View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17199_low_50 (Length: 210)
Name: NF17199_low_50
Description: NF17199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17199_low_50 |
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| [»] chr8 (4 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 3 - 210
Target Start/End: Complemental strand, 5269086 - 5268880
Alignment:
| Q |
3 |
tcgagtgagatgaaaaacagagtatttgtaaaaacagagcatatgaaaagagtgaaaaacataccatgagagaattgaaaggcatagtgggaaggagttg |
102 |
Q |
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| T |
5269086 |
tcgagtga-atgaaaaacagagtatttttaaaaacagagcatatgaaaagagtgaaaaacataccatgagagaattgaaaggcatagtgggaaggagttg |
5268988 |
T |
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| Q |
103 |
attgaacaaatcggtgaaacctaattcatcaagaacccaattatcactatcacaatcaattatggttttatcgaagtcgaaaactatcacaatattatta |
202 |
Q |
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| T |
5268987 |
attgaacaaatcggtgaaacctaattcatcaacaacccaattatcactatcacaatcaattatggttttatcgaagtcgaaaactatcacaatattatta |
5268888 |
T |
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| Q |
203 |
gacatttt |
210 |
Q |
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|||||||| |
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| T |
5268887 |
gacatttt |
5268880 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 57 - 210
Target Start/End: Complemental strand, 5249798 - 5249645
Alignment:
| Q |
57 |
aaaaacataccatgagagaattgaaaggcatagtgggaaggagttgattgaacaaatcggtgaaacctaattcatcaagaacccaattatcactatcaca |
156 |
Q |
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| T |
5249798 |
aaaaacataccatgagagaattccaaggcatagtgggaaggagctgattgaacaaatcagtgaaacccaattcatcaataacccaattatcactgtcaca |
5249699 |
T |
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| Q |
157 |
atcaattatggttttatcgaagtcgaaaactatcacaatattattagacatttt |
210 |
Q |
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| T |
5249698 |
atcaattatggttttatcaaaatcaaaaactacaacaatattattagacatttt |
5249645 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 43 - 210
Target Start/End: Original strand, 5272736 - 5272903
Alignment:
| Q |
43 |
atatgaaaagagtgaaaaacataccatgagagaattgaaaggcatagtgggaaggagttgattgaacaaatcggtgaaacctaattcatcaagaacccaa |
142 |
Q |
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| T |
5272736 |
atatgaagagaataaaaaacataccatgacggaattccaaggcattgtgggaaggagctgattgaacaaatcggtgaaacccaattcatcaatcaaccaa |
5272835 |
T |
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| Q |
143 |
ttatcactatcacaatcaattatggttttatcgaagtcgaaaactatcacaatattattagacatttt |
210 |
Q |
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| T |
5272836 |
ttatcactatcacaatcaatgatggttttgtcaaagtcaaaaataataacaatattattagacatttt |
5272903 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 12 - 210
Target Start/End: Original strand, 5276676 - 5276874
Alignment:
| Q |
12 |
atgaaaaacagagtatttgtaaaaacagagcatatgaaaagagtgaaaaacataccatgagagaattgaaaggcatagtgggaaggagttgattgaacaa |
111 |
Q |
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|||||||||||||||||| ||||||||||| |||||| || | |||| |||||||| | |||||| ||||||| || |||||||||||||||||||| |
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| T |
5276676 |
atgaaaaacagagtattttacaaaacagagcacatgaaaggaataaaaagcataccataacagaattccaaggcattgtaggaaggagttgattgaacaa |
5276775 |
T |
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| Q |
112 |
atcggtgaaacctaattcatcaagaacccaattatcactatcacaatcaattatggttttatcgaagtcgaaaactatcacaatattattagacatttt |
210 |
Q |
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| T |
5276776 |
atcagtgaaacccaattcatcaatcaaccaattatcactgtcacaatcaatgatcgttttgtcaaaatcaaaaacaataacaatgttattagtcatttt |
5276874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 76; Significance: 2e-35; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 75 - 174
Target Start/End: Complemental strand, 19569249 - 19569150
Alignment:
| Q |
75 |
aattgaaaggcatagtgggaaggagttgattgaacaaatcggtgaaacctaattcatcaagaacccaattatcactatcacaatcaattatggttttatc |
174 |
Q |
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|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| | ||||||||||||||||||||||||||| ||||||||| |
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| T |
19569249 |
aattgaaaggcatagtaagaaggagttgattgaacaaatcgatgaaacctaattcatcaacatcccaattatcactatcacaatcaattaaggttttatc |
19569150 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 59; Significance: 3e-25; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 64 - 186
Target Start/End: Original strand, 26315722 - 26315844
Alignment:
| Q |
64 |
taccatgagagaattgaaaggcatagtgggaaggagttgattgaacaaatcggtgaaacctaattcatcaagaacccaattatcactatcacaatcaatt |
163 |
Q |
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|||||||||| | || || ||||| ||||||| |||||||||||||||||| |||||||||||||||||| |||||| ||||| || ||||| ||||| |
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| T |
26315722 |
taccatgagatagttcaatggcatggtgggaaagagttgattgaacaaatcattgaaacctaattcatcaacaacccagttatcgctgtcacattcaata |
26315821 |
T |
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| Q |
164 |
atggttttatcgaagtcgaaaac |
186 |
Q |
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| T |
26315822 |
atggttttgtcaaagtcgaaaac |
26315844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 83 - 199
Target Start/End: Original strand, 43110849 - 43110965
Alignment:
| Q |
83 |
ggcatagtgggaaggagttgattgaacaaatcggtgaaacctaattcatcaagaacccaattatcactatcacaatcaattatggttttatcgaagtcga |
182 |
Q |
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| T |
43110849 |
ggcatggtgggaacaagttcattgaacaaatcagtgaaacccaattcatcaacaacccagttatcactgtcacattcaactatggttttgtcaaagtcaa |
43110948 |
T |
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| Q |
183 |
aaactatcacaatatta |
199 |
Q |
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| T |
43110949 |
aaaccacaacaatatta |
43110965 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 119 - 162
Target Start/End: Original strand, 43105420 - 43105463
Alignment:
| Q |
119 |
aaacctaattcatcaagaacccaattatcactatcacaatcaat |
162 |
Q |
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| T |
43105420 |
aaaccaaactcatcaagaacccaattatcactatcacattcaat |
43105463 |
T |
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