View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17199_low_46 (Length: 235)
Name: NF17199_low_46
Description: NF17199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17199_low_46 |
 | |
|
| [»] scaffold0144 (1 HSPs) |
| | |
|
| [»] scaffold0133 (3 HSPs) |
| | |
|
| [»] scaffold0230 (1 HSPs) |
| | |
|
| [»] scaffold0511 (1 HSPs) |
| | |
|
| [»] scaffold0256 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0144 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: scaffold0144
Description:
Target: scaffold0144; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 37536 - 37311
Alignment:
| Q |
1 |
agcacagttatttgatgatgacatctggtctttgttcaaacaacatgcttttggagcaaatagagaagggcgtgcagagcttgtggaaataggccaaaag |
100 |
Q |
| |
|
||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37536 |
agcacagttatctgatgatgacatctggtcgttgttcaaacaacatgcttttggagcaaatagagaagggcgtgcagagcttgtggaaataggccaaaag |
37437 |
T |
|
| Q |
101 |
ttagtgagaaaatgtgtgggttcacctcttgctgctaaagtattgggaagccttttgcgctttaaaagcgatgaacatcaatggatttctgtggtggaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37436 |
ttagtgagaaaatgtgtgggttcacctcttgctgctaaagtattgggaagccttttgcgctttaaaagcgatgaacatcaatggatttctgtggtggaaa |
37337 |
T |
|
| Q |
201 |
gtgagttttggaatttagctgatgat |
226 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
37336 |
gtgagttttggaatttagctgatgat |
37311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 210; Significance: 1e-115; HSPs: 11)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 16658058 - 16657833
Alignment:
| Q |
1 |
agcacagttatttgatgatgacatctggtctttgttcaaacaacatgcttttggagcaaatagagaagggcgtgcagagcttgtggaaataggccaaaag |
100 |
Q |
| |
|
||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
16658058 |
agcacagttatctgatgatgacatctggtcgttgttcaaacaacatgcttttggagcaaatagagaagggcgtgcagatcttgtggaaataggccaaaag |
16657959 |
T |
|
| Q |
101 |
ttagtgagaaaatgtgtgggttcacctcttgctgctaaagtattgggaagccttttgcgctttaaaagcgatgaacatcaatggatttctgtggtggaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16657958 |
ttagtgagaaaatgtgtgggttcacctcttgctgctaaagtattgggaagccttttacgctttaaaagcgatgaacatcaatggatttctgtggtggaaa |
16657859 |
T |
|
| Q |
201 |
gtgagttttggaatttagctgatgat |
226 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
16657858 |
gtgagttttggaatttagctgatgat |
16657833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 16868115 - 16868340
Alignment:
| Q |
1 |
agcacagttatttgatgatgacatctggtctttgttcaaacaacatgcttttggagcaaatagagaagggcgtgcagagcttgtggaaataggccaaaag |
100 |
Q |
| |
|
||||||||||| ||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16868115 |
agcacagttatctgatgatgacatctgatcgttgttcaaacaacatgcttttggagcaaatagagaagggcgtgcagagcttgtggaaataggccaaaag |
16868214 |
T |
|
| Q |
101 |
ttagtgagaaaatgtgtgggttcacctcttgctgctaaagtattgggaagccttttgcgctttaaaagcgatgaacatcaatggatttctgtggtggaaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
16868215 |
ttagtgagaaaatgtgtgggttcacctcttgctgctaaagtattgggaagccttttgcgctttaaaagcgatgaacatcaatggacttctgtggtggaaa |
16868314 |
T |
|
| Q |
201 |
gtgagttttggaatttagctgatgat |
226 |
Q |
| |
|
||||||||||||||||||| |||||| |
|
|
| T |
16868315 |
gtgagttttggaatttagcagatgat |
16868340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 7 - 218
Target Start/End: Complemental strand, 17069546 - 17069335
Alignment:
| Q |
7 |
gttatttgatgatgacatctggtctttgttcaaacaacatgcttttggagcaaatagagaagggcgtgcagagcttgtggaaataggccaaaagttagtg |
106 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17069546 |
gttatctgatgatgacatctggtctttgttcaaacaacatgcttttggagcaaagagagaagggcgtgcagagcttgtggaaataggccaaaagttagtg |
17069447 |
T |
|
| Q |
107 |
agaaaatgtgtgggttcacctcttgctgctaaagtattgggaagccttttgcgctttaaaagcgatgaacatcaatggatttctgtggtggaaagtgagt |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17069446 |
agaaaatgtgtgggttcacctcttgctgctaaagtattgggaagccttttgcgctttaaaagcgatgaacatcaatggatttctgtggtggaaagtgagt |
17069347 |
T |
|
| Q |
207 |
tttggaatttag |
218 |
Q |
| |
|
|||||||||||| |
|
|
| T |
17069346 |
tttggaatttag |
17069335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 16837726 - 16837525
Alignment:
| Q |
1 |
agcacagttatttgatgatgacatctggtctttgttcaaacaacatgcttttggagcaaatagagaagggcgtgcagagcttgtggaaataggccaaaag |
100 |
Q |
| |
|
||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16837726 |
agcacagttatctgatgatgacatctggtcgttgttcaaacaacatgcttttggagcaaatagagaagggcgtgcagagcttgtggaaataggccaaaag |
16837627 |
T |
|
| Q |
101 |
ttagtgagaaaatgtgtgggttcacctcttgctgctaaagtattgggaagccttttgcgctttaaaagcgatgaacatcaatggatttctgtggtggaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16837626 |
ttagtgagaaaatgtgtgggttcacctcttgctgctaaagtattgggaagccttttgcgctttaaaagcgatgaacatcaatggatttctgtggtggaaa |
16837527 |
T |
|
| Q |
201 |
gt |
202 |
Q |
| |
|
|| |
|
|
| T |
16837526 |
gt |
16837525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 7 - 217
Target Start/End: Complemental strand, 16797209 - 16796999
Alignment:
| Q |
7 |
gttatttgatgatgacatctggtctttgttcaaacaacatgcttttggagcaaatagagaagggcgtgcagagcttgtggaaataggccaaaagttagtg |
106 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| ||||||| | ||||||||| |
|
|
| T |
16797209 |
gttatctgatgatgacatctggtctttgttcaaacaacaagcttttggagcaaatagagaagagcgtgcagagcttgtggcaataggcaagaagttagtg |
16797110 |
T |
|
| Q |
107 |
agaaaatgtgtgggttcacctcttgctgctaaagtattgggaagccttttgcgctttaaaagcgatgaacatcaatggatttctgtggtggaaagtgagt |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||||||||||||||||| |||||||||| | |
|
|
| T |
16797109 |
agaaaatgtgtgggttcacctcttgctgctaaagtattgggaagcagtttgcgctttacaagcgacgaacatcaatggatttctgtactggaaagtgaat |
16797010 |
T |
|
| Q |
207 |
tttggaattta |
217 |
Q |
| |
|
||||||||||| |
|
|
| T |
16797009 |
tttggaattta |
16796999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 19 - 227
Target Start/End: Complemental strand, 16787995 - 16787787
Alignment:
| Q |
19 |
tgacatctggtctttgttcaaacaacatgcttttggagcaaatagagaagggcgtgcagagcttgtggaaataggccaaaagttagtgagaaaatgtgtg |
118 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| ||| ||||||||||| |||||||||||||||||||||||| | ||||||||||||||||||||| |
|
|
| T |
16787995 |
tgacatctggtctttgttcaaacaacaagctttcagagaaaatagagaagaacgtgcagagcttgtggaaataggcaagaagttagtgagaaaatgtgtg |
16787896 |
T |
|
| Q |
119 |
ggttcacctcttgctgctaaagtattgggaagccttttgcgctttaaaagcgatgaacatcaatggatttctgtggtggaaagtgagttttggaatttag |
218 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| |||||| |||| |||||| |||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
16787895 |
ggttcaactcttgctgctaaagtattgggaagcagtttgcgatttacaagcgacgaacatcaatggatttctgtactggaaagtgagttttggaatttaa |
16787796 |
T |
|
| Q |
219 |
ctgatgatg |
227 |
Q |
| |
|
|||| |||| |
|
|
| T |
16787795 |
ctgaggatg |
16787787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 8 - 227
Target Start/End: Complemental strand, 16987493 - 16987274
Alignment:
| Q |
8 |
ttatttgatgatgacatctggtctttgttcaaacaacatgcttttggagcaaatagagaagggcgtgcagagcttgtggaaataggccaaaagttagtga |
107 |
Q |
| |
|
|||| ||||||| ||||||||||||||||||||||||| ||||| |||| |||| |||||| |||||||||||||||||||||||| | ||||| |||| |
|
|
| T |
16987493 |
ttatctgatgatcacatctggtctttgttcaaacaacaagctttcggagaaaatggagaagagcgtgcagagcttgtggaaataggtaagaagttggtga |
16987394 |
T |
|
| Q |
108 |
gaaaatgtgtgggttcacctcttgctgctaaagtattgggaagccttttgcgctttaaaagcgatgaacatcaatggatttctgtggtggaaagtgagtt |
207 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||| ||||| | ||| || |||||||||||||||||||| ||||||||||| | |
|
|
| T |
16987393 |
gaaaatttgtgggttcacctcttgctgctaaagtattgggaagcagtttgcaacgtgaaactgacgaacatcaatggatttctgtactggaaagtgagat |
16987294 |
T |
|
| Q |
208 |
ttggaatttagctgatgatg |
227 |
Q |
| |
|
|||||||||| |||| |||| |
|
|
| T |
16987293 |
ttggaatttacctgaggatg |
16987274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 8 - 212
Target Start/End: Original strand, 18873312 - 18873516
Alignment:
| Q |
8 |
ttatttgatgatgacatctggtctttgttcaaacaacatgcttttggagcaaatagagaagggcgtgcagagcttgtggaaataggccaaaagttagtga |
107 |
Q |
| |
|
|||| |||||||| |||||||| |||||| |||||| | ||||||| | |||||||||||| ||||||||||||||||| ||||||| | ||||||||| |
|
|
| T |
18873312 |
ttatctgatgatgccatctggtatttgtttaaacaaaaagcttttgaaacaaatagagaagagcgtgcagagcttgtggcaataggcaaggagttagtga |
18873411 |
T |
|
| Q |
108 |
gaaaatgtgtgggttcacctcttgctgctaaagtattgggaagccttttgcgctttaaaagcgatgaacatcaatggatttctgtggtggaaagtgagtt |
207 |
Q |
| |
|
|||||||||||||||| |||||||| || |||||| | |||||||||||||||||||||| || |||||||||||| ||||||| ||||||| |||| |
|
|
| T |
18873412 |
gaaaatgtgtgggttctcctcttgccgcaaaagtactaggaagccttttgcgctttaaaactgaggaacatcaatggctttctgtaaaggaaagtaagtt |
18873511 |
T |
|
| Q |
208 |
ttgga |
212 |
Q |
| |
|
||||| |
|
|
| T |
18873512 |
ttgga |
18873516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 8 - 212
Target Start/End: Original strand, 18806318 - 18806522
Alignment:
| Q |
8 |
ttatttgatgatgacatctggtctttgttcaaacaacatgcttttggagcaaatagagaagggcgtgcagagcttgtggaaataggccaaaagttagtga |
107 |
Q |
| |
|
|||| |||||||| ||||||| |||||| |||||| | ||||||| | |||||||||||| ||| ||||||||||||| ||||||| | ||||||||| |
|
|
| T |
18806318 |
ttatctgatgatgcaatctggtatttgtttaaacaaaaagcttttgaaacaaatagagaagagcgagcagagcttgtggcaataggcaaggagttagtga |
18806417 |
T |
|
| Q |
108 |
gaaaatgtgtgggttcacctcttgctgctaaagtattgggaagccttttgcgctttaaaagcgatgaacatcaatggatttctgtggtggaaagtgagtt |
207 |
Q |
| |
|
||||||||||||||||||||||||| || |||||| | |||||||||||||||||||||| || |||||||||||| ||||||| ||||||| |||| |
|
|
| T |
18806418 |
gaaaatgtgtgggttcacctcttgccgcaaaagtactaggaagccttttgcgctttaaaactgaggaacatcaatggctttctgtaaaggaaagtaagtt |
18806517 |
T |
|
| Q |
208 |
ttgga |
212 |
Q |
| |
|
||||| |
|
|
| T |
18806518 |
ttgga |
18806522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 38 - 222
Target Start/End: Complemental strand, 16781108 - 16780924
Alignment:
| Q |
38 |
aaacaacatgcttttggagcaaatagagaagggcgtgcagagcttgtggaaataggccaaaagttagtgagaaaatgtgtgggttcacctcttgctgcta |
137 |
Q |
| |
|
|||||||| ||||||||| | ||| | |||| || ||||||||||| | ||||||| | || |||||| |||||||||||||||||| |||||||| | |
|
|
| T |
16781108 |
aaacaacacgcttttggacctaatggggaagagcctgcagagcttgcagcaataggcaaggagatagtgataaaatgtgtgggttcaccacttgctgcca |
16781009 |
T |
|
| Q |
138 |
aagtattgggaagccttttgcgctttaaaagcgatgaacatcaatggatttctgtggtggaaagtgagttttggaatttagctga |
222 |
Q |
| |
|
| || ||||||||||||||||||||||||| || |||||||||||| ||||||| |||||||||| ||||||| ||| |||| |
|
|
| T |
16781008 |
aggttttgggaagccttttgcgctttaaaaatgaggaacatcaatggctttctgtaaaggaaagtgagctttggaagttatctga |
16780924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 22 - 223
Target Start/End: Complemental strand, 16843828 - 16843627
Alignment:
| Q |
22 |
catctggtctttgttcaaacaacatgcttttggagcaaatagagaagggcgtgcagagcttgtggaaataggccaaaagttagtgagaaaatgtgtgggt |
121 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||||||| | ||||||| |||||||| ||||| |||||| | || |||| ||||||||||||||| |
|
|
| T |
16843828 |
catctggtctttgttcaagcaacacgcttttggagctgaaagagaagaacgtgcagaccttgtaacaataggtaaggagatagttagaaaatgtgtgggt |
16843729 |
T |
|
| Q |
122 |
tcacctcttgctgctaaagtattgggaagccttttgcgctttaaaagcgatgaacatcaatggatttctgtggtggaaagtgagttttggaatttagctg |
221 |
Q |
| |
|
|| ||||||||||| |||||| | ||||||||| |||| ||||||| || ||| ||||||| ||||| | |||||||||| ||||||||||| ||| |
|
|
| T |
16843728 |
tcgcctcttgctgccaaagtactaggaagccttctgcggtttaaaactgaggaatgtcaatggctttctataaaggaaagtgagatttggaatttatctg |
16843629 |
T |
|
| Q |
222 |
at |
223 |
Q |
| |
|
|| |
|
|
| T |
16843628 |
at |
16843627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0133 (Bit Score: 143; Significance: 3e-75; HSPs: 3)
Name: scaffold0133
Description:
Target: scaffold0133; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 8 - 222
Target Start/End: Complemental strand, 12888 - 12674
Alignment:
| Q |
8 |
ttatttgatgatgacatctggtctttgttcaaacaacatgcttttggagcaaatagagaagggcgtgcagagcttgtggaaataggccaaaagttagtga |
107 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| ||||||||||||||||| ||||||| |||||||||||| |
|
|
| T |
12888 |
ttatctgatgatgacatctggtctttgttcaaacaacaagcttttgtagcaaatagagaagagcgtgcagagcttgtggcaataggcaaaaagttagtga |
12789 |
T |
|
| Q |
108 |
gaaaatgtgtgggttcacctcttgctgctaaagtattgggaagccttttgcgctttaaaagcgatgaacatcaatggatttctgtggtggaaagtgagtt |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||| |||| |||||| ||| || |||||||||||||||||||| | ||||||||||| |
|
|
| T |
12788 |
gaaaatgtgtgggttcacctcttgctgctaaagtattaggaagcagtttgtgctttacaagtgacgaacatcaatggatttctgtactagaaagtgagtt |
12689 |
T |
|
| Q |
208 |
ttggaatttagctga |
222 |
Q |
| |
|
||||| |||| |||| |
|
|
| T |
12688 |
ttggagtttacctga |
12674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0133; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 8 - 216
Target Start/End: Complemental strand, 8546 - 8338
Alignment:
| Q |
8 |
ttatttgatgatgacatctggtctttgttcaaacaacatgcttttggagcaaatagagaagggcgtgcagagcttgtggaaataggccaaaagttagtga |
107 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||| |||||||||| |||| |||||| ||||||||||||||||| ||||||| |||||||||||| |
|
|
| T |
8546 |
ttatctgatgatgacatctggtctttgttcaaacaacaagcttttggagaaaatcgagaagagcgtgcagagcttgtggcaataggcaaaaagttagtga |
8447 |
T |
|
| Q |
108 |
gaaaatgtgtgggttcacctcttgctgctaaagtattgggaagccttttgcgctttaaaagcgatgaacatcaatggatttctgtggtggaaagtgagtt |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||| |||| ||| || |||| | |||||||||||||||||||| |||||||||| || |
|
|
| T |
8446 |
gaaaatgtgtgggttcacctcttgctgctaaagtattgggtagcagtttgtgctgtacaagcaacgaacatcaatggatttctgtactggaaagtgaatt |
8347 |
T |
|
| Q |
208 |
ttggaattt |
216 |
Q |
| |
|
||||||||| |
|
|
| T |
8346 |
ttggaattt |
8338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0133; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 8 - 222
Target Start/End: Complemental strand, 18094 - 17880
Alignment:
| Q |
8 |
ttatttgatgatgacatctggtctttgttcaaacaacatgcttttggagcaaatagagaagggcgtgcagagcttgtggaaataggccaaaagttagtga |
107 |
Q |
| |
|
|||| |||||||||||| ||||| || || |||||||||||| ||||| ||||| | || | ||| |||||||||| | |||||| | || |||||| |
|
|
| T |
18094 |
ttatatgatgatgacatttggtcattatttaaacaacatgctgttggaccaaatggggaggagcgcgcagagcttgcagcaataggtaaggagatagtga |
17995 |
T |
|
| Q |
108 |
gaaaatgtgtgggttcacctcttgctgctaaagtattgggaagccttttgcgctttaaaagcgatgaacatcaatggatttctgtggtggaaagtgagtt |
207 |
Q |
| |
|
||||||| |||||||||||||||||||| || || |||||||||||| ||||||||||||| || |||||||||||| ||||||| |||||||||| | |
|
|
| T |
17994 |
gaaaatgcgtgggttcacctcttgctgccaaggttttgggaagccttctgcgctttaaaagtgaggaacatcaatggctttctgtaaaggaaagtgaggt |
17895 |
T |
|
| Q |
208 |
ttggaatttagctga |
222 |
Q |
| |
|
|||||||||| |||| |
|
|
| T |
17894 |
ttggaatttatctga |
17880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 107; Significance: 9e-54; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 8 - 222
Target Start/End: Original strand, 38939481 - 38939695
Alignment:
| Q |
8 |
ttatttgatgatgacatctggtctttgttcaaacaacatgcttttggagcaaatagagaagggcgtgcagagcttgtggaaataggccaaaagttagtga |
107 |
Q |
| |
|
|||| |||||| ||||| ||||| || || |||||||||||||||||| || || | |||| || |||||||||||| | ||||||| | || |||||| |
|
|
| T |
38939481 |
ttatatgatgacgacatttggtcattatttaaacaacatgcttttggaccagatggggaagagcatgcagagcttgtagcaataggcaaggagatagtga |
38939580 |
T |
|
| Q |
108 |
gaaaatgtgtgggttcacctcttgctgctaaagtattgggaagccttttgcgctttaaaagcgatgaacatcaatggatttctgtggtggaaagtgagtt |
207 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || |||||||||||| ||||||| |||||||||| | |
|
|
| T |
38939581 |
gaaaatgtgtgggttcacctcttgctgccaaagtattgggaagccttttgcgctttaaaagtgaggaacatcaatggttttctgtaaaggaaagtgagct |
38939680 |
T |
|
| Q |
208 |
ttggaatttagctga |
222 |
Q |
| |
|
|||||||||| |||| |
|
|
| T |
38939681 |
ttggaatttatctga |
38939695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 8 - 222
Target Start/End: Original strand, 7053388 - 7053602
Alignment:
| Q |
8 |
ttatttgatgatgacatctggtctttgttcaaacaacatgcttttggagcaaatagagaagggcgtgcagagcttgtggaaataggccaaaagttagtga |
107 |
Q |
| |
|
|||| |||||||||||| ||| ||||||||||||| | |||||||| ||||| |||||| || ||||||||||| ||||||| | || |||||| |
|
|
| T |
7053388 |
ttatctgatgatgacatttggcctttgttcaaacactgtacttttggaccaaatggagaagagcatgcagagcttgccacaataggcaaggagatagtga |
7053487 |
T |
|
| Q |
108 |
gaaaatgtgtgggttcacctcttgctgctaaagtattgggaagccttttgcgctttaaaagcgatgaacatcaatggatttctgtggtggaaagtgagtt |
207 |
Q |
| |
|
||||||||||||||||||||||||| || |||||||| ||||||||||| || |||||| | || ||||||||||| ||||| | |||||| |||| |
|
|
| T |
7053488 |
gaaaatgtgtgggttcacctcttgcagcaaaagtattaggaagccttttacgatttaaacgtgagaaacatcaatggctttctataaaggaaagcaagtt |
7053587 |
T |
|
| Q |
208 |
ttggaatttagctga |
222 |
Q |
| |
|
|||||||||| |||| |
|
|
| T |
7053588 |
ttggaatttatctga |
7053602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0230 (Bit Score: 102; Significance: 9e-51; HSPs: 1)
Name: scaffold0230
Description:
Target: scaffold0230; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 8 - 212
Target Start/End: Complemental strand, 4712 - 4507
Alignment:
| Q |
8 |
ttatttgatgatgacatctggtctttgttcaaacaacatgcttttggagcaaatagagaagggcgtgcagagcttgtggaaataggccaaaagttagtga |
107 |
Q |
| |
|
|||| |||||||| |||||||| |||||| |||||| | ||||||| | |||||||||||| ||||||||||||||||| ||||||| | ||||||||| |
|
|
| T |
4712 |
ttatctgatgatgccatctggtatttgtttaaacaaaaagcttttgaaacaaatagagaagagcgtgcagagcttgtggcaataggcaaggagttagtga |
4613 |
T |
|
| Q |
108 |
gaaaatgtgtgggttcacctcttgctgctaaagtattgggaagcc-ttttgcgctttaaaagcgatgaacatcaatggatttctgtggtggaaagtgagt |
206 |
Q |
| |
|
|||||||||||||||| ||||||||||| |||||| | ||||||| |||||||||||||||| || |||||||||||| ||||||| ||||||| ||| |
|
|
| T |
4612 |
gaaaatgtgtgggttcgcctcttgctgccaaagtactaggaagcctttttgcgctttaaaagtgaggaacatcaatggctttctgtaaaggaaagtaagt |
4513 |
T |
|
| Q |
207 |
tttgga |
212 |
Q |
| |
|
|||||| |
|
|
| T |
4512 |
tttgga |
4507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0511 (Bit Score: 97; Significance: 8e-48; HSPs: 1)
Name: scaffold0511
Description:
Target: scaffold0511; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 8 - 192
Target Start/End: Complemental strand, 9392 - 9208
Alignment:
| Q |
8 |
ttatttgatgatgacatctggtctttgttcaaacaacatgcttttggagcaaatagagaagggcgtgcagagcttgtggaaataggccaaaagttagtga |
107 |
Q |
| |
|
|||| |||||||| |||||||| |||||| |||||| | ||||||| | |||||||||||| ||||||||||||||||| ||||||| | ||||||||| |
|
|
| T |
9392 |
ttatctgatgatgccatctggtatttgtttaaacaaaaagcttttgaaacaaatagagaagagcgtgcagagcttgtggcaataggcaaggagttagtga |
9293 |
T |
|
| Q |
108 |
gaaaatgtgtgggttcacctcttgctgctaaagtattgggaagccttttgcgctttaaaagcgatgaacatcaatggatttctgt |
192 |
Q |
| |
|
|||||||||||||||| |||||||| || |||||| | ||||| ||||||||||||||||| || |||||||||||| ||||||| |
|
|
| T |
9292 |
gaaaatgtgtgggttcgcctcttgccgccaaagtactaggaagtcttttgcgctttaaaagtgaggaacatcaatggctttctgt |
9208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 13 - 222
Target Start/End: Complemental strand, 13378125 - 13377916
Alignment:
| Q |
13 |
tgatgatgacatctggtctttgttcaaacaacatgcttttggagcaaatagagaagggcgtgcagagcttgtggaaataggccaaaagttagtgagaaaa |
112 |
Q |
| |
|
|||||| ||||| ||||||||||| |||| ||||||| ||||| | ||| | |||| |||||||||||||| | ||||||| | || ||||||||||| |
|
|
| T |
13378125 |
tgatgaagacatttggtctttgtttaaactacatgctattggacctaatggggaagagcgtgcagagcttgcagcaataggcaaggagatagtgagaaaa |
13378026 |
T |
|
| Q |
113 |
tgtgtgggttcacctcttgctgctaaagtattgggaagccttttgcgctttaaaagcgatgaacatcaatggatttctgtggtggaaagtgagttttgga |
212 |
Q |
| |
|
||||||||||||||||||||||| || || ||||||||||||| |||||||||||| || |||||||||||| ||||||| ||||||| || |||||| |
|
|
| T |
13378025 |
tgtgtgggttcacctcttgctgccaaggttttgggaagcctttcgcgctttaaaagtgaggaacatcaatggctttctgtaaaggaaagtaagctttgga |
13377926 |
T |
|
| Q |
213 |
atttagctga |
222 |
Q |
| |
|
||||| |||| |
|
|
| T |
13377925 |
atttatctga |
13377916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0256 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: scaffold0256
Description:
Target: scaffold0256; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 104 - 227
Target Start/End: Complemental strand, 9094 - 8971
Alignment:
| Q |
104 |
gtgagaaaatgtgtgggttcacctcttgctgctaaagtattgggaagccttttgcgctttaaaagcgatgaacatcaatggatttctgtggtggaaagtg |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||| |||||| |||||||||| || |||||||||||| | ||||| |||||||| |
|
|
| T |
9094 |
gtgagaaaatgtgtgggttcacctcttgctgccaaagtattgggaagtcttttgtgctttaaaagtgaggaacatcaatggctctctgtcaaggaaagtg |
8995 |
T |
|
| Q |
204 |
agttttggaatttagctgatgatg |
227 |
Q |
| |
|
|| ||||||||||| |||| |||| |
|
|
| T |
8994 |
agctttggaatttaactgaggatg |
8971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 32 - 93
Target Start/End: Complemental strand, 30207146 - 30207085
Alignment:
| Q |
32 |
ttgttcaaacaacatgcttttggagcaaatagagaagggcgtgcagagcttgtggaaatagg |
93 |
Q |
| |
|
|||||||||||| |||| |||||| ||||||||||| |||||||||||||||||||||||| |
|
|
| T |
30207146 |
ttgttcaaacaatatgcatttggacaaaatagagaagagcgtgcagagcttgtggaaatagg |
30207085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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