View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17199_low_52 (Length: 206)
Name: NF17199_low_52
Description: NF17199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17199_low_52 |
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Alignment Details
Target: chr1 (Bit Score: 144; Significance: 6e-76; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 144; E-Value: 6e-76
Query Start/End: Original strand, 26 - 186
Target Start/End: Complemental strand, 5395036 - 5394874
Alignment:
| Q |
26 |
tgtttttaacaaattgaaattatatattactaaccttctttggaattatattttctgtgttaaattaatcttggaacttatatttagtcacttaaacaag |
125 |
Q |
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| T |
5395036 |
tgtttttaacaaattgaaattatatattactaacattctttggaattatattttctgtgttaaattaatcttggaacttatatttagtcacttaaacaag |
5394937 |
T |
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| Q |
126 |
aattag--tatcgcatacattctttttagcaaatagtttcacatctatttattttttaagggg |
186 |
Q |
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| T |
5394936 |
aattagtatatcgcatacattctttttagcaaatagtttcacatctatttattttttaggggg |
5394874 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 65 - 130
Target Start/End: Complemental strand, 5400139 - 5400074
Alignment:
| Q |
65 |
ttggaattatattttctgtgttaaattaatcttggaacttatatttagtcacttaaacaagaatta |
130 |
Q |
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| T |
5400139 |
ttggaataatatttgcttggttaaattaatcttggaacttatatttagtcacctagacaacaatta |
5400074 |
T |
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