View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17199_low_47 (Length: 227)

Name: NF17199_low_47
Description: NF17199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17199_low_47
NF17199_low_47
[»] chr2 (4 HSPs)
chr2 (1-216)||(8670688-8670903)
chr2 (1-216)||(8713465-8713680)
chr2 (149-198)||(8669189-8669238)
chr2 (4-40)||(8689715-8689751)
[»] chr5 (3 HSPs)
chr5 (147-199)||(10554554-10554606)
chr5 (148-199)||(4084888-4084939)
chr5 (148-199)||(6476783-6476834)
[»] scaffold0176 (1 HSPs)
scaffold0176 (148-195)||(26600-26647)
[»] chr8 (4 HSPs)
chr8 (153-184)||(17724779-17724810)
chr8 (159-216)||(23445549-23445606)
chr8 (148-184)||(8372922-8372958)
chr8 (148-184)||(37732835-37732871)
[»] chr7 (2 HSPs)
chr7 (148-199)||(7668490-7668541)
chr7 (148-184)||(3689279-3689315)
[»] chr1 (3 HSPs)
chr1 (148-198)||(30663970-30664020)
chr1 (147-193)||(46812186-46812232)
chr1 (148-184)||(4439214-4439250)
[»] chr6 (1 HSPs)
chr6 (147-195)||(5861893-5861941)
[»] chr4 (1 HSPs)
chr4 (148-184)||(599309-599345)
[»] chr3 (4 HSPs)
chr3 (148-184)||(10847917-10847953)
chr3 (148-196)||(45081399-45081447)
chr3 (153-193)||(48413333-48413373)
chr3 (147-199)||(55373699-55373751)


Alignment Details
Target: chr2 (Bit Score: 216; Significance: 1e-119; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 8670903 - 8670688
Alignment:
Q  1 caaatattatcatagaccaagattatgtgctcacagtctattgcaaagagatcacttatatcataatcttagtctaacttttgtttgaaacattttatta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8670903 caaatattatcatagaccaagattatgtgctcacagtctattgcaaagagatcacttatatcataatcttagtctaacttttgtttgaaacattttatta 8670804  T
Q  101 gttcagttccatgtacatacagttatgaaacattttgtttgtgtaatcgttaacacctggtgtcaacagattcgttgacaccaattcacaaccattcatg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8670803 gttcagttccatgtacatacagttatgaaacattttgtttgtgtaatcgttaacacctggtgtcaacagattcgttgacaccaattcacaaccattcatg 8670704  T
Q  201 agaccattggattcat 216  Q
    ||||||||||||||||    
T  8670703 agaccattggattcat 8670688  T

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Target: chr2; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 8713680 - 8713465
Alignment:
Q  1 caaatattatcatagaccaagattatgtgctcacagtctattgcaaagagatcacttatatcataatcttagtctaacttttgtttgaaacattttatta 100  Q
    |||||||||||| |||| || ||||||||||||||||||||| ||||| ||||||||||||||||||  |||||||||||||||||||||||||||||||    
T  8713680 caaatattatcacagacaaacattatgtgctcacagtctattccaaagcgatcacttatatcataatagtagtctaacttttgtttgaaacattttatta 8713581  T
Q  101 gttcagttccatgtacatacagttatgaaacattttgtttgtgtaatcgttaacacctggtgtcaacagattcgttgacaccaattcacaaccattcatg 200  Q
    ||||||||||||||||| ||| |||||||||||||||| || |||| |||||||||| |||||||||||| |  |||||||||| || ||||||||||||    
T  8713580 gttcagttccatgtacacacaattatgaaacattttgtctgcgtaaccgttaacaccaggtgtcaacagagttattgacaccaaatcccaaccattcatg 8713481  T
Q  201 agaccattggattcat 216  Q
    ||||| ||||||||||    
T  8713480 agaccgttggattcat 8713465  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 149 - 198
Target Start/End: Complemental strand, 8669238 - 8669189
Alignment:
Q  149 gttaacacctggtgtcaacagattcgttgacaccaattcacaaccattca 198  Q
    ||||||||| |||||||||||||||||||||||||| || |||| |||||    
T  8669238 gttaacaccaggtgtcaacagattcgttgacaccaaatcccaacaattca 8669189  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 40
Target Start/End: Complemental strand, 8689751 - 8689715
Alignment:
Q  4 atattatcatagaccaagattatgtgctcacagtcta 40  Q
    ||||||||||||||||| ||||||| |||||||||||    
T  8689751 atattatcatagaccaacattatgttctcacagtcta 8689715  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 147 - 199
Target Start/End: Original strand, 10554554 - 10554606
Alignment:
Q  147 tcgttaacacctggtgtcaacagattcgttgacaccaattcacaaccattcat 199  Q
    ||||| ||||| ||||||||| |||||||||||||||| || |||||||||||    
T  10554554 tcgttgacaccaggtgtcaacggattcgttgacaccaaatctcaaccattcat 10554606  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 148 - 199
Target Start/End: Original strand, 4084888 - 4084939
Alignment:
Q  148 cgttaacacctggtgtcaacagattcgttgacaccaattcacaaccattcat 199  Q
    |||| |||||||||||||||  ||||||||||||||| || |||||||||||    
T  4084888 cgttgacacctggtgtcaacgaattcgttgacaccaaatctcaaccattcat 4084939  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 148 - 199
Target Start/End: Complemental strand, 6476834 - 6476783
Alignment:
Q  148 cgttaacacctggtgtcaacagattcgttgacaccaattcacaaccattcat 199  Q
    |||| ||||| ||||||||| |||||||||||||||| || |||||||||||    
T  6476834 cgttgacaccaggtgtcaacggattcgttgacaccaaatctcaaccattcat 6476783  T

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Target: scaffold0176 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 148 - 195
Target Start/End: Original strand, 26600 - 26647
Alignment:
Q  148 cgttaacacctggtgtcaacagattcgttgacaccaattcacaaccat 195  Q
    |||| ||||| ||||||||| |||||||||||||||| ||||||||||    
T  26600 cgttgacaccaggtgtcaacggattcgttgacaccaaatcacaaccat 26647  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 153 - 184
Target Start/End: Original strand, 17724779 - 17724810
Alignment:
Q  153 acacctggtgtcaacagattcgttgacaccaa 184  Q
    ||||||||||||||||||||||||||||||||    
T  17724779 acacctggtgtcaacagattcgttgacaccaa 17724810  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 216
Target Start/End: Original strand, 23445549 - 23445606
Alignment:
Q  159 ggtgtcaacagattcgttgacaccaattcacaaccattcatgagaccattggattcat 216  Q
    |||||||| ||||||||||||||| | || |||| |||||||| ||| ||||||||||    
T  23445549 ggtgtcaatagattcgttgacacctaatcccaacgattcatgaaaccgttggattcat 23445606  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 184
Target Start/End: Original strand, 8372922 - 8372958
Alignment:
Q  148 cgttaacacctggtgtcaacagattcgttgacaccaa 184  Q
    |||| ||||||||||||||| ||||||||||||||||    
T  8372922 cgttgacacctggtgtcaacggattcgttgacaccaa 8372958  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 184
Target Start/End: Original strand, 37732835 - 37732871
Alignment:
Q  148 cgttaacacctggtgtcaacagattcgttgacaccaa 184  Q
    |||| ||||||||||||||| ||||||||||||||||    
T  37732835 cgttgacacctggtgtcaacggattcgttgacaccaa 37732871  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 148 - 199
Target Start/End: Original strand, 7668490 - 7668541
Alignment:
Q  148 cgttaacacctggtgtcaacagattcgttgacaccaattcacaaccattcat 199  Q
    |||| ||||| ||||||||| |||||||||||||||| || |||||||||||    
T  7668490 cgttgacaccaggtgtcaacggattcgttgacaccaaatctcaaccattcat 7668541  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 184
Target Start/End: Complemental strand, 3689315 - 3689279
Alignment:
Q  148 cgttaacacctggtgtcaacagattcgttgacaccaa 184  Q
    |||| ||||||| ||||||||||||||||||||||||    
T  3689315 cgttgacacctgatgtcaacagattcgttgacaccaa 3689279  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 198
Target Start/End: Complemental strand, 30664020 - 30663970
Alignment:
Q  148 cgttaacacctggtgtcaacagattcgttgacaccaattcacaaccattca 198  Q
    |||| ||||||||||||||| |||||||||||||||| || ||||| ||||    
T  30664020 cgttgacacctggtgtcaacggattcgttgacaccaaatctcaaccgttca 30663970  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 193
Target Start/End: Complemental strand, 46812232 - 46812186
Alignment:
Q  147 tcgttaacacctggtgtcaacagattcgttgacaccaattcacaacc 193  Q
    ||||||||||| ||||||||| |||||||||||||||| || |||||    
T  46812232 tcgttaacaccaggtgtcaacggattcgttgacaccaaatctcaacc 46812186  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 184
Target Start/End: Complemental strand, 4439250 - 4439214
Alignment:
Q  148 cgttaacacctggtgtcaacagattcgttgacaccaa 184  Q
    |||| ||||||||||||||| ||||||||||||||||    
T  4439250 cgttgacacctggtgtcaacggattcgttgacaccaa 4439214  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 195
Target Start/End: Original strand, 5861893 - 5861941
Alignment:
Q  147 tcgttaacacctggtgtcaacagattcgttgacaccaattcacaaccat 195  Q
    ||||| ||||| |||| ||||||||||||||||||||| || |||||||    
T  5861893 tcgttgacaccaggtgccaacagattcgttgacaccaaatctcaaccat 5861941  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 184
Target Start/End: Complemental strand, 599345 - 599309
Alignment:
Q  148 cgttaacacctggtgtcaacagattcgttgacaccaa 184  Q
    |||| ||||||||||||||| ||||||||||||||||    
T  599345 cgttgacacctggtgtcaacggattcgttgacaccaa 599309  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 184
Target Start/End: Complemental strand, 10847953 - 10847917
Alignment:
Q  148 cgttaacacctggtgtcaacagattcgttgacaccaa 184  Q
    |||||||||| ||||||||||||||| ||||||||||    
T  10847953 cgttaacaccaggtgtcaacagattcattgacaccaa 10847917  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 196
Target Start/End: Complemental strand, 45081447 - 45081399
Alignment:
Q  148 cgttaacacctggtgtcaacagattcgttgacaccaattcacaaccatt 196  Q
    |||| |||||| |||||||| |||||||||||||||| || ||||||||    
T  45081447 cgttgacacctagtgtcaacggattcgttgacaccaaatctcaaccatt 45081399  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 193
Target Start/End: Original strand, 48413333 - 48413373
Alignment:
Q  153 acacctggtgtcaacagattcgttgacaccaattcacaacc 193  Q
    ||||| ||||||||| |||||||||||||||| ||||||||    
T  48413333 acaccaggtgtcaacggattcgttgacaccaaatcacaacc 48413373  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 199
Target Start/End: Complemental strand, 55373751 - 55373699
Alignment:
Q  147 tcgttaacacctggtgtcaacagattcgttgacaccaattcacaaccattcat 199  Q
    ||||| ||||| ||||||||| |||||||||||||||| |  |||||||||||    
T  55373751 tcgttgacaccaggtgtcaacggattcgttgacaccaaattccaaccattcat 55373699  T

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