View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17199_low_48 (Length: 227)
Name: NF17199_low_48
Description: NF17199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17199_low_48 |
 | |
|
| [»] chr1 (11 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 11)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 7 - 227
Target Start/End: Complemental strand, 10984053 - 10983833
Alignment:
| Q |
7 |
gttgtcttgtagcagtcaaattattggacaaagccaagtccaatggtcaagatttcatcaatgaagttgtcaccattggtaggattcaccatgttaatgt |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10984053 |
gttgtcttgtagcagtcaaattattggacaaagccaagtccaatggtcaagatttcatcaatgaagttgtcaccattggtaggattcaccatgttaatgt |
10983954 |
T |
|
| Q |
107 |
ggtacaccttattggtttttgcgtgcagggttcaaaacgtgttcttatatatgaattcatgccaaatgggtcactggaaaaatacatattttctcataat |
206 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10983953 |
ggtacaccttattggtttttgcgtggagggttcaaaacgtgttcttatatatgaattcatgccaaatgggtcactggaaaaatacatattttctcataat |
10983854 |
T |
|
| Q |
207 |
gaagagagtaattccttgagt |
227 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
10983853 |
gaagagagtaattccttgagt |
10983833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 10 - 204
Target Start/End: Complemental strand, 10915125 - 10914931
Alignment:
| Q |
10 |
gtcttgtagcagtcaaattattggacaaagccaagtccaatggtcaagatttcatcaatgaagttgtcaccattggtaggattcaccatgttaatgtggt |
109 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
10915125 |
gtcttgtagcagttaaattattggacaaagccaagtccaacggtcaagattttatcaatgaagttgtcaccatcggtaggattcaccatgttaatgtggc |
10915026 |
T |
|
| Q |
110 |
acaccttattggtttttgcgtgcagggttcaaaacgtgttcttatatatgaattcatgccaaatgggtcactggaaaaatacatattttctcata |
204 |
Q |
| |
|
|||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| |
|
|
| T |
10915025 |
acaccttattggtttttgtgtggagggttcaaaacgtgttcttatatatgaattcatgccaaatggatcactcgaaaaatacatattttctcata |
10914931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 10 - 204
Target Start/End: Complemental strand, 11011426 - 11011232
Alignment:
| Q |
10 |
gtcttgtagcagtcaaattattggacaaagccaagtccaatggtcaagatttcatcaatgaagttgtcaccattggtaggattcaccatgttaatgtggt |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| || ||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
11011426 |
gtcttgtagcagtcaaattattggacaaagccaagtccagtgatcaagattttgtcaatgaagttgctaccattggtaggattcaccatgttaatgtggt |
11011327 |
T |
|
| Q |
110 |
acaccttattggtttttgcgtgcagggttcaaaacgtgttcttatatatgaattcatgccaaatgggtcactggaaaaatacatattttctcata |
204 |
Q |
| |
|
|| || ||||||||||| ||| | ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| |
|
|
| T |
11011326 |
gcagctcattggtttttgtgtggaaggttcaaaacgtgttcttatatatgaattcatgccaaatggatcacttgaaaaatacatattttctcata |
11011232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 10 - 227
Target Start/End: Original strand, 11004596 - 11004813
Alignment:
| Q |
10 |
gtcttgtagcagtcaaattattggacaaagccaagtccaatggtcaagatttcatcaatgaagttgtcaccattggtaggattcaccatgttaatgtggt |
109 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| |||| ||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
11004596 |
gtcttgtagcggtcaaattattggacaaagccaagaccaacggtcaagattttgtcaatgaagttactaccattggtaggattcaccatgtcaatgtggt |
11004695 |
T |
|
| Q |
110 |
acaccttattggtttttgcgtgcagggttcaaaacgtgttcttatatatgaattcatgccaaatgggtcactggaaaaatacatattttctcataatgaa |
209 |
Q |
| |
|
||| || ||||| ||||| ||| ||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| || |||| |
|
|
| T |
11004696 |
acaactcattggattttgtgtggagggttcaaaacgtgctcttatatatgaattcatgccaaatggatcactggaaaaatacatattttctcttattgaa |
11004795 |
T |
|
| Q |
210 |
gagagtaattccttgagt |
227 |
Q |
| |
|
|||||||| || |||||| |
|
|
| T |
11004796 |
gagagtaactctttgagt |
11004813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 10 - 227
Target Start/End: Complemental strand, 11008264 - 11008047
Alignment:
| Q |
10 |
gtcttgtagcagtcaaattattggacaaagccaagtccaatggtcaagatttcatcaatgaagttgtcaccattggtaggattcaccatgttaatgtggt |
109 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||| | || |||||| |||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
11008264 |
gtcttgtagcagtcaaattattggacagtgccaagtccaacgatcgagattttgtcaatgaagttgctaccattggtaggattcaccatgttaatgtggt |
11008165 |
T |
|
| Q |
110 |
acaccttattggtttttgcgtgcagggttcaaaacgtgttcttatatatgaattcatgccaaatgggtcactggaaaaatacatattttctcataatgaa |
209 |
Q |
| |
|
||| || |||||||| || ||| | ||||||||||||||||| ||||||||||| ||||||||||| ||||| |||||||||||||||||||||| ||| |
|
|
| T |
11008164 |
acaactcattggtttctgtgtggaaggttcaaaacgtgttctgatatatgaatttatgccaaatggatcactagaaaaatacatattttctcataccgaa |
11008065 |
T |
|
| Q |
210 |
gagagtaattccttgagt |
227 |
Q |
| |
|
|||| | ||||||||||| |
|
|
| T |
11008064 |
gagaattattccttgagt |
11008047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 10 - 227
Target Start/End: Complemental strand, 11033717 - 11033500
Alignment:
| Q |
10 |
gtcttgtagcagtcaaattattggacaaagccaagtccaatggtcaagatttcatcaatgaagttgtcaccattggtaggattcaccatgttaatgtggt |
109 |
Q |
| |
|
|||| |||||||||||||||||||| | |||||||||||| | || |||||| |||||||||||| |||||||||||||| ||||||||||||||||| |
|
|
| T |
11033717 |
gtctggtagcagtcaaattattggatagagccaagtccaacgatcgagattttgtcaatgaagttgctaccattggtaggatccaccatgttaatgtggt |
11033618 |
T |
|
| Q |
110 |
acaccttattggtttttgcgtgcagggttcaaaacgtgttcttatatatgaattcatgccaaatgggtcactggaaaaatacatattttctcataatgaa |
209 |
Q |
| |
|
||| || ||||||||||| ||| | ||||||||||||||||| ||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||| |
|
|
| T |
11033617 |
acaactcattggtttttgtgtggaaggttcaaaacgtgttctgatatatgaatttatgccaaatggatcactcgaaaaatacatattttctcataatgaa |
11033518 |
T |
|
| Q |
210 |
gagagtaattccttgagt |
227 |
Q |
| |
|
|| | | ||||||||||| |
|
|
| T |
11033517 |
gaaaattattccttgagt |
11033500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 10 - 204
Target Start/End: Complemental strand, 10903962 - 10903768
Alignment:
| Q |
10 |
gtcttgtagcagtcaaattattggacaaagccaagtccaatggtcaagatttcatcaatgaagttgtcaccattggtaggattcaccatgttaatgtggt |
109 |
Q |
| |
|
|||||| ||| || |||||||||||||||||||| ||||||||||||||||| ||||||||||||| ||||| |||||||||||||| ||||||||||| |
|
|
| T |
10903962 |
gtcttgcagcggtgaaattattggacaaagccaaatccaatggtcaagattttatcaatgaagttgctaccatcggtaggattcaccacgttaatgtggt |
10903863 |
T |
|
| Q |
110 |
acaccttattggtttttgcgtgcagggttcaaaacgtgttcttatatatgaattcatgccaaatgggtcactggaaaaatacatattttctcata |
204 |
Q |
| |
|
||| |||||||| ||||| ||| | || ||||| |||| ||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
10903862 |
acaacttattggattttgtgtggatgggtcaaagcgtgctctaatatatgaattcatgccaaatgggtcacttgaaaaatacatattttctcata |
10903768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 12 - 219
Target Start/End: Original strand, 11028190 - 11028390
Alignment:
| Q |
12 |
cttgtagcagtcaaattattggacaaagccaagtccaatggtcaagatttcatcaatgaagttgtcaccattggtaggattcaccatgttaatgtggtac |
111 |
Q |
| |
|
||||||||||| ||||||||||||||| |||||||| | |||| | |||||||| ||| ||||||||||||||||||||| |||||||||||| |
|
|
| T |
11028190 |
cttgtagcagtaaaattattggacaaaaccaagtccgacggtcta-------tcaatgaaattgctaccattggtaggattcaccatcttaatgtggtac |
11028282 |
T |
|
| Q |
112 |
accttattggtttttgcgtgcagggttcaaaacgtgttcttatatatgaattcatgccaaatgggtcactggaaaaatacatattttctcataatgaaga |
211 |
Q |
| |
|
| || |||||||||| ||| |||||||||||| || ||||||||||||||| ||||||||||| | ||| |||||||| ||||||||||||| |||||| |
|
|
| T |
11028283 |
aactcattggtttttatgtggagggttcaaaacatgctcttatatatgaatttatgccaaatggattactcgaaaaatatatattttctcatattgaaga |
11028382 |
T |
|
| Q |
212 |
gagtaatt |
219 |
Q |
| |
|
|||||||| |
|
|
| T |
11028383 |
gagtaatt |
11028390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 164 - 227
Target Start/End: Complemental strand, 10974628 - 10974565
Alignment:
| Q |
164 |
catgccaaatgggtcactggaaaaatacatattttctcataatgaagagagtaattccttgagt |
227 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||| | |||||||||||||||||||||| |
|
|
| T |
10974628 |
catgccaaatgggtaactggaaaaatacatattttctcacattgaagagagtaattccttgagt |
10974565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 60 - 127
Target Start/End: Complemental strand, 9464601 - 9464534
Alignment:
| Q |
60 |
ttcatcaatgaagttgtcaccattggtaggattcaccatgttaatgtggtacaccttattggtttttg |
127 |
Q |
| |
|
|||||||||||||||| |||||||| | ||||||||||||||||||||| ||||| ||||| ||||| |
|
|
| T |
9464601 |
ttcatcaatgaagttgctaccattggaacgattcaccatgttaatgtggttcacctaattggcttttg |
9464534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 60 - 127
Target Start/End: Complemental strand, 9489033 - 9488966
Alignment:
| Q |
60 |
ttcatcaatgaagttgtcaccattggtaggattcaccatgttaatgtggtacaccttattggtttttg |
127 |
Q |
| |
|
|||||||||||||||| || ||||| | ||||||||||||||| ||||| ||||| ||||| ||||| |
|
|
| T |
9489033 |
ttcatcaatgaagttgctacgattggaacgattcaccatgttaacgtggttcacctaattggcttttg |
9488966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University