View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17199_low_44 (Length: 240)
Name: NF17199_low_44
Description: NF17199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17199_low_44 |
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Alignment Details
Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 16 - 221
Target Start/End: Original strand, 5401246 - 5401451
Alignment:
| Q |
16 |
atgaaaggaaaaaagtggacaaatgtgagcttcttagggtattttgtatattaccattgaaataaaaggctaatgagaataatgtgtaatgcactaacct |
115 |
Q |
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| T |
5401246 |
atgaaaggaaaaaagtggacaaatgtgagcttcttagggtattttgtatattaccattgaaataaaaggctaatgagaataatgtgtaatgcactaacct |
5401345 |
T |
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| Q |
116 |
cttcgaacaagatatcctctaatgtgtaatagaaattgggtgtgtcgagacgtggcacgttctctgtgaagggggactcgtgaggtttgatcttaccgat |
215 |
Q |
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| T |
5401346 |
cttcgaacaagatatcctctaatgtgtaatagaaattgggtgtgtcgaggcgtggcacatcctctgtgaagggggactcatgaggtttgatcttaccgat |
5401445 |
T |
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| Q |
216 |
gatttc |
221 |
Q |
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|||||| |
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| T |
5401446 |
gatttc |
5401451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 104 - 215
Target Start/End: Original strand, 5395187 - 5395298
Alignment:
| Q |
104 |
atgcactaacctcttcgaacaagatatcctctaatgtgtaatagaaattgggtgtgtcgagacgtggcacgttctctgtgaagggggactcgtgaggttt |
203 |
Q |
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| T |
5395187 |
atgcaccaacctcttctaacaagatatcctcctgtgtgtaatagaaattgggtgtgacaaggcgtggcacatcctccgtgaagggggactcatgggcctt |
5395286 |
T |
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| Q |
204 |
gatcttaccgat |
215 |
Q |
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| T |
5395287 |
gatcttaccgat |
5395298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 111 - 214
Target Start/End: Original strand, 5391383 - 5391486
Alignment:
| Q |
111 |
aacctcttcgaacaagatatcctctaatgtgtaatagaaattgggtgtgtcgagacgtggcacgttctctgtgaagggggactcgtgaggtttgatctta |
210 |
Q |
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| T |
5391383 |
aacctcttctagcaagatatcctcttgtgtgtgatagaaattgggtgtgacaaggcgtggcacatcctccgtgaaaggggactcatggggcttgatctta |
5391482 |
T |
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| Q |
211 |
ccga |
214 |
Q |
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|||| |
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| T |
5391483 |
ccga |
5391486 |
T |
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