaacctctca 36756811  T
Q  148 catgtcagatgtcacataggca---------ttggctgataatagcaaacatttcaaatgaccaaattgattgatttgcagaaaatgttttgg 231  Q
    ||||||||| | ||||||| ||         ||||| ||||||| |||||||||| || ||| ||||||||||||||||||||| | ||||||    
T  36756810 catgtcagacgccacatagacagggactaatttggccgataataacaaacatttcgaaggactaaattgattgatttgcagaaatttttttgg 36756718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 48 - 231
Target Start/End: Complemental strand, 36766434 - 36766242
Alignment:
Q  48 gaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgttaacctctca 147  Q
    |||||| ||||||||||  | ||||| | |||||||||||||||||| | |||||||||| ||| ||||||| ||  |||||||| ||||||||||||||    
T  36766434 gaaatatcaatttaatcgctgaatttgttaaatgtcaatcaagttagcccttctgttcaaacggagcgttaacgggactgacgtggccgttaacctctca 36766335  T
Q  148 catgtcagatgtcacataggca---------ttggctgataatagcaaacatttcaaatgaccaaattgattgatttgcagaaaatgttttgg 231  Q
    ||||||||| | ||||||| ||         ||||| ||||||| |||||||||| || ||| ||||||||||||||||||||| | ||||||    
T  36766334 catgtcagacgccacatagacagggactaatttggccgataataacaaacatttcgaaggactaaattgattgatttgcagaaatttttttgg 36766242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 45 - 155
Target Start/End: Original strand, 47339837 - 47339947
Alignment:
Q  45 tgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgttaacctc 144  Q
    ||||||||| ||||||||||||| ||||| | ||||||||||||||||| || |||||||||| ||| | ||||| || ||||||||||| |||||||||    
T  47339837 tgcgaaatatcaatttaatctttgaatttgttaaatgtcaatcaagttaatccttctgttcaaacggagtgttaacggggctgacgtgactgttaacctc 47339936  T
Q  145 tcacatgtcag 155  Q
    |||||||||||    
T  47339937 tcacatgtcag 47339947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 40 - 169
Target Start/End: Original strand, 30108621 - 30108750
Alignment:
Q  40 aattgtgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgtta 139  Q
    |||| ||||||||| ||||||||||  | ||||| | |||||||||||||||||||| ||| |||||| ||| ||||||| || ||||||||| ||||||    
T  30108621 aattatgcgaaatatcaatttaatccctgaatttgttaaatgtcaatcaagttagtccttcagttcaaacggagcgttaacggggctgacgtggccgtta 30108720  T
Q  140 acctctcacatgtcagatgtcacataggca 169  Q
    ||||||||||||||||| | ||| ||||||    
T  30108721 acctctcacatgtcagacgccacgtaggca 30108750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 40 - 169
Target Start/End: Complemental strand, 45465219 - 45465090
Alignment:
Q  40 aattgtgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgtta 139  Q
    |||| ||||||||| ||||||||||  | ||||| | |||||||||||||||||||| ||| |||||| ||| ||||||| || ||||||||| ||||||    
T  45465219 aattatgcgaaatatcaatttaatccctgaatttgttaaatgtcaatcaagttagtccttcagttcaaacggagcgttaacggggctgacgtggccgtta 45465120  T
Q  140 acctctcacatgtcagatgtcacataggca 169  Q
    ||||||||||||||||| | ||| ||||||    
T  45465119 acctctcacatgtcagacgccacgtaggca 45465090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 77 - 236
Target Start/End: Original strand, 33037787 - 33037955
Alignment:
Q  77 aaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgttaacctctcacatgtcagatgtcacataggca------- 169  Q
    |||||||||||||||||||| |||||||||| ||| ||||||   | |||||||||  |||||||||||||||||||||| | ||| ||||||           
T  33037787 aaatgtcaatcaagttagtccttctgttcaaacggagcgttagcagggctgacgtggtcgttaacctctcacatgtcagacgccacgtaggcagagacta 33037886  T
Q  170 --ttggctgataatagcaaacatttcaaatgaccaaattgattgatttgcagaaaatgttttggctttc 236  Q
      ||||| ||||| | ||||||||||||| ||| ||| ||||||||||||| |||||||||||| ||||    
T  33037887 atttggccgataaaaacaaacatttcaaaggactaaactgattgatttgcataaaatgttttggttttc 33037955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 48 - 231
Target Start/End: Complemental strand, 36762707 - 36762515
Alignment:
Q  48 gaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgttaacctctca 147  Q
    |||||| |||||||| |  | ||||| | ||||||||||||||||||   |||||||||| ||| ||||||| ||  |||||||| ||||||||||||||    
T  36762707 gaaatatcaatttaacccctgaatttgttaaatgtcaatcaagttagctcttctgttcaaacggagcgttaacgggactgacgtggccgttaacctctca 36762608  T
Q  148 catgtcagatgtcacataggca---------ttggctgataatagcaaacatttcaaatgaccaaattgattgatttgcagaaaatgttttgg 231  Q
    ||||||||| | ||||||| ||         ||||| ||||||| |||||||||| || ||| ||||||||||||||||||||| | ||||||    
T  36762607 catgtcagacgccacatagacagggactaatttggccgataataacaaacatttcgaaggactaaattgattgatttgcagaaatttttttgg 36762515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 38 - 147
Target Start/End: Original strand, 4321092 - 4321201
Alignment:
Q  38 ttaattgtgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgt 137  Q
    |||||| ||||||||| ||||||||||  | ||||| | |||||||||||||||||||| ||| ||||||  || ||||| |||| ||||||||| ||||    
T  4321092 ttaattatgcgaaatatcaatttaatccctgaatttgttaaatgtcaatcaagttagtccttcagttcaaatggagcgttgatggggctgacgtggccgt 4321191  T
Q  138 taacctctca 147  Q
    ||||||||||    
T  4321192 taacctctca 4321201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 48 - 235
Target Start/End: Complemental strand, 40785575 - 40785379
Alignment:
Q  48 gaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgttaacctctca 147  Q
    |||||| |||| |||||  | ||||| | |||||||||||||||||||| ||||||||||  || || |||| ||  |||||||| |||||||| |||||    
T  40785575 gaaatatcaatctaatccctgaatttgttaaatgtcaatcaagttagtctttctgttcaaatggagcattaacgggactgacgtggccgttaacatctca 40785476  T
Q  148 catgtcagatgtcacataggca---------ttggctgataatagcaaacatttcaaatgaccaaattgattgatttgcagaaaatgttttggcttt 235  Q
    ||||||||| | ||| |||| |         ||||| ||||| | ||||||||||| | ||| ||| ||||||||||| ||||||||||||||||||    
T  40785475 catgtcagacgccacgtaggtagggactaatttggccgataaaaacaaacatttcataggactaaactgattgatttgtagaaaatgttttggcttt 40785379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 40 - 154
Target Start/End: Original strand, 8421472 - 8421586
Alignment:
Q  40 aattgtgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgtta 139  Q
    |||| ||||||||| ||||||||||  | ||||| | || |||||||||| |||||| ||||| |||| |||| |||||| || ||||||||| ||||||    
T  8421472 aattatgcgaaatatcaatttaatccctgaatttgttaattgtcaatcaatttagtccttctggtcaaacgggccgttaacggggctgacgtggccgtta 8421571  T
Q  140 acctctcacatgtca 154  Q
    |||||| ||||||||    
T  8421572 acctcttacatgtca 8421586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 69 - 151
Target Start/End: Complemental strand, 11685645 - 11685563
Alignment:
Q  69 aatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgttaacctctcacatg 151  Q
    ||||| ||| ||||||||||| ||||||| ||||| |||| || | ||||| |||||||||||| ||||||||||||||||||    
T  11685645 aatttgtcatatgtcaatcaatttagtcactctgtccaattggagtgttaacggtgctgacgtggccgttaacctctcacatg 11685563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 40 - 154
Target Start/End: Original strand, 35342481 - 35342595
Alignment:
Q  40 aattgtgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgtta 139  Q
    |||| ||||||||| ||||||||||  | ||||| | || |||||||||| |||||| ||||| |||| |||| |||||| || |||||||||  |||||    
T  35342481 aattatgcgaaatatcaatttaatccctgaatttgttaattgtcaatcaatttagtccttctggtcaaacgggccgttaacggggctgacgtggtcgtta 35342580  T
Q  140 acctctcacatgtca 154  Q
    |||||| ||||||||    
T  35342581 acctcttacatgtca 35342595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 40 - 169
Target Start/End: Original strand, 46810761 - 46810889
Alignment:
Q  40 aattgtgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgtta 139  Q
    |||| ||||||||| ||||||||||  | ||||| | |||||||||||||||||| | |||| ||||| | | ||||||| ||  |||| ||| ||||||    
T  46810761 aattatgcgaaatatcaatttaatccctgaatttgttaaatgtcaatcaagttag-ccttctattcaaacagagcgttaacgggactgatgtggccgtta 46810859  T
Q  140 acctctcacatgtcagatgtcacataggca 169  Q
    ||||||||||||||||| | ||| ||||||    
T  46810860 acctctcacatgtcagacgccacgtaggca 46810889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 77 - 165
Target Start/End: Complemental strand, 34785110 - 34785022
Alignment:
Q  77 aaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgttaacctctcacatgtcagatgtcacata 165  Q
    ||||||||||||| ||||||  || || |||| || | ||||| ||||||||||||  |||||||||||||||||||||||| ||||||    
T  34785110 aaatgtcaatcaatttagtccctccgtccaattggagtgttaacggtgctgacgtggtcgttaacctctcacatgtcagatgccacata 34785022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 77 - 165
Target Start/End: Original strand, 34784132 - 34784220
Alignment:
Q  77 aaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgttaacctctcacatgtcagatgtcacata 165  Q
    ||||||||||||| ||||||  || || |||| |  | ||||| |||||||||||| ||||||||||||||||||||| ||| ||||||    
T  34784132 aaatgtcaatcaatttagtccctccgtccaattgcagtgttaacggtgctgacgtggccgttaacctctcacatgtcatatgccacata 34784220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 69 - 152
Target Start/End: Complemental strand, 6058476 - 6058393
Alignment:
Q  69 aatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgttaacctctcacatgt 152  Q
    ||||| ||| || |||||||| |||||| ||  || || | |||||||||| |||| ||||||| |||||||||||||||||||    
T  6058476 aatttgtcatatctcaatcaaattagtccttacgtccatttggggcgttaacggtgatgacgtggccgttaacctctcacatgt 6058393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 154
Target Start/End: Complemental strand, 34692707 - 34692669
Alignment:
Q  116 ttaatggtgctgacgtgaccgttaacctctcacatgtca 154  Q
    |||| ||||||||||||||||||||||| ||||||||||    
T  34692707 ttaacggtgctgacgtgaccgttaacctttcacatgtca 34692669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 110 - 151
Target Start/End: Original strand, 25971806 - 25971847
Alignment:
Q  110 ggggcgttaatggtgctgacgtgaccgttaacctctcacatg 151  Q
    |||||||||| |||| ||||||| ||||||||||||||||||    
T  25971806 ggggcgttaacggtgatgacgtggccgttaacctctcacatg 25971847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 86; Significance: 3e-41; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 40 - 236
Target Start/End: Original strand, 33111897 - 33112102
Alignment:
Q  40 aattgtgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgtta 139  Q
    |||| ||||||||| ||||||||||  | ||||| | |||||||||||||||||||| |||| ||||| ||| |||||||||| ||||||||||||||||    
T  33111897 aattatgcgaaatatcaatttaatccctgaatttgttaaatgtcaatcaagttagtccttctattcaaacggagcgttaatggagctgacgtgaccgtta 33111996  T
Q  140 acctctcacatgtcagatgtcacataggca---------ttggctgataatagcaaacatttcaaatgaccaaattgattgatttgcagaaaatgttttg 230  Q
    ||||||||||||||||| | ||| ||| ||         ||||| ||||||| ||||||||||||| ||| ||| ||||||||||||||||||||||| |    
T  33111997 acctctcacatgtcagacgccacgtagacacggactaatttggccgataataacaaacatttcaaaggactaaactgattgatttgcagaaaatgtttcg 33112096  T
Q  231 gctttc 236  Q
    ||||||    
T  33112097 gctttc 33112102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 38 - 236
Target Start/End: Complemental strand, 48635410 - 48635203
Alignment:
Q  38 ttaattgtgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgt 137  Q
    |||||| ||||||||| ||||||||||  | ||||| | |||||||||| ||||||||| |||||||||| ||| ||||||| || ||||||||| ||||    
T  48635410 ttaattatgcgaaatatcaatttaatccctgaatttgttaaatgtcaattaagttagtctttctgttcaaacggagcgttaacggggctgacgtggccgt 48635311  T
Q  138 taacctctcacatgtcagatgtcacataggca---------ttggctgataatagcaaacatttcaaatgaccaaattgattgatttgcagaaaatgttt 228  Q
    ||||||||||||||||||| | ||  ||||||         ||||| ||||||| |||||||||| || ||| |||||||||||||||||||||||||||    
T  48635310 taacctctcacatgtcagacgccatgtaggcagggactaatttggccgataataacaaacatttcgaaggactaaattgattgatttgcagaaaatgttt 48635211  T
Q  229 tggctttc 236  Q
    || |||||    
T  48635210 tgactttc 48635203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 40 - 236
Target Start/End: Original strand, 45897106 - 45897311
Alignment:
Q  40 aattgtgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgtta 139  Q
    |||| ||||||||| ||||||||||  | ||||| | |||||||||||||||||||  |||||||||| ||| |||||||    ||||||||| ||||||    
T  45897106 aattatgcgaaatatcaatttaatccctgaatttgttaaatgtcaatcaagttagttcttctgttcaaacggagcgttaacaaggctgacgtggccgtta 45897205  T
Q  140 acctctcacatgtcagatgtcacataggca---------ttggctgataatagcaaacatttcaaatgaccaaattgattgatttgcagaaaatgttttg 230  Q
    ||||||||||||||||| |  || ||||||         ||||| ||||||| |||||||||| || ||| |||||||||||||||||||||||||||||    
T  45897206 acctctcacatgtcagacgcaacgtaggcagggactaatttggccgataataacaaacatttcgaaggactaaattgattgatttgcagaaaatgttttg 45897305  T
Q  231 gctttc 236  Q
    ||||||    
T  45897306 gctttc 45897311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 47 - 155
Target Start/End: Original strand, 33851045 - 33851153
Alignment:
Q  47 cgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgttaacctctc 146  Q
    ||||||| ||||||||||| | ||||| | ||||||||||||||||||||||||||||||| ||| ||||||| || |||||||||||||||||||||||    
T  33851045 cgaaatatcaatttaatctctgaatttgttaaatgtcaatcaagttagtcattctgttcaaacggagcgttaacggggctgacgtgaccgttaacctctc 33851144  T
Q  147 acatgtcag 155  Q
    |||||||||    
T  33851145 acatgtcag 33851153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 55 - 230
Target Start/End: Complemental strand, 23775673 - 23775489
Alignment:
Q  55 caatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgttaacctctcacatgtca 154  Q
    ||||||||||  | ||||| | |||||||||||||||||||| |||||||||| | | |||||||||| |||||| ||||||||||||||||| ||||||    
T  23775673 caatttaatccctgaatttgttaaatgtcaatcaagttagtccttctgttcaaacagagcgttaatggggctgacttgaccgttaacctctcatatgtca 23775574  T
Q  155 gatgtcacataggca---------ttggctgataatagcaaacatttcaaatgaccaaattgattgatttgcagaaaatgttttg 230  Q
    || | ||| ||||||         |||| |||||||| |||||||||| || ||| ||||| |||||||||||||||||||||||    
T  23775573 gacgccacgtaggcagggactaatttggttgataataacaaacatttcgaaggactaaattcattgatttgcagaaaatgttttg 23775489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 45 - 243
Target Start/End: Original strand, 2975521 - 2975728
Alignment:
Q  45 tgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgttaacctc 144  Q
    ||||||||| ||||||||||  | ||||| | |||| ||||||||||||||| |||||||| | ||   |||||| |||| ||||||| |||||||||||    
T  2975521 tgcgaaatatcaatttaatccctgaatttgttaaatttcaatcaagttagtccttctgttcgaccgaaacgttaacggtgttgacgtggccgttaacctc 2975620  T
Q  145 tcacatgtcagatgtcacataggca---------ttggctgataatagcaaacatttcaaatgaccaaattgattgatttgcagaaaatgttttggcttt 235  Q
    ||||||||||||  |||| ||||||         ||||  ||||||  ||||||||||||| |||||||||||||||||| |||||| ||||||||||||    
T  2975621 tcacatgtcagacatcacgtaggcagggattaatttggtcgataatgacaaacatttcaaaggaccaaattgattgatttccagaaattgttttggcttt 2975720  T
Q  236 catctcac 243  Q
    | ||||||    
T  2975721 cttctcac 2975728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 40 - 236
Target Start/End: Original strand, 23887254 - 23887459
Alignment:
Q  40 aattgtgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgtta 139  Q
    |||| ||||||||| ||||||||||  | ||||| |  ||||||||||||||||||| |||||||||| ||| ||||||| || ||||||||| ||||||    
T  23887254 aattatgcgaaatatcaatttaatccctgaatttgttcaatgtcaatcaagttagtccttctgttcaaacggagcgttaacggggctgacgtggccgtta 23887353  T
Q  140 acctctcacatgtcagatgtcacataggca---------ttggctgataatagcaaacatttcaaatgaccaaattgattgatttgcagaaaatgttttg 230  Q
    |||| |||||||||||| | ||| ||||||         ||| | |||||||  || |||||| || ||| ||||||||||||||||||||||| |||||    
T  23887354 acctttcacatgtcagacgccacgtaggcagggactaatttgaccgataataaaaatcatttcgaaggactaaattgattgatttgcagaaaatattttg 23887453  T
Q  231 gctttc 236  Q
    ||||||    
T  23887454 gctttc 23887459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 40 - 236
Target Start/End: Complemental strand, 1847680 - 1847475
Alignment:
Q  40 aattgtgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgtta 139  Q
    |||| ||| ||||| ||||||||||  | ||||| | |||||||||||||||||||| |||||||||| ||| ||||||| || | ||| ||| ||||||    
T  1847680 aattatgcaaaatatcaatttaatccctgaatttgttaaatgtcaatcaagttagtccttctgttcaaacggagcgttaacggggatgatgtggccgtta 1847581  T
Q  140 acctctcacatgtcagatgtcacataggca---------ttggctgataatagcaaacatttcaaatgaccaaattgattgatttgcagaaaatgttttg 230  Q
    || |||||||||||||| ||||   |||||         ||||  ||||||| ||||||||||||| |||||| ||||||||||||||||||||||  ||    
T  1847580 acttctcacatgtcagacgtcatgcaggcatggactaatttggtcgataataacaaacatttcaaaggaccaatttgattgatttgcagaaaatgtggtg 1847481  T
Q  231 gctttc 236  Q
    ||||||    
T  1847480 gctttc 1847475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 40 - 169
Target Start/End: Original strand, 37865440 - 37865569
Alignment:
Q  40 aattgtgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgtta 139  Q
    |||| ||||||||| ||||||||||  | ||||| | |||||||||||||||||||| ||| |||||| ||| ||||||| || ||||||||| ||||||    
T  37865440 aattatgcgaaatatcaatttaatccctgaatttgttaaatgtcaatcaagttagtctttcagttcaaacggagcgttaacggggctgacgtggccgtta 37865539  T
Q  140 acctctcacatgtcagatgtcacataggca 169  Q
    ||||||||||||||||| | ||| ||||||    
T  37865540 acctctcacatgtcagacgccacgtaggca 37865569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 38 - 226
Target Start/End: Original strand, 40508547 - 40508744
Alignment:
Q  38 ttaattgtgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgt 137  Q
    |||||| ||||||||  ||||||||||  | ||||| | |||||||||||||||||||| |||| ||||| | | ||||||| || ||||||||| ||||    
T  40508547 ttaattatgcgaaatctcaatttaatccctgaatttgttaaatgtcaatcaagttagtccttctattcaaacagagcgttaacggggctgacgtggccgt 40508646  T
Q  138 taacctctcacatgtcagatgtcacataggca---------ttggctgataatagcaaacatttcaaatgaccaaattgattgatttgcagaaaatgt 226  Q
    ||||||||||||||||||| | |||  |||||         ||||  ||||||| |||||||||| || ||| ||||||||||||||| |||||||||    
T  40508647 taacctctcacatgtcagacgccacgcaggcagggactaatttggtcgataataacaaacatttcgaaggactaaattgattgatttgtagaaaatgt 40508744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 40 - 155
Target Start/End: Original strand, 18428805 - 18428918
Alignment:
Q  40 aattgtgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaat-cggggcgttaatggtgctgacgtgaccgtt 138  Q
    |||| ||||||||| |||||||||||  || ||| | |||||||||||||||||||||||  ||||||  ||| ||||||| || |||||||||||||||    
T  18428805 aattatgcgaaatatcaatttaatctcgaa-tttgttaaatgtcaatcaagttagtcatt--gttcaaaacggagcgttaacggggctgacgtgaccgtt 18428901  T
Q  139 aacctctcacatgtcag 155  Q
    |||||||||||||||||    
T  18428902 aacctctcacatgtcag 18428918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 59 - 139
Target Start/End: Original strand, 51453878 - 51453958
Alignment:
Q  59 ttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgtta 139  Q
    |||||| |||||||| | |||| ||||||||||||||| |||||||||| ||| ||||||| |||||||||||||||||||    
T  51453878 ttaatccttaaatttgttaaatctcaatcaagttagtccttctgttcaaacggagcgttaacggtgctgacgtgaccgtta 51453958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 38 - 236
Target Start/End: Original strand, 31885572 - 31885778
Alignment:
Q  38 ttaattgtgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgt 137  Q
    |||||| ||||||||| ||||||| |  || |||||   |||||||||||||||||||| || ||||||| | | ||||||| || || |||||| || |    
T  31885572 ttaattatgcgaaatatcaatttagtacttgaatttgctaaatgtcaatcaagttagtcctt-tgttcaaacagagcgttaacggggccgacgtggccat 31885670  T
Q  138 taacctctcacatgtcagatgtcacataggca---------ttggctgataatagcaaacatttcaaatgaccaaattgattgatttgcagaaaatgttt 228  Q
    ||||||||||| ||||||| | ||| ||||||         || |||||||||| |||| ||||||||  || |||||||||| ||||||||| ||||||    
T  31885671 taacctctcacgtgtcagacgccacgtaggcaatgactaattttgctgataataacaaatatttcaaagaactaaattgattgctttgcagaacatgttt 31885770  T
Q  229 tggctttc 236  Q
    || |||||    
T  31885771 tgactttc 31885778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 77 - 155
Target Start/End: Original strand, 45255576 - 45255654
Alignment:
Q  77 aaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgttaacctctcacatgtcag 155  Q
    |||||||||||||||||||| |||||||||| ||  ||||||| || ||| ||||  ||||||||||||||||||||||    
T  45255576 aaatgtcaatcaagttagtccttctgttcaaacgaagcgttaacggggctaacgtagccgttaacctctcacatgtcag 45255654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 77 - 227
Target Start/End: Original strand, 30501210 - 30501369
Alignment:
Q  77 aaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgttaacctctcacatgtcagatgtcacataggca------- 169  Q
    ||||||||||||| ||||||  || || |||| || | ||||| ||||||||||||||||| || ||||||||||||||||| |||| | |||           
T  30501210 aaatgtcaatcaatttagtccctccgtccaattggagtgttaacggtgctgacgtgaccgtcaatctctcacatgtcagatgccacacaagcaaagacta 30501309  T
Q  170 --ttggctgataatagcaaacatttcaaatgaccaaattgattgatttgcagaaaatgtt 227  Q
      |||||||||| |  | || ||||| || ||| ||||||||||||||||||||||||||    
T  30501310 atttggctgatagtgaccaaaatttccaaggacgaaattgattgatttgcagaaaatgtt 30501369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 40 - 156
Target Start/End: Original strand, 24381800 - 24381917
Alignment:
Q  40 aattgtgcgaaataacaatttaatctttaaat-ttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggt-gctgacgtgaccgt 137  Q
    |||| ||||||||| ||||||||||||| ||| || | |||| |||| |||||||||| |||||||||| ||| ||||||| ||  |||||||||  |||    
T  24381800 aattatgcgaaatatcaatttaatctttgaatatttttaaatttcaa-caagttagtccttctgttcaaacggagcgttaacggacgctgacgtggtcgt 24381898  T
Q  138 taacctctcacatgtcaga 156  Q
    || ||||||||||||||||    
T  24381899 tagcctctcacatgtcaga 24381917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 80 - 221
Target Start/End: Original strand, 40998611 - 40998761
Alignment:
Q  80 tgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgttaacctctcacatgtcagatgtcacataggca---------t 170  Q
    |||||||||| |||||| ||||| |||| |||| | |||| || ||||||||| |||||||||||| |||||||| | | ||| ||||||         |    
T  40998611 tgtcaatcaatttagtccttctggtcaaacgggccattaacggggctgacgtggccgttaacctcttacatgtcatacgccacgtaggcagggactaatt 40998710  T
Q  171 tggctgataatagcaaacatttcaaatgaccaaattgattgatttgcagaa 221  Q
    |||||||||||  |||||||||  || ||| ||||||||||||||||||||    
T  40998711 tggctgataattccaaacattttgaaggactaaattgattgatttgcagaa 40998761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 151
Target Start/End: Complemental strand, 5127453 - 5127371
Alignment:
Q  69 aatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgttaacctctcacatg 151  Q
    ||||| ||| || |||||||| |||||| ||  || || | |||||||||| |||| ||||||| ||||||||||||||||||    
T  5127453 aatttgtcatatctcaatcaaattagtccttacgtccatttggggcgttaacggtgatgacgtggccgttaacctctcacatg 5127371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 110 - 151
Target Start/End: Complemental strand, 5134667 - 5134626
Alignment:
Q  110 ggggcgttaatggtgctgacgtgaccgttaacctctcacatg 151  Q
    |||||||||| |||| ||||||| ||||||||||||||||||    
T  5134667 ggggcgttaacggtgatgacgtggccgttaacctctcacatg 5134626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 185 - 222
Target Start/End: Original strand, 18428951 - 18428988
Alignment:
Q  185 aaacatttcaaatgaccaaattgattgatttgcagaaa 222  Q
    ||||||||| |||||| |||||||||||||||||||||    
T  18428951 aaacatttcgaatgactaaattgattgatttgcagaaa 18428988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 77 - 154
Target Start/End: Original strand, 26447847 - 26447924
Alignment:
Q  77 aaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgttaacctctcacatgtca 154  Q
    ||||||||||||| ||||||  ||  |||||| || | ||||||||||||||||||   |||||||| ||||||||||    
T  26447847 aaatgtcaatcaatttagtctctccattcaattggagtgttaatggtgctgacgtggttgttaacctttcacatgtca 26447924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 170 - 227
Target Start/End: Original strand, 26447942 - 26447999
Alignment:
Q  170 ttggctgataatagcaaacatttcaaatgaccaaattgattgatttgcagaaaatgtt 227  Q
    |||||||||| || | || ||||| || ||| ||||||||||||||||||||||||||    
T  26447942 ttggctgatagtaaccaaaatttccaaggacgaaattgattgatttgcagaaaatgtt 26447999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 225
Target Start/End: Original strand, 7589502 - 7589538
Alignment:
Q  189 atttcaaatgaccaaattgattgatttgcagaaaatg 225  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  7589502 atttccaatgacaaaattgattgatttgcagaaaatg 7589538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 82; Significance: 8e-39; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 40 - 236
Target Start/End: Complemental strand, 40330550 - 40330345
Alignment:
Q  40 aattgtgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgtta 139  Q
    |||| ||||||||| ||||||||||  | ||||| | |||||| ||||||||||||| |||||||||| ||| ||||||| |||||||||||| |||| |    
T  40330550 aattatgcgaaatatcaatttaatccctgaatttgttaaatgtgaatcaagttagtccttctgttcaaacggagcgttaacggtgctgacgtggccgtca 40330451  T
Q  140 acctctcacatgtcagatgtcacataggca---------ttggctgataatagcaaacatttcaaatgaccaaattgattgatttgcagaaaatgttttg 230  Q
    ||||||||||||||||| | ||| ||||||         ||||| |||||||  |||||||||||| ||| |||||||||||||||||||||||| ||||    
T  40330450 acctctcacatgtcagacgccacgtaggcagagactaatttggccgataataaaaaacatttcaaaggactaaattgattgatttgcagaaaatgctttg 40330351  T
Q  231 gctttc 236  Q
    ||||||    
T  40330350 gctttc 40330345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 38 - 236
Target Start/End: Original strand, 38176686 - 38176893
Alignment:
Q  38 ttaattgtgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgt 137  Q
    |||||| ||||||||| ||||||||||  | ||||| | |||| |||||||||||| || |||||||||| ||| | ||||| || ||||||||||||||    
T  38176686 ttaattatgcgaaatatcaatttaatccctgaatttgttaaatatcaatcaagttactccttctgttcaaacggagtgttaacggggctgacgtgaccgt 38176785  T
Q  138 taacctctcacatgtcagatgtcacataggca---------ttggctgataatagcaaacatttcaaatgaccaaattgattgatttgcagaaaatgttt 228  Q
    ||||||||||||||||||| | ||| ||||||         ||||| ||||||| |||||||||| || ||| |||||||||||||||||||||||||||    
T  38176786 taacctctcacatgtcagacgccacgtaggcagggactaatttggccgataataacaaacatttcgaaggactaaattgattgatttgcagaaaatgttt 38176885  T
Q  229 tggctttc 236  Q
    || |||||    
T  38176886 tgactttc 38176893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 38 - 236
Target Start/End: Original strand, 38203910 - 38204117
Alignment:
Q  38 ttaattgtgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgt 137  Q
    |||||| ||||||||| ||||||||||  | ||||| | |||| |||||||||||| || |||||||||| ||| | ||||| || ||||||||||||||    
T  38203910 ttaattatgcgaaatatcaatttaatccctgaatttgttaaatatcaatcaagttactccttctgttcaaacggagtgttaacggggctgacgtgaccgt 38204009  T
Q  138 taacctctcacatgtcagatgtcacataggca---------ttggctgataatagcaaacatttcaaatgaccaaattgattgatttgcagaaaatgttt 228  Q
    ||||||||||||||||||| | ||| ||||||         ||||| ||||||| |||||||||| || ||| |||||||||||||||||||||||||||    
T  38204010 taacctctcacatgtcagacgccacgtaggcagggactaatttggccgataataacaaacatttcgaaggactaaattgattgatttgcagaaaatgttt 38204109  T
Q  229 tggctttc 236  Q
    || |||||    
T  38204110 tgactttc 38204117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 38 - 236
Target Start/End: Complemental strand, 33257797 - 33257590
Alignment:
Q  38 ttaattgtgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgt 137  Q
    |||||| ||||||||| ||||||||||  | ||||| | |||||||||||||||||||| |||||||||| ||| |||||||    ||||||||| ||||    
T  33257797 ttaattatgcgaaatatcaatttaatccctgaatttgttaaatgtcaatcaagttagtccttctgttcaaacggagcgttaacaaggctgacgtggccgt 33257698  T
Q  138 taacctctcacatgtcagatgtcacataggca---------ttggctgataatagcaaacatttcaaatgaccaaattgattgatttgcagaaaatgttt 228  Q
    ||||||||| ||||||||| |  || ||||||         ||||| ||||||| |||||||||| || ||| |||||||||||||||||||||||||||    
T  33257697 taacctctcgcatgtcagacgctacgtaggcagggactaatttggccgataataacaaacatttctaaggactaaattgattgatttgcagaaaatgttt 33257598  T
Q  229 tggctttc 236  Q
    ||||||||    
T  33257597 tggctttc 33257590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 40 - 236
Target Start/End: Complemental strand, 32089960 - 32089755
Alignment:
Q  40 aattgtgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgtta 139  Q
    |||| ||||||||| ||||||||||  | ||||| | |||||||||||||||||||| || ||||||| ||| ||||||| || ||||||| | ||||||    
T  32089960 aattatgcgaaatatcaatttaatccctgaatttgttaaatgtcaatcaagttagtccttatgttcaaacggagcgttaacggggctgacgcggccgtta 32089861  T
Q  140 acctctcacatgtcagatgtcacataggca---------ttggctgataatagcaaacatttcaaatgaccaaattgattgatttgcagaaaatgttttg 230  Q
    ||||||||||||||||| | ||| ||||||         ||||| ||||||| |||||||||  || ||| ||||||||||||||| |||||||||||||    
T  32089860 acctctcacatgtcagacgccacgtaggcagggactaatttggccgataataacaaacattttgaaggactaaattgattgatttgtagaaaatgttttg 32089761  T
Q  231 gctttc 236  Q
    ||||||    
T  32089760 gctttc 32089755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 38 - 229
Target Start/End: Original strand, 32835930 - 32836130
Alignment:
Q  38 ttaattgtgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgt 137  Q
    |||||| ||||||||| ||||||||||  | ||||||| |||||||||||||||||||| ||| |||||| | |  |||||| || ||||||||| ||||    
T  32835930 ttaattatgcgaaatatcaatttaatccctgaatttattaaatgtcaatcaagttagtccttcggttcaaacagaacgttaacggggctgacgtggccgt 32836029  T
Q  138 taacctctcacatgtcagatgtcacataggca---------ttggctgataatagcaaacatttcaaatgaccaaattgattgatttgcagaaaatgttt 228  Q
    ||||||||||||||||||| | ||| ||||||         ||||| ||||||| |||||| ||| || ||| |||||||||||||||||||||||||||    
T  32836030 taacctctcacatgtcagacgccacgtaggcatggactaatttggccgataataacaaacacttcgaaggactaaattgattgatttgcagaaaatgttt 32836129  T
Q  229 t 229  Q
    |    
T  32836130 t 32836130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 45 - 236
Target Start/End: Original strand, 43316841 - 43317041
Alignment:
Q  45 tgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgttaacctc 144  Q
    ||||||||| ||||||||||  | ||||| | |||||||||||||||||||| |||||||||| ||| ||||||| || |||||||||||||||||||||    
T  43316841 tgcgaaatatcaatttaatccctgaatttgttaaatgtcaatcaagttagtccttctgttcaaacggagcgttaacggagctgacgtgaccgttaacctc 43316940  T
Q  145 tcacatgtcagatgtcacataggca---------ttggctgataatagcaaacatttcaaatgaccaaattgattgatttgcagaaaatgttttggcttt 235  Q
    |||||||||||| | ||||||  ||         ||||| ||||||| |||||||||  || ||| ||| ||||||||||||||||||| ||| ||||||    
T  43316941 tcacatgtcagacgccacataaacagggactaatttggccgataataacaaacattttgaaggactaaactgattgatttgcagaaaatatttcggcttt 43317040  T
Q  236 c 236  Q
    |    
T  43317041 c 43317041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 48 - 236
Target Start/End: Original strand, 35291112 - 35291309
Alignment:
Q  48 gaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgttaacctctca 147  Q
    |||||| ||||||||||  | ||||| | |||||||||||||||||||| ||||||||||  || ||||||| || ||||||||| ||||||||||||||    
T  35291112 gaaatatcaatttaatccctgaatttgttaaatgtcaatcaagttagtccttctgttcaaatggagcgttaacggagctgacgtggccgttaacctctca 35291211  T
Q  148 catgtcagatgtcacataggca---------ttggctgataatagcaaacatttcaaatgaccaaattgattgatttgcagaaaatgttttggctttc 236  Q
    ||||||||| | ||||||| ||         ||||| ||||||| |||||||||  || ||| ||| ||||||||||||||||||||||| |||||||    
T  35291212 catgtcagacgacacatagacagggactaatttggccgataataacaaacattttgaaggactaaactgattgatttgcagaaaatgtttcggctttc 35291309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 40 - 236
Target Start/End: Original strand, 18726621 - 18726823
Alignment:
Q  40 aattgtgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgtta 139  Q
    |||| ||||||||| ||||||| ||  | ||||| | ||||||||||||||||||||   |||||||| ||| ||||||| || ||||||||| ||||||    
T  18726621 aattatgcgaaatatcaatttagtcccttaatttgttaaatgtcaatcaagttagtc---ctgttcaaacggagcgttaacggggctgacgtggccgtta 18726717  T
Q  140 acctctcacatgtcagatgtcacataggca---------ttggctgataatagcaaacatttcaaatgaccaaattgattgatttgcagaaaatgttttg 230  Q
    ||||||||||||||||| | ||| ||||||         ||  | ||||||| |||||||||  || ||| ||||||||||||||||| |||||||||||    
T  18726718 acctctcacatgtcagacgccacgtaggcagggactaatttaaccgataataacaaacattttgaaggactaaattgattgatttgcataaaatgttttg 18726817  T
Q  231 gctttc 236  Q
    ||||||    
T  18726818 gctttc 18726823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 40 - 169
Target Start/End: Original strand, 42619345 - 42619474
Alignment:
Q  40 aattgtgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgtta 139  Q
    |||| ||||||||| ||||||||||    ||||| | |||||||||||||||||||| ||| |||||| ||| |  |||| || ||| ||||| ||||||    
T  42619345 aattatgcgaaatatcaatttaatcccagaatttgttaaatgtcaatcaagttagtccttcagttcaaacggagtattaacggggctaacgtggccgtta 42619444  T
Q  140 acctctcacatgtcagatgtcacataggca 169  Q
    ||||||||||||||||| | ||| ||||||    
T  42619445 acctctcacatgtcagacgccacgtaggca 42619474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 48 - 156
Target Start/End: Original strand, 24232216 - 24232324
Alignment:
Q  48 gaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgttaacctctca 147  Q
    |||||| |||| |||| | | ||||| | |||||||||||||||||||  |||||||||| |   || |||| || | ||||||| ||||||||||||||    
T  24232216 gaaatatcaatctaatttctgaatttgttaaatgtcaatcaagttagtacttctgttcaaacaaagcattaacggggttgacgtggccgttaacctctca 24232315  T
Q  148 catgtcaga 156  Q
    |||||||||    
T  24232316 catgtcaga 24232324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 128 - 165
Target Start/End: Complemental strand, 1344761 - 1344724
Alignment:
Q  128 acgtgaccgttaacctctcacatgtcagatgtcacata 165  Q
    ||||| ||||||||||||||||||||||||| ||||||    
T  1344761 acgtggccgttaacctctcacatgtcagatgccacata 1344724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 230
Target Start/End: Complemental strand, 24497928 - 24497896
Alignment:
Q  198 gaccaaattgattgatttgcagaaaatgttttg 230  Q
    ||||||||||||||||||||| |||||||||||    
T  24497928 gaccaaattgattgatttgcataaaatgttttg 24497896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 82; Significance: 8e-39; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 40 - 236
Target Start/End: Complemental strand, 31803735 - 31803530
Alignment:
Q  40 aattgtgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgtta 139  Q
    |||| ||||||||| ||||||||||  | ||||| | |||||||||||||||||||| |||||||||| ||| ||||||| || ||||||||| ||||||    
T  31803735 aattatgcgaaatatcaatttaatccctgaatttgttaaatgtcaatcaagttagtccttctgttcaaacggagcgttaacggggctgacgtggccgtta 31803636  T
Q  140 acctctcacatgtcagatgtcacataggc---------attggctgataatagcaaacatttcaaatgaccaaattgattgatttgcagaaaatgttttg 230  Q
    |||| |||||||||||| | ||| |||||          ||||| ||||||| |||||||||| || ||| |||||||||||||||||||||||||||||    
T  31803635 acctttcacatgtcagacgccacgtaggcggggactaatttggccgataataacaaacatttcgaaggactaaattgattgatttgcagaaaatgttttg 31803536  T
Q  231 gctttc 236  Q
    ||||||    
T  31803535 gctttc 31803530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 40 - 236
Target Start/End: Original strand, 46636821 - 46637026
Alignment:
Q  40 aattgtgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgtta 139  Q
    |||| ||||||||| ||||||||| | | ||||| | |||||||||||||||||||| |||||||||| ||| ||||||| || ||||||||| ||||||    
T  46636821 aattatgcgaaatatcaatttaatttctgaatttgttaaatgtcaatcaagttagtccttctgttcaaacggagcgttaacggggctgacgtggccgtta 46636920  T
Q  140 acctctcacatgtcagatgtcacataggca---------ttggctgataatagcaaacatttcaaatgaccaaattgattgatttgcagaaaatgttttg 230  Q
    |||| |||||||||||| | ||| ||||||         ||||| ||||||| |||||||||  || ||| |||||||||||||||||||||||||||||    
T  46636921 acctttcacatgtcagacgccacgtaggcagggactaatttggccgataataacaaacattttgaaggactaaattgattgatttgcagaaaatgttttg 46637020  T
Q  231 gctttc 236  Q
    ||||||    
T  46637021 gctttc 46637026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 38 - 221
Target Start/End: Complemental strand, 44159331 - 44159139
Alignment:
Q  38 ttaattgtgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgt 137  Q
    |||||| ||| ||||| |||||||||   | ||||| | ||||||||||||||||||||||||||||||| ||  ||||||| || ||||||||||||||    
T  44159331 ttaattatgcaaaatatcaatttaattcctgaatttgttaaatgtcaatcaagttagtcattctgttcaaacgaagcgttaacggggctgacgtgaccgt 44159232  T
Q  138 taacctctcacatgtcagatgtcacataggca---------ttggctgataatagcaaacatttcaaatgaccaaattgattgatttgcagaa 221  Q
    ||||||||||||||||||  | ||| ||||||         ||||| ||||||| |||||||||| || ||| ||||||||||||||||||||    
T  44159231 taacctctcacatgtcaggcgccacgtaggcaatgactaatttggccgataataacaaacatttcgaaggactaaattgattgatttgcagaa 44159139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 40 - 221
Target Start/End: Complemental strand, 6577140 - 6576950
Alignment:
Q  40 aattgtgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgtta 139  Q
    |||| ||||||||| ||||||||||  | ||||||  |||||||||||||||||| | |||||||||| ||| |||||||||| ||||||||| ||||||    
T  6577140 aattatgcgaaatatcaatttaatccctgaatttactaaatgtcaatcaagttagcccttctgttcaaacggagcgttaatggggctgacgtggccgtta 6577041  T
Q  140 acctctcacatgtcagatgtcacataggca---------ttggctgataatagcaaacatttcaaatgaccaaattgattgatttgcagaa 221  Q
    | ||||||||||||||| | ||| ||||||         ||||| |||||||  |||||||||||| ||| ||||| ||||||||||||||    
T  6577040 atctctcacatgtcagacgccacgtaggcagggactaatttggccgataataataaacatttcaaaggactaaattaattgatttgcagaa 6576950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 37 - 231
Target Start/End: Complemental strand, 42136282 - 42136079
Alignment:
Q  37 tttaattgtgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccg 136  Q
    ||||||| ||||||||| ||||||||||  | ||||| | |||||||||||||||||||| |||||||||| ||| |||||||  | |||||||||  ||    
T  42136282 tttaattatgcgaaatatcaatttaatccctgaatttgttaaatgtcaatcaagttagtccttctgttcaaacggagcgttaacagggctgacgtggtcg 42136183  T
Q  137 ttaacctctcacatgtcagatgtcacataggca---------ttggctgataatagcaaacatttcaaatgaccaaattgattgatttgcagaaaatgtt 227  Q
    ||| ||||||||||| |||| | ||| ||||||         ||| ||||||||| |||||||||| || ||| ||||||||||||||||||||| | ||    
T  42136182 ttatcctctcacatggcagacgccacgtaggcagagactaatttgactgataataacaaacatttcgaaggactaaattgattgatttgcagaaattttt 42136083  T
Q  228 ttgg 231  Q
    ||||    
T  42136082 ttgg 42136079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 40 - 156
Target Start/End: Complemental strand, 5784902 - 5784786
Alignment:
Q  40 aattgtgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgtta 139  Q
    |||| ||||||||| ||||||||||  | ||||| | |||||||||||||||||||| ||| |||||| ||| ||||||| || ||||||||||||||||    
T  5784902 aattatgcgaaatatcaatttaatccctgaatttgttaaatgtcaatcaagttagtccttcagttcaaacggagcgttaacggggctgacgtgaccgtta 5784803  T
Q  140 acctctcacatgtcaga 156  Q
    | |||||||||||||||    
T  5784802 aactctcacatgtcaga 5784786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 40 - 222
Target Start/End: Original strand, 33679315 - 33679506
Alignment:
Q  40 aattgtgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgtta 139  Q
    |||| ||||||||| |||||||||| || ||||| | |||||||||||||||||||| |||| ||||| ||| |||||||    | ||||||| ||||||    
T  33679315 aattatgcgaaatatcaatttaatccttgaatttgttaaatgtcaatcaagttagtccttctattcaaacggagcgttaacaaggttgacgtggccgtta 33679414  T
Q  140 acctctcacatgtcagatgtcacataggca---------ttggctgataatagcaaacatttcaaatgaccaaattgattgatttgcagaaa 222  Q
    ||||||||||||||||| | ||| ||||||         ||| | ||||||| |||||||||| || ||| |||||||||||||||||||||    
T  33679415 acctctcacatgtcagacgccacgtaggcagggactaatttgaccgataataacaaacatttcgaaggactaaattgattgatttgcagaaa 33679506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 38 - 155
Target Start/End: Original strand, 45379139 - 45379256
Alignment:
Q  38 ttaattgtgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgt 137  Q
    |||||| ||||||||| ||||||||||  ||||||| | |||||||||||||||||||| |||||||||| ||| || |||| || | ||||||| ||||    
T  45379139 ttaattatgcgaaatatcaatttaatccctaaatttgttaaatgtcaatcaagttagtccttctgttcaaacggagcattaacggggttgacgtggccgt 45379238  T
Q  138 taacctctcacatgtcag 155  Q
    ||||||||||||| ||||    
T  45379239 taacctctcacatatcag 45379256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 40 - 156
Target Start/End: Original strand, 35478143 - 35478259
Alignment:
Q  40 aattgtgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgtta 139  Q
    |||| ||| ||||| ||||||||||  | ||||||| |||||||||||||||||| | |||||||||| | | ||||||| || ||| ||||||||||||    
T  35478143 aattatgcaaaatatcaatttaatccctgaatttattaaatgtcaatcaagttagcccttctgttcaaacagagcgttaacggggctaacgtgaccgtta 35478242  T
Q  140 acctctcacatgtcaga 156  Q
    |||||||||||||||||    
T  35478243 acctctcacatgtcaga 35478259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 115 - 165
Target Start/End: Complemental strand, 25172995 - 25172945
Alignment:
Q  115 gttaatggtgctgacgtgaccgttaacctctcacatgtcagatgtcacata 165  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  25172995 gttaacggtgctgacgtgaccgttaacctctcacatgtcagatgtcacata 25172945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 40 - 153
Target Start/End: Complemental strand, 27952535 - 27952422
Alignment:
Q  40 aattgtgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgtta 139  Q
    |||| ||||||||| ||||||||||  | ||||| | || |||||||||| |||||| ||||| |||| |||| |||||| || ||||||||| ||||||    
T  27952535 aattatgcgaaatatcaatttaatccctgaatttgttaattgtcaatcaatttagtccttctggtcaaacgggccgttaacggggctgacgtggccgtta 27952436  T
Q  140 acctctcacatgtc 153  Q
    |||||| |||||||    
T  27952435 acctcttacatgtc 27952422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 80 - 221
Target Start/End: Original strand, 47264220 - 47264370
Alignment:
Q  80 tgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgttaacctctcacatgtcagatgtcacataggca---------t 170  Q
    |||||||||| |||||| ||||| |||| ||||  ||||| |||||||||||| |||||||||||| |||||||| | | ||| ||||||         |    
T  47264220 tgtcaatcaatttagtccttctggtcaaacgggctgttaacggtgctgacgtggccgttaacctcttacatgtcatacgccacgtaggcagggactaatt 47264319  T
Q  171 tggctgataatagcaaacatttcaaatgaccaaattgattgatttgcagaa 221  Q
    |||||||||||  |||||||||  || ||| ||||||||||||||||||||    
T  47264320 tggctgataattccaaacattttgaaggactaaattgattgatttgcagaa 47264370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 40 - 169
Target Start/End: Original strand, 11152601 - 11152730
Alignment:
Q  40 aattgtgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgtta 139  Q
    |||| ||||||||| ||||||||||    ||||| | |||||||||||||||||||| ||| |||||| ||| |  |||| |  ||| ||||| ||||||    
T  11152601 aattatgcgaaatatcaatttaatcccagaatttgttaaatgtcaatcaagttagtccttcagttcaaacggagtattaacgaggctaacgtggccgtta 11152700  T
Q  140 acctctcacatgtcagatgtcacataggca 169  Q
    ||||||||||||||||| | ||| ||||||    
T  11152701 acctctcacatgtcagacgccacgtaggca 11152730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 170 - 236
Target Start/End: Original strand, 18180674 - 18180740
Alignment:
Q  170 ttggctgataatagcaaacatttcaaatgaccaaattgattgatttgcagaaaatgttttggctttc 236  Q
    ||||| ||||||| ||||||||||||| ||| ||| ||||| ||||||| ||||||||| |||||||    
T  18180674 ttggccgataataacaaacatttcaaaggactaaactgattaatttgcaaaaaatgtttcggctttc 18180740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 119
Target Start/End: Original strand, 18180556 - 18180635
Alignment:
Q  40 aattgtgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaa 119  Q
    |||| ||||||||| |||||||||   | ||||| | |||||||||||||| ||||| |||||||||| ||| |||||||    
T  18180556 aattatgcgaaatatcaatttaattcctgaatttgttaaatgtcaatcaaggtagtccttctgttcaaacggagcgttaa 18180635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 221
Target Start/End: Original strand, 35478282 - 35478333
Alignment:
Q  170 ttggctgataatagcaaacatttcaaatgaccaaattgattgatttgcagaa 221  Q
    ||||| ||||||| |||||||||| || ||| ||||||||||||||||||||    
T  35478282 ttggccgataataacaaacatttcgaaggactaaattgattgatttgcagaa 35478333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 151
Target Start/End: Complemental strand, 43870320 - 43870238
Alignment:
Q  69 aatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgttaacctctcacatg 151  Q
    ||||| ||| || |||||||| |||||| ||  || || | |||||||||| |||| ||||||| ||||||||||||||||||    
T  43870320 aatttgtcatatctcaatcaaattagtccttacgtccatttggggcgttaacggtgatgacgtggccgttaacctctcacatg 43870238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 77; Significance: 8e-36; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 40 - 231
Target Start/End: Complemental strand, 42003525 - 42003325
Alignment:
Q  40 aattgtgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgtta 139  Q
    |||| ||||||||| ||||||||||| | ||||| | ||||||||||||||||||||||||||||||  ||| |||||||  | ||||||||||||||||    
T  42003525 aattatgcgaaatatcaatttaatctctgaatttgttaaatgtcaatcaagttagtcattctgttcacacggagcgttaacagggctgacgtgaccgtta 42003426  T
Q  140 acctctcacatgtcagatgtcacataggca---------ttggctgataatagcaaacatttcaaatgaccaaattgattgatttgcagaaaatgttttg 230  Q
    ||||||||||||||||| |  || ||||||         ||||| || |||| |||||||||| |||||| ||||||||||||||||||||| | |||||    
T  42003425 acctctcacatgtcagacgctacgtaggcatggactaatttggccgaaaataacaaacatttcgaatgactaaattgattgatttgcagaaatttttttg 42003326  T
Q  231 g 231  Q
    |    
T  42003325 g 42003325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 37 - 236
Target Start/End: Complemental strand, 37418807 - 37418599
Alignment:
Q  37 tttaattgtgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccg 136  Q
    ||||||| ||| ||||| |||| |||||  ||||||| | ||||||||||||||||||||||||||||||| | | ||||||| |  |||||| || |||    
T  37418807 tttaattatgcaaaatatcaatctaatccctaaatttgttaaatgtcaatcaagttagtcattctgttcaaacagagcgttaacgtggctgacatggccg 37418708  T
Q  137 ttaacctctcacatgtcagatgtcacataggca---------ttggctgataatagcaaacatttcaaatgaccaaattgattgatttgcagaaaatgtt 227  Q
    |||||||||||||||||||| | ||  ||||||         ||||  ||||||| |||||||||| || ||| ||||||||||||||||||||||||||    
T  37418707 ttaacctctcacatgtcagacggcatgtaggcagggactaatttggtcgataataacaaacatttcgaaggactaaattgattgatttgcagaaaatgtt 37418608  T
Q  228 ttggctttc 236  Q
    ||| |||||    
T  37418607 ttgactttc 37418599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 38 - 236
Target Start/End: Complemental strand, 42880848 - 42880641
Alignment:
Q  38 ttaattgtgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgt 137  Q
    |||||| ||||||||| ||||||||||  ||||||| | |||| ||||||||||||||| || ||||||| ||| ||||||| |  ||||| ||| ||||    
T  42880848 ttaattatgcgaaatatcaatttaatccataaatttgttaaatttcaatcaagttagtccttttgttcaaacggagcgttaacgaggctgatgtggccgt 42880749  T
Q  138 taacctctcacatgtcagatgtcacataggca---------ttggctgataatagcaaacatttcaaatgaccaaattgattgatttgcagaaaatgttt 228  Q
    ||||||||||||||||||| | ||| ||||||         ||||| ||| ||| |||||||||  |  ||| ||||||||||||||| |||||||||||    
T  42880748 taacctctcacatgtcagacgccacgtaggcagggactaatttggccgatgataacaaacattttgacggactaaattgattgatttgtagaaaatgttt 42880649  T
Q  229 tggctttc 236  Q
    || |||||    
T  42880648 tgactttc 42880641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 40 - 169
Target Start/End: Complemental strand, 28248210 - 28248081
Alignment:
Q  40 aattgtgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgtta 139  Q
    |||| ||||||||| ||||||||||  | ||||| | |||||||||||||||||| ||||| ||||||  || ||||||| || ||||||||| ||||||    
T  28248210 aattatgcgaaatatcaatttaatccctgaatttgttaaatgtcaatcaagttaggcattcagttcaaatggagcgttaacggggctgacgtggccgtta 28248111  T
Q  140 acctctcacatgtcagatgtcacataggca 169  Q
    ||||||||||||||||| | ||| ||||||    
T  28248110 acctctcacatgtcagacgccacgtaggca 28248081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 40 - 156
Target Start/End: Original strand, 11021589 - 11021705
Alignment:
Q  40 aattgtgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgtta 139  Q
    |||| ||||||||| ||||||||||  | ||||| | |||||||||||||||||||| ||| |||||| ||| ||||||| || ||||||||| ||||||    
T  11021589 aattatgcgaaatatcaatttaatccctgaatttgttaaatgtcaatcaagttagtccttcagttcaaacggagcgttaacggggctgacgtggccgtta 11021688  T
Q  140 acctctcacatgtcaga 156  Q
    | |||||||||||||||    
T  11021689 aactctcacatgtcaga 11021705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 40 - 154
Target Start/End: Complemental strand, 41708465 - 41708351
Alignment:
Q  40 aattgtgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgtta 139  Q
    |||| ||||||||| ||||||||||  | ||||| | || |||||||||| |||||| ||||| |||| |||| |||||| || ||||||||| ||||||    
T  41708465 aattatgcgaaatatcaatttaatccctgaatttgttaattgtcaatcaatttagtccttctggtcaaacgggccgttaacggggctgacgtggccgtta 41708366  T
Q  140 acctctcacatgtca 154  Q
    |||||| ||||||||    
T  41708365 acctcttacatgtca 41708351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 40 - 231
Target Start/End: Complemental strand, 41177 - 40978
Alignment:
Q  40 aattgtgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgtta 139  Q
    |||| ||||||||| ||||||||||  | ||||||| || |||||||||| |||||| ||||||| ||  ||| |||||| || ||||||||| ||||||    
T  41177 aattatgcgaaatatcaatttaatccctgaatttattaattgtcaatcaatttagtccttctgttgaaatgggccgttaacggggctgacgtggccgtta 41078  T
Q  140 acctctcacatgtcagatgtcacat---aggca-----ttggctgataatagcaaacatttcaaatgaccaaattgattgatttgcagaaaatgttttgg 231  Q
    |||||| ||| |||| | ||||| |   ||| |     ||||| ||||||| |||||||||  || ||| ||||||||||||||||||||| | ||||||    
T  41077 acctcttacaagtcatacgtcacgtggcagggactaatttggccgataataacaaacattttgaaggactaaattgattgatttgcagaaatttttttgg 40978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 48 - 143
Target Start/End: Original strand, 33257 - 33352
Alignment:
Q  48 gaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgttaacct 143  Q
    |||||| ||||||||||  | ||||| | |||||||||||||||||||| || ||||||| ||| ||||||| || ||||||||| ||||||||||    
T  33257 gaaatatcaatttaatccctgaatttgttaaatgtcaatcaagttagtccttttgttcaaacggagcgttaacggggctgacgtggccgttaacct 33352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 176 - 236
Target Start/End: Original strand, 35499 - 35559
Alignment:
Q  176 gataatagcaaacatttcaaatgaccaaattgattgatttgcagaaaatgttttggctttc 236  Q
    |||||||  ||||||||| || ||| ||||||||||||||||||||||| |||||||||||    
T  35499 gataataataaacatttcgaaggactaaattgattgatttgcagaaaatattttggctttc 35559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 222
Target Start/End: Complemental strand, 15373923 - 15373732
Alignment:
Q  40 aattgtgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgtta 139  Q
    |||| ||||||||| |||||||||   | ||||| | || |||||||||| |||||| ||||| |||| | || |||||| |  |||| |||| ||||||    
T  15373923 aattatgcgaaatatcaatttaattcctgaatttgttaattgtcaatcaatttagtccttctggtcaaacaggccgttaacgaggctggcgtggccgtta 15373824  T
Q  140 acctctcacatgtcagatgtcacataggca---------ttggctgataatagcaaacatttcaaatgaccaaattgattgatttgcagaaa 222  Q
    |||||| |||||||| | | ||| ||||||         ||||||||||||  |||||||||  || ||| |||||||||||||||||||||    
T  15373823 acctcttacatgtcatacgccacgtaggcagggactaatttggctgataattccaaacattttgaaggactaaattgattgatttgcagaaa 15373732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 115 - 162
Target Start/End: Complemental strand, 38149975 - 38149928
Alignment:
Q  115 gttaatggtgctgacgtgaccgttaacctctcacatgtcagatgtcac 162  Q
    ||||| ||||||||||||  ||||||||||||||||||||||||||||    
T  38149975 gttaacggtgctgacgtggtcgttaacctctcacatgtcagatgtcac 38149928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 169
Target Start/End: Original strand, 11312944 - 11313036
Alignment:
Q  77 aaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgttaacctctcacatgtcagatgtcacataggca 169  Q
    ||||||||||||| ||||||  || || |||| || | ||||| | ||||||| |   ||||||||||||||||||| |||||||||||||||    
T  11312944 aaatgtcaatcaatttagtccctccgtccaattggagtgttaacgatgctgacatagtcgttaacctctcacatgtctgatgtcacataggca 11313036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 81 - 236
Target Start/End: Original strand, 57498 - 57658
Alignment:
Q  81 gtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgttaacctctcacatgtcagatgtcacataggca---------tt 171  Q
    |||||||||||||||| |||||||||||||||||||||| ||||||||||||  ||||||||    |||||| ||| | ||||||||||         ||    
T  57498 gtcaatcaagttagtctttctgttcaatcggggcgttaacggtgctgacgtggtcgttaacc----acatgttagacgccacataggcagagactaattt 57593  T
Q  172 ggctgataatagcaaacatttcaaatgaccaaattgattgatttgcagaaaatgttttggctttc 236  Q
    ||| ||||||| |||||||||||||| |||||||||||||||||| ||||||||||||| |||||    
T  57594 ggccgataataacaaacatttcaaataaccaaattgattgatttgtagaaaatgttttgactttc 57658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 7e-27; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 40 - 169
Target Start/End: Original strand, 17950617 - 17950746
Alignment:
Q  40 aattgtgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgtta 139  Q
    |||| ||||||||| ||||||||||  | ||||| | ||||||||||||||| |||| ||| |||||| ||| ||||||| || ||||||||| ||||||    
T  17950617 aattatgcgaaatatcaatttaatccctgaatttgttaaatgtcaatcaagtcagtccttcagttcaaacggagcgttaacggggctgacgtggccgtta 17950716  T
Q  140 acctctcacatgtcagatgtcacataggca 169  Q
    ||||||||||||||||||| ||| ||||||    
T  17950717 acctctcacatgtcagatgccacgtaggca 17950746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 40 - 222
Target Start/End: Original strand, 30639667 - 30639858
Alignment:
Q  40 aattgtgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgtta 139  Q
    |||| ||| ||||| ||||||||||| | ||||| | ||||||||||||| |||| | || ||||||| ||| || |||| || ||||||||| ||||||    
T  30639667 aattatgcaaaatatcaatttaatctatgaatttgttaaatgtcaatcaacttagcccttatgttcaaacggagcattaacggggctgacgtggccgtta 30639766  T
Q  140 acctctcacatgtcagatgtcacataggca---------ttggctgataatagcaaacatttcaaatgaccaaattgattgatttgcagaaa 222  Q
    ||||||||||||||| | | ||| ||||||         ||||| ||||||| |||||||||| |||||| |||||||||||||||||||||    
T  30639767 acctctcacatgtcaaacgccacgtaggcagggagtaatttggccgataataacaaacatttcgaatgactaaattgattgatttgcagaaa 30639858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 40 - 154
Target Start/End: Complemental strand, 4646251 - 4646137
Alignment:
Q  40 aattgtgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgtta 139  Q
    |||| ||||||||| ||||||||||  ||||||| | || |||||||||| |||||| ||||| |||| |||| |||||| || ||||||||| ||||||    
T  4646251 aattatgcgaaatatcaatttaatccctaaatttgttaattgtcaatcaatttagtccttctggtcaaacgggccgttaacggggctgacgtggccgtta 4646152  T
Q  140 acctctcacatgtca 154  Q
    |||||| ||||||||    
T  4646151 acctcttacatgtca 4646137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 80 - 221
Target Start/End: Complemental strand, 29114771 - 29114621
Alignment:
Q  80 tgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgttaacctctcacatgtcagatgtcacataggca---------t 170  Q
    |||||||||| |||||| ||||| |||| |||| | |||| || ||||||||| |||||||||||| |||||||| | | ||| ||||||         |    
T  29114771 tgtcaatcaatttagtccttctggtcaaacgggccattaacggggctgacgtggccgttaacctcttacatgtcatacgccacgtaggcagggactaatt 29114672  T
Q  171 tggctgataatagcaaacatttcaaatgaccaaattgattgatttgcagaa 221  Q
    |||||||||||  |||||||||  || ||| ||||||||||||||||||||    
T  29114671 tggctgataattccaaacattttgaaggactaaattgattgatttgcagaa 29114621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 119
Target Start/End: Original strand, 35174454 - 35174526
Alignment:
Q  47 cgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaa 119  Q
    ||||||| ||||||||| | | ||||| | |||||||||||||||||||| ||| |||||| ||| |||||||    
T  35174454 cgaaatatcaatttaatttctgaatttgttaaatgtcaatcaagttagtccttcagttcaaacggagcgttaa 35174526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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