View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17199_low_6 (Length: 497)

Name: NF17199_low_6
Description: NF17199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17199_low_6
NF17199_low_6
[»] chr3 (19 HSPs)
chr3 (24-491)||(51878203-51878671)
chr3 (19-301)||(32180426-32180712)
chr3 (21-273)||(19606618-19606877)
chr3 (40-251)||(45879216-45879430)
chr3 (18-296)||(40640310-40640600)
chr3 (47-273)||(7758139-7758359)
chr3 (78-273)||(47930371-47930572)
chr3 (18-273)||(7568430-7568685)
chr3 (78-300)||(26000675-26000904)
chr3 (43-273)||(38392332-38392568)
chr3 (18-298)||(49359306-49359594)
chr3 (18-205)||(44880873-44881063)
chr3 (154-304)||(47871210-47871365)
chr3 (18-119)||(4556627-4556731)
chr3 (18-94)||(53811865-53811942)
chr3 (154-213)||(11019700-11019759)
chr3 (157-219)||(40744200-40744262)
chr3 (154-203)||(36689674-36689723)
chr3 (154-190)||(5125442-5125478)
[»] chr6 (9 HSPs)
chr6 (18-273)||(11083862-11084118)
chr6 (18-298)||(34993913-34994202)
chr6 (43-273)||(26301626-26301865)
chr6 (100-298)||(4104183-4104386)
chr6 (18-151)||(19631831-19631967)
chr6 (47-185)||(30341136-30341277)
chr6 (114-217)||(6613756-6613860)
chr6 (177-268)||(30341461-30341555)
chr6 (160-213)||(3148918-3148971)
[»] chr8 (10 HSPs)
chr8 (19-298)||(3038489-3038775)
chr8 (31-295)||(4108596-4108867)
chr8 (23-298)||(18756345-18756628)
chr8 (18-273)||(7290801-7291063)
chr8 (79-291)||(23176472-23176690)
chr8 (47-203)||(6267282-6267441)
chr8 (115-273)||(28220737-28220898)
chr8 (116-217)||(30651006-30651108)
chr8 (116-208)||(34685958-34686051)
chr8 (20-118)||(35735844-35735944)
[»] chr5 (20 HSPs)
chr5 (18-298)||(22616575-22616860)
chr5 (43-273)||(33163623-33163857)
chr5 (43-273)||(36055579-36055814)
chr5 (18-216)||(31878465-31878668)
chr5 (26-267)||(41417289-41417537)
chr5 (18-253)||(27579110-27579350)
chr5 (69-298)||(21320885-21321120)
chr5 (22-208)||(10237500-10237689)
chr5 (156-295)||(12080415-12080558)
chr5 (154-273)||(13381123-13381245)
chr5 (116-219)||(29766563-29766667)
chr5 (19-119)||(33752910-33753013)
chr5 (43-119)||(33848549-33848627)
chr5 (43-116)||(10053331-10053406)
chr5 (43-119)||(21266127-21266205)
chr5 (154-294)||(33848029-33848173)
chr5 (154-238)||(12164049-12164136)
chr5 (22-90)||(25653670-25653739)
chr5 (172-213)||(25654589-25654630)
chr5 (154-207)||(33752481-33752534)
[»] chr2 (22 HSPs)
chr2 (18-267)||(41643954-41644211)
chr2 (18-273)||(18059066-18059328)
chr2 (22-242)||(15650934-15651161)
chr2 (18-273)||(6177857-6178118)
chr2 (52-298)||(39788289-39788541)
chr2 (18-273)||(18779111-18779367)
chr2 (18-207)||(27138794-27138987)
chr2 (82-300)||(18947286-18947511)
chr2 (18-288)||(41713246-41713522)
chr2 (18-289)||(42005471-42005737)
chr2 (18-298)||(19073440-19073722)
chr2 (18-175)||(34441729-34441887)
chr2 (116-214)||(17244836-17244935)
chr2 (142-273)||(34441584-34441718)
chr2 (119-208)||(19093640-19093730)
chr2 (18-119)||(30844929-30845033)
chr2 (69-217)||(38249901-38250048)
chr2 (116-273)||(18514436-18514597)
chr2 (154-199)||(32652621-32652666)
chr2 (154-186)||(7565511-7565543)
chr2 (154-186)||(40912484-40912516)
chr2 (23-119)||(43446320-43446419)
[»] chr7 (12 HSPs)
chr7 (18-217)||(22955075-22955278)
chr7 (18-217)||(4618518-4618721)
chr7 (64-295)||(49002353-49002591)
chr7 (18-216)||(37854059-37854260)
chr7 (18-298)||(23402050-23402337)
chr7 (18-258)||(5781600-5781844)
chr7 (19-273)||(7743002-7743274)
chr7 (63-208)||(40382016-40382165)
chr7 (80-295)||(4902465-4902687)
chr7 (23-237)||(8133299-8133520)
chr7 (136-214)||(10675025-10675104)
chr7 (43-119)||(19786392-19786470)
[»] chr1 (13 HSPs)
chr1 (19-301)||(15964183-15964472)
chr1 (18-217)||(27118412-27118615)
chr1 (46-239)||(13876657-13876856)
chr1 (18-273)||(10758004-10758266)
chr1 (134-298)||(16135524-16135693)
chr1 (18-295)||(16127602-16127883)
chr1 (31-304)||(31804767-31805037)
chr1 (21-295)||(25943283-25943563)
chr1 (43-139)||(16132583-16132681)
chr1 (116-216)||(3120626-3120727)
chr1 (116-208)||(47554938-47555031)
chr1 (174-273)||(5500596-5500697)
chr1 (114-166)||(43579462-43579515)
[»] chr4 (12 HSPs)
chr4 (18-298)||(2570560-2570848)
chr4 (62-256)||(2708000-2708199)
chr4 (46-273)||(2266561-2266793)
chr4 (18-295)||(9743670-9743954)
chr4 (46-301)||(17612445-17612707)
chr4 (18-238)||(1012378-1012596)
chr4 (43-151)||(54995629-54995739)
chr4 (116-261)||(49878858-49879006)
chr4 (43-119)||(33036064-33036142)
chr4 (154-208)||(28292432-28292486)
chr4 (18-119)||(17513008-17513112)
chr4 (72-116)||(33255577-33255621)
[»] scaffold0200 (1 HSPs)
scaffold0200 (18-273)||(24522-24783)
[»] scaffold0050 (1 HSPs)
scaffold0050 (18-273)||(5672-5932)
[»] scaffold0262 (2 HSPs)
scaffold0262 (158-208)||(11445-11495)
scaffold0262 (43-116)||(12031-12106)
[»] scaffold0001 (1 HSPs)
scaffold0001 (154-214)||(65992-66052)


Alignment Details
Target: chr3 (Bit Score: 383; Significance: 0; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 24 - 491
Target Start/End: Original strand, 51878203 - 51878671
Alignment:
Q  24 acgtcaaattatatggttgttgcacatttgtccataatgtgtgttattatatcgttacttattgcaattgtgtctc--attaaataaaaattaaacatag 121  Q
    |||||||||||||||||| ||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||  ||||||||||||||||||||||    
T  51878203 acgtcaaattatatggttattgcatatttgtccataatgtgtgttattatattgttacttattgcaattgtgtctccgattaaataaaaattaaacatag 51878302  T
Q  122 attctcatttatacattaagattgaaattctcttaatattttgtatgagtactgatttgtaataagataaagtttaattttagagtgatccaccagtaca 221  Q
    |||||||||||| || ||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| |||||||||||    
T  51878303 attctcatttatgcactaagattgaaattctcttaatattttgtatgagtactgaattgtaataaggtaaagtttaattttagagtgacccaccagtaca 51878402  T
Q  222 ctagctgacatgacatcggcaatcatattattaactaaacaaaataatttttaaaaagaatcaattttctgactgcatcgcacgaggttatgcttgcaca 321  Q
     |||||||||||||||||||||||||| |||||||||||| |||||| ||||  ||| ||||||||||||||||||||||||||||||||||||||||||    
T  51878403 gtagctgacatgacatcggcaatcatactattaactaaactaaataactttttgaaaaaatcaattttctgactgcatcgcacgaggttatgcttgcaca 51878502  T
Q  322 agaatgatgcgaacctcaagacatctcaagaaaacggatttgaataaatttgagaaaatatagattttaatatttcttcgtttgtaatttatttataaac 421  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  51878503 agaatgatgcgaacctcaagacatctcaagaaaacggatttgaataaatttgagaaaatatagattttaatatttcttcgtttgtaatttatttat-aac 51878601  T
Q  422 aagtgaaacacttgtaactgtgcgagttcttttacagtttatatatcttgcgcttctttttcatttcagt 491  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||    
T  51878602 aagtgaaacacttgtaactgtgcgagatcttttacagtttatatatcttgcgcttctttttcttttcagt 51878671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 19 - 301
Target Start/End: Complemental strand, 32180712 - 32180426
Alignment:
Q  19 atgtcacgtcaaattatatggttgttgcacatttgtccataatgtgtgttattatatcgttacttattgcaattgtgtctc--attaaataaaaattaaa 116  Q
    ||||||||||| |||||| |||  |||||||||||||  ||| |||||| |||||||| |||||||||||||||||||| |  ||||||| |||||||||    
T  32180712 atgtcacgtcagattatacggta-ttgcacatttgtc--taaggtgtgtcattatatctttacttattgcaattgtgtccctgattaaatcaaaattaaa 32180616  T
Q  117 catagattctcatttatacattaagattgaaattctc-ttaatattttgtatgagtactgatttgtaataagataaagtttaattttagagtgatccac- 214  Q
    ||||||||  ||||| | || |||||||||||||| | ||||||||||||||||| |||||||||||||||| ||||||||| |||||||||| |||||     
T  32180615 catagatttccatttgtgcactaagattgaaattccccttaatattttgtatgaggactgatttgtaataaggtaaagtttagttttagagtggtccacc 32180516  T
Q  215 --cagtacactagctgacatgacatcggcaatcatattattaactaaacaaaataatttttaaaaagaa-tcaattttctgactgcatcg 301  Q
      ||| |||||||| ||||||||||| ||| | ||| ||||  ||||||||||||| ||||  |||||| |||||||||||||| |||||    
T  32180515 agcaggacactagccgacatgacatcagcagttatactattggctaaacaaaataacttttccaaagaagtcaattttctgactacatcg 32180426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 21 - 273
Target Start/End: Complemental strand, 19606877 - 19606618
Alignment:
Q  21 gtcacgtcaaattatatggt-tgttgcacatttgtccataatgtgtgttattatatcgttacttattgcaattgtgtctc--attaaataaaaattaaac 117  Q
    ||||||||| |||||||||| | ||| |||||| ||||||| |||||| |||||||| |||||| ||||||| ||||| |  ||||||| ||||||||||    
T  19606877 gtcacgtcagattatatggtgtattgaacatttttccataaggtgtgtcattatatctttacttgttgcaatcgtgtcccttattaaatcaaaattaaac 19606778  T
Q  118 atagattctcatttatacattaagattgaaattctc-ttaatattttgtatgagtactgatttgtaataagataaagtttaattttagagtgatccac-- 214  Q
    |||||||  ||||| | ||  ||||||||||||| | ||||||||||||||||| |||||||||||||||| ||||||||| |||||||||| |||||      
T  19606777 atagatttccatttgtgcaccaagattgaaattccccttaatattttgtatgaggactgatttgtaataaggtaaagtttagttttagagtggtccacga 19606678  T
Q  215 -cagtacactagctgacatgacatcggcaatcatattattaactaaacaaaataattttt 273  Q
     ||| |||||||||||||||||||||||  | ||| |||| |||||||||||||| ||||    
T  19606677 gcaggacactagctgacatgacatcggcggtaatactattgactaaacaaaataactttt 19606618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 40 - 251
Target Start/End: Complemental strand, 45879430 - 45879216
Alignment:
Q  40 ttgttgcacatttgtccataatgtgtgttattatatcgttacttattgcaattgtgt--ctcattaaataaaaattaaacatagattctcatttatacat 137  Q
    |||||||||||||| |||||| ||||||  ||||||| |||||||||| |||||| |  || ||||||| |||||||||||||||||||||||| | ||     
T  45879430 ttgttgcacatttgcccataaggtgtgtcgttatatctttacttattgaaattgttttcctgattaaatcaaaattaaacatagattctcatttgtgcac 45879331  T
Q  138 taagattgaaattctc-ttaatattttgtatgagtactgatttgtaataagataaagtttaattttagagtgatccaccagtacactagctgacatgaca 236  Q
    ||| |||||||||| | || |||||||||||||| |||||||||||||||| |||||||||  |||| |||| |||||||| ||||||||||||||||||    
T  45879330 taacattgaaattcccctttatattttgtatgaggactgatttgtaataaggtaaagtttagctttaaagtggtccaccaggacactagctgacatgaca 45879231  T
Q  237 tcggcaatcatatta 251  Q
    || ||||| ||||||    
T  45879230 tcagcaattatatta 45879216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 18 - 296
Target Start/End: Complemental strand, 40640600 - 40640310
Alignment:
Q  18 catgtcacgtcaaattatatggt-tgttgcacatttgtccataatgtgtgttattatatcgttacttattgc---aattgtgtc--tcattaaataaaaa 111  Q
    |||||||||||| |||||||||| | ||||||||||| ||||||  ||||| |||||||  |||||||||||   |||||||||  | ||||||| ||||    
T  40640600 catgtcacgtcatattatatggtgtattgcacatttgcccataagatgtgtcattatatttttacttattgctgcaattgtgtccttgattaaatcaaaa 40640501  T
Q  112 ttaaacatagattctcatttatacattaagattgaaattctc-ttaatattttgtatgagtactgatttgtaataagataaagtttaattttagagtgat 210  Q
    ||||| ||| |||||||||| | || ||| |||||||||||| ||||||||||||||||| ||||||||||||||| |||||||||| ||||||||||||    
T  40640500 ttaaagatatattctcatttgtgcactaaaattgaaattctccttaatattttgtatgaggactgatttgtaataaaataaagtttagttttagagtgat 40640401  T
Q  211 ccaccagta---cactagctgacatgacatcggcaatcatattattaactaaacaaaataa--tttttaaaaagaatcaattttctgactg 296  Q
    | ||||| |   ||| || ||||||||||| |||| | ||| |||| ||||||||||||||  |||| ||||| | |||||||| ||||||    
T  40640400 ctaccagcagggcaccagttgacatgacataggcacttatactattgactaaacaaaataactttttcaaaaaaagtcaattttttgactg 40640310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 47 - 273
Target Start/End: Complemental strand, 7758359 - 7758139
Alignment:
Q  47 acatttgtccataatgtgtgttattatatcgttacttattgcaattgtgtctc--attaaataaaaattaaacatagattctcatttatacattaagatt 144  Q
    ||||||| |||||| ||| || |||||||| |||||||||||||||||||| |  ||||||| |||||||||||||||||||||||| | || |||||||    
T  7758359 acatttgcccataaggtgcgtcattatatctttacttattgcaattgtgtccctaattaaatcaaaattaaacatagattctcatttgtgcactaagatt 7758260  T
Q  145 gaaattctcttaatattttgtatgagtactgatttgtaataagataaagtttaattttagagtgatccaccagtacactagctgacatgacatcggcaat 244  Q
    ||||||| | | |||||||||||||  |||||||||||| ||||||||| ||| |||||||||| ||        ||||||||||||||| |||||||||    
T  7758259 gaaattccccttatattttgtatgaagactgatttgtaaaaagataaagcttagttttagagtgctc--------cactagctgacatgatatcggcaat 7758168  T
Q  245 catattattaactaaacaaaataattttt 273  Q
     ||| |||| |||||||||||||| ||||    
T  7758167 tatactattgactaaacaaaataactttt 7758139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 78 - 273
Target Start/End: Complemental strand, 47930572 - 47930371
Alignment:
Q  78 ttacttattgcaattgtgtc--tcattaaataaaaattaaacatagattctcatttatacattaagattgaaatt-ctcttaatattttgtatgagtact 174  Q
    ||||||||||||||||||||  ||||||||| |||||||||||||||||||||||| | || ||||||||||||| | ||||||||||||||| |  |||    
T  47930572 ttacttattgcaattgtgtccctcattaaatcaaaattaaacatagattctcatttgtgcactaagattgaaattccccttaatattttgtataatgact 47930473  T
Q  175 gatttgtaataagataaagtttaattttagagtgatccac---cagtacactagctgacatgacatcggcaatcatattattaactaaacaaaataattt 271  Q
    ||||||||||||  ||||| ||| |||||||||| |||||   ||| |||||| |||| |||||||||||| | ||| ||||| ||||||||||||||||    
T  47930472 gatttgtaataaagtaaagcttagttttagagtggtccactaacaggacactaactgatatgacatcggcagttatactattagctaaacaaaataattt 47930373  T
Q  272 tt 273  Q
    ||    
T  47930372 tt 47930371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 18 - 273
Target Start/End: Complemental strand, 7568685 - 7568430
Alignment:
Q  18 catgtcacgtcaaattatatggt-tgttgcacatttgtccataatgtgtgttattatatcgttacttattgcaattgtgtctc--attaaataaaaatta 114  Q
    |||||||||||| ||||||||   | |||||||||||  ||||| |||||| |||||||| ||||||||| ||||||||||||  ||||||| |||||||    
T  7568685 catgtcacgtcagattatatgcagtattgcacatttgcacataaagtgtgtcattatatctttacttattacaattgtgtctctgattaaatcaaaatta 7568586  T
Q  115 aacatagattctcatttatacattaagattgaaatt-ctcttaatattttgtatgagtactgatttgtaataagataaagtttaattttagagtgatcca 213  Q
    ||||||||||||||||| | || ||||||||||||| | |||||||||||||||||| |||||||||||       |||||||| |||||||||| ||||    
T  7568585 aacatagattctcatttgtgcactaagattgaaattccccttaatattttgtatgaggactgatttgta-------aaagtttagttttagagtggtcca 7568493  T
Q  214 c---cagtacactagctgacatgacatcggcaatcatattattaactaaacaaaataattttt 273  Q
    |   ||| |||||||||||||| | |||| || | ||| |||| |||||||||||||| ||||    
T  7568492 ccagcagaacactagctgacataaaatcgacagttatactattgactaaacaaaataactttt 7568430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 78 - 300
Target Start/End: Original strand, 26000675 - 26000904
Alignment:
Q  78 ttacttattgcaattgtgtc--tcattaaataaaaattaaacatagattctcatttatacattaagattgaaatt-ctcttaatattttgtatgagtact 174  Q
    ||||||||||||||||||||  | ||||||| |||||||||||||||||||||||| | || ||| ||||||||| | ||||||||||||||||||||||    
T  26000675 ttacttattgcaattgtgtcattgattaaatcaaaattaaacatagattctcatttgtgcactaaaattgaaatttcccttaatattttgtatgagtact 26000774  T
Q  175 gatttgtaataagataaagtttaattttagagtgatccaccagt---acactagctgacatgacatcggcaatcatattattaactaaacaaaataattt 271  Q
    ||||||||||||  ||||||||| |||||||||| || | ||||   | | |||||||||||| |||| || | ||| |||| | | |||||||||| ||    
T  26000775 gatttgtaataaagtaaagtttagttttagagtggtctatcagtaggatagtagctgacatgatatcgacagttatactattgattcaacaaaataactt 26000874  T
Q  272 tta-aaaagaatcaattttctgactgcatc 300  Q
    ||| |||| | |||| ||||||||||||||    
T  26000875 ttacaaaaaattcaaatttctgactgcatc 26000904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 43 - 273
Target Start/End: Complemental strand, 38392568 - 38392332
Alignment:
Q  43 ttgcacatttgtccataatgtgtgttattatatcgttacttattgcaattgtgt--ctcattaaataaaaattaaacatagattctcatttatacattaa 140  Q
    ||||||||||| ||||||||||||| |||||||  |||||||||||||||||||  || ||||||| ||||||||||||||||| |||||||| || |||    
T  38392568 ttgcacatttgcccataatgtgtgtcattatatatttacttattgcaattgtgtccctgattaaatcaaaattaaacatagattttcatttatgcactaa 38392469  T
Q  141 gattgaaa-ttctcttaatattttgtatgagtactgatttgtaataagataaagtttaattttaga---gtgatccaccagtacactagctgacatgaca 236  Q
    |||||||| ||| |||||||||||||| ||  |||||||||||||||  |||| |||| |||||||   ||   ||| ||  ||||||||||| |||| |    
T  38392468 gattgaaatttcccttaatattttgtaagatgactgatttgtaataatgtaaaatttagttttagaacggttcaccaacatgacactagctgatatgata 38392369  T
Q  237 tcggcaatcatattattaactaaacaaaataattttt 273  Q
    || ||| | ||||||||  ||||||||||||| ||||    
T  38392368 tcagcagttatattattggctaaacaaaataactttt 38392332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 18 - 298
Target Start/End: Complemental strand, 49359594 - 49359306
Alignment:
Q  18 catgtcacgtcaaattatatggt-tgttgcacatttgtccataatgtgtgttattatatcgttacttattgcaattgtgtctc--attaaataaaaatta 114  Q
    |||| ||||||| |||||||| | | |||||||||||  ||||| |||||| |||||||| ||||||| |||||||||||| |  ||||||| |||||||    
T  49359594 catgacacgtcatattatatgatgtattgcacatttgctcataaggtgtgtcattatatctttacttaatgcaattgtgtccctgattaaatcaaaatta 49359495  T
Q  115 aacatagattctcatttatacattaagattgaaattctctt-aatattttgtatgagtactgatttgtaataagataaagtttaattttagagtgat--- 210  Q
    ||||||||||   |||| | || |||||||||||||| ||| ||||||||||||||| |||||||| ||||||| |||||||| | |||||| || |       
T  49359494 aacatagatttctatttgtgcactaagattgaaattccctttaatattttgtatgaggactgatttataataaggtaaagttt-agtttagattggtcta 49359396  T
Q  211 ccaccagtacactagctgacatgacatcggcaatcatattattaactaaacaaaataa--tttttaaaaagaatcaattttctgactgca 298  Q
    |||| || ||||||||||||||||||||||   | ||| || |  |||||||||||||  ||||| |||| | |||||||||| ||||||    
T  49359395 ccactaggacactagctgacatgacatcggttgttatactaatggctaaacaaaataacttttttcaaaaaagtcaattttctaactgca 49359306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 18 - 205
Target Start/End: Original strand, 44880873 - 44881063
Alignment:
Q  18 catgtcacgtcaaattatatggt-tgttgcacatttgtccataatgtgtgttattatatcgttacttattgcaattgtgtctc--attaaataaaaatta 114  Q
    |||||||||||| || ||||||| | |||||||||||  ||||| | |||| |||||||| ||||||||| |||||||||| |  ||||||| |||||||    
T  44880873 catgtcacgtcagataatatggtgtattgcacatttgctcataagg-gtgtcattatatctttacttattacaattgtgtccctgattaaatcaaaatta 44880971  T
Q  115 aacatagattctcatttatacattaagattgaaattctc-ttaatattttgtatgagtactgatttgtaataagataaagtttaattttaga 205  Q
    ||||||||||| ||||| | || || ||||||||||| | |||||||||| |||||| | |||||||||||||| ||||||||| |||||||    
T  44880972 aacatagattcacatttgtgcactaggattgaaattccccttaatattttatatgaggattgatttgtaataaggtaaagtttagttttaga 44881063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 154 - 304
Target Start/End: Original strand, 47871210 - 47871365
Alignment:
Q  154 ttaatattttgtatgagtactgatttgtaataagataaagtttaattttagagtgatc---caccagtacactagctgacatgacatcggcaatcatatt 250  Q
    |||||||||| |||||| |||||||||||| |   ||||||||||| |||||||||||   || ||| ||||||| ||||||||||||  || | |||||    
T  47871210 ttaatattttatatgaggactgatttgtaacattgtaaagtttaatcttagagtgatccggcagcaggacactagttgacatgacatcaacagttatatt 47871309  T
Q  251 attaactaaacaaaataa--tttttaaaaagaatcaattttctgactgcatcgcac 304  Q
    |||  ||||| |||||||  ||| |||||| |||||||||||| ||||||| ||||    
T  47871310 attggctaaataaaataacgtttctaaaaaaaatcaattttctaactgcattgcac 47871365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 18 - 119
Target Start/End: Original strand, 4556627 - 4556731
Alignment:
Q  18 catgtcacgtcaaattatatggt-tgttgcacatttgtccataatgtgtgttattatatcgttacttattgcaatt--gtgtctcattaaataaaaatta 114  Q
    |||||||||||| |||||||||  | |||||||||||  |||||||||||| |||||||| ||||||||| |||||   | ||||||||||| |||||||    
T  4556627 catgtcacgtcagattatatggcgtattgcacatttgctcataatgtgtgtcattatatctttacttattacaattaaatatctcattaaattaaaatta 4556726  T
Q  115 aacat 119  Q
    |||||    
T  4556727 aacat 4556731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 53811942 - 53811865
Alignment:
Q  18 catgtcacgtcaaattatatggt-tgttgcacatttgtccataatgtgtgttattatatcgttacttattgcaattgt 94  Q
    |||||||||||| |||||||||| | || ||||||||| ||||| |||||| |||||||| ||||||| |||||||||    
T  53811942 catgtcacgtcagattatatggtgtattccacatttgtacataaggtgtgtcattatatctttacttaatgcaattgt 53811865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 154 - 213
Target Start/End: Original strand, 11019700 - 11019759
Alignment:
Q  154 ttaatattttgtatgagtactgatttgtaataagataaagtttaattttagagtgatcca 213  Q
    |||||||||| || ||| ||||||||||||||||||||| |||| | |||||||| ||||    
T  11019700 ttaatattttatacgaggactgatttgtaataagataaaatttagtcttagagtggtcca 11019759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 157 - 219
Target Start/End: Complemental strand, 40744262 - 40744200
Alignment:
Q  157 atattttgtatgagtactgatttgtaataagataaagtttaattttagagtgatccaccagta 219  Q
    |||||||||||||| | |||||||||||||| ||| ||||| | |||||||| || |||||||    
T  40744262 atattttgtatgaggattgatttgtaataaggtaatgtttagtcttagagtggtctaccagta 40744200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 203
Target Start/End: Original strand, 36689674 - 36689723
Alignment:
Q  154 ttaatattttgtatgagtactgatttgtaataagataaagtttaatttta 203  Q
    ||||||||||||||||| ||| |||||||||||  ||||||||| |||||    
T  36689674 ttaatattttgtatgaggacttatttgtaataaagtaaagtttagtttta 36689723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 154 - 190
Target Start/End: Original strand, 5125442 - 5125478
Alignment:
Q  154 ttaatattttgtatgagtactgatttgtaataagata 190  Q
    ||||||||||||| ||| |||||||||||||||||||    
T  5125442 ttaatattttgtaagaggactgatttgtaataagata 5125478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 117; Significance: 2e-59; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 18 - 273
Target Start/End: Complemental strand, 11084118 - 11083862
Alignment:
Q  18 catgtcacgtcaaattatatggt-tgttgcacatttgtccataatgtgtgttattatatcgttacttattgcaattgtgtctc--attaaataaaaatta 114  Q
    ||||||||||||  ||||||||| | || |||||||| |||||| |||||| |||||||| ||||||||||||||||||||||  ||||||| |||||||    
T  11084118 catgtcacgtca--ttatatggtgtattacacatttgcccataaggtgtgtcattatatctttacttattgcaattgtgtctctgattaaatcaaaatta 11084021  T
Q  115 aacatagattctcatttatacattaagattgaaattctcttaatattttgtatgagtactgatttgtaataagataaagtttaattttagagtgatccac 214  Q
    ||||||||||||||||| | ||||||||||||||||| | | ||||||||||| || |||||||||||||||||||||| ||| |||||||||| || |     
T  11084020 aacatagattctcatttgttcattaagattgaaattccccttatattttgtataaggactgatttgtaataagataaagcttagttttagagtggtctat 11083921  T
Q  215 cagtacactagctgacatgacatcggcaatcatattattaactaaacaaaataattttt 273  Q
    ||  |||||||||||||||| || | |||| ||| ||||||||||| ||||||| ||||    
T  11083920 cacgacactagctgacatgatattgacaattatactattaactaaataaaataactttt 11083862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 18 - 298
Target Start/End: Original strand, 34993913 - 34994202
Alignment:
Q  18 catgtcacgtcaaattatatggt-tgttgcacatttgtccataatgtgtgttattatatcgttacttattgcaattgtgtc--tcattaaataaaaatta 114  Q
    |||||||| ||| |||||||||| | ||||||||||||||||||||| |||||||||||| ||||||||| ||||||||||  | ||||||| |||||||    
T  34993913 catgtcacatcagattatatggtgtattgcacatttgtccataatgtatgttattatatctttacttattacaattgtgtccttgattaaatcaaaatta 34994012  T
Q  115 aacatagattctcatttatacattaagattgaaatt-ctcttaatattttgtatgagtactgatttgtaataagataaagtttaattttagagtgatcca 213  Q
    ||||||||||||||||||| || ||||||||||||| | ||||||||||| ||| || ||||||||||||||||||| | |||| ||||||| |  ||||    
T  34994013 aacatagattctcatttatgcactaagattgaaattccccttaatattttatataagaactgatttgtaataagatacaatttagttttagaatagtcca 34994112  T
Q  214 ccag---tacactagctgacatgacatcggcaatcatattattaactaaacaaaataa--tttttaaaaagaatcaattttctgactgca 298  Q
    ||||    |||||||| |||||||||||  || | ||  ||||  |||||||||||||  ||||| |||| |||||||||||| ||||||    
T  34994113 ccagcatgacactagccgacatgacatcaacacttattatattggctaaacaaaataattttttttaaaaaaatcaattttctaactgca 34994202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 43 - 273
Target Start/End: Complemental strand, 26301865 - 26301626
Alignment:
Q  43 ttgcacatttgtccataatgtgtgttattatatcgttacttattgcaattgtgtctc--attaaataaaaattaaacatagattctcatttatacattaa 140  Q
    ||||| |||| |||||||  ||||| |||||||| |||||||||||||||||||| |  ||||||| |||||||||||||||||||||||| |  | |||    
T  26301865 ttgcatatttatccataagatgtgtcattatatctttacttattgcaattgtgtccctgattaaatcaaaattaaacatagattctcatttgtgtactaa 26301766  T
Q  141 gattgaaattctctt----aatattttgtatgagtactgatttgt-aataagataaagtttaattttagagtgatccac---cagtacactagctgacat 232  Q
    ||||||||||| |||     |||||||||||||| |||||||||| |||||||||||  ||||||||||||||  ||||   ||  |||||||| |||||    
T  26301765 gattgaaattccctttatatatattttgtatgagaactgatttgtaaataagataaaacttaattttagagtggcccaccaacatgacactagccgacat 26301666  T
Q  233 gacatcggcaatcatattattaactaaacaaaataattttt 273  Q
    || ||||||||| |||  ||| |||||| ||||||||||||    
T  26301665 gatatcggcaattata-cattgactaaataaaataattttt 26301626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 100 - 298
Target Start/End: Original strand, 4104183 - 4104386
Alignment:
Q  100 attaaataaaaattaaacatagattctcatttatacattaagattgaaattctc-ttaatattttgtatgagtactgatttgtaataagataaagtttaa 198  Q
    ||||||| ||||||||||||| |||| ||||| | || |||||||||||||||| ||||||||||||||||  | ||||||||||||||  ||||||||     
T  4104183 attaaatcaaaattaaacataaattcccatttgtgcactaagattgaaattctccttaatattttgtatgaagattgatttgtaataaggcaaagtttag 4104282  T
Q  199 ttttagagtgatccaccag---tacactagctgacatgacatcggcaatcatattattaactaaacaaaataa-tttttaaaaagaatcaattttctgac 294  Q
    |||||||||| ||||||||    |||||| |||||||||||||| |||| ||| |||| || | ||||||||| ||||| |||| | ||| |||||||||    
T  4104283 ttttagagtggtccaccagcacgacactaactgacatgacatcgacaattatactattgacaagacaaaataactttttcaaaaaagtcagttttctgac 4104382  T
Q  295 tgca 298  Q
    ||||    
T  4104383 tgca 4104386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 18 - 151
Target Start/End: Original strand, 19631831 - 19631967
Alignment:
Q  18 catgtcacgtcaaattatatggt-tgttgcacatttgtccataatgtgtgttattatatcgttacttattgcaattgtgtctc--attaaataaaaatta 114  Q
    |||||||||| | |||||||||| | ||||||||||| | |||| |||| | |||||||| |||||||||||||| |||||||  ||||||| |||||||    
T  19631831 catgtcacgttagattatatggtgtattgcacatttgcctataaggtgtttcattatatctttacttattgcaatcgtgtctctgattaaatcaaaatta 19631930  T
Q  115 aacatagattctcatttatacattaagattgaaattc 151  Q
    || ||| |||||||||| | || ||||||||||||||    
T  19631931 aaaataaattctcatttgtgcactaagattgaaattc 19631967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 47 - 185
Target Start/End: Original strand, 30341136 - 30341277
Alignment:
Q  47 acatttgtccataatgtgtgttattatatcgttacttattgcaattgtgt--ctcattaaataaaaattaaacatagattctcatttatacattaagatt 144  Q
    ||||||| ||||||  ||||| |||||||| | |||||||||||||||||   | ||||||| ||||||||| |||||||| ||||  | || |||||||    
T  30341136 acatttgcccataagttgtgtcattatatcttcacttattgcaattgtgttcatgattaaatcaaaattaaatatagattcccattagtgcactaagatt 30341235  T
Q  145 gaaatt-ctcttaatattttgtatgagtactgatttgtaata 185  Q
    |||||| | |||||||||||||||||| ||| ||||||||||    
T  30341236 gaaattccccttaatattttgtatgaggactaatttgtaata 30341277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 114 - 217
Target Start/End: Complemental strand, 6613860 - 6613756
Alignment:
Q  114 aaacatagattctcatttatacattaagattgaaattctc-ttaatattttgtatgagtactgatttgtaataagataaagtttaattttagagtgatcc 212  Q
    ||||||||||||| |||| | || |||||||||||||||| ||||||||||||||||| | | |||||||||||| | ||||||| | |||||||| |||    
T  6613860 aaacatagattcttatttgtgcactaagattgaaattctccttaatattttgtatgaggattcatttgtaataaggtgaagtttagtcttagagtggtcc 6613761  T
Q  213 accag 217  Q
    |||||    
T  6613760 accag 6613756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 177 - 268
Target Start/End: Original strand, 30341461 - 30341555
Alignment:
Q  177 tttgtaataagataaagtttaattttagagtgat---ccaccagtacactagctgacatgacatcggcaatcatattattaactaaacaaaataa 268  Q
    ||||||||||| ||||||| | ||||||||||||   ||| ||| ||||||||| |||||||||| ||||| ||| || |  |||||||||||||    
T  30341461 tttgtaataaggtaaagttcagttttagagtgattcaccatcaggacactagctaacatgacatcagcaattatactactggctaaacaaaataa 30341555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 160 - 213
Target Start/End: Complemental strand, 3148971 - 3148918
Alignment:
Q  160 ttttgtatgagtactgatttgtaataagataaagtttaattttagagtgatcca 213  Q
    |||| |||||| ||||||||||||||||  ||||||||| ||||||||| ||||    
T  3148971 ttttctatgagaactgatttgtaataaggaaaagtttaaatttagagtggtcca 3148918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 114; Significance: 1e-57; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 19 - 298
Target Start/End: Original strand, 3038489 - 3038775
Alignment:
Q  19 atgtcacgtcaaattatatggt-tgttgcacatttgtccataatgtgtgttattatatcgttacttattgcaattgtgtctc--attaaataaaaattaa 115  Q
    ||||||||||| ||||||  || | |||||||| ||||||||| |||||| |||||||| |||||||||||||||||||| |  ||||||| ||||||||    
T  3038489 atgtcacgtcagattatacagtgtattgcacatctgtccataaggtgtgtcattatatctttacttattgcaattgtgtccctgattaaatcaaaattaa 3038588  T
Q  116 acatagattctcatttatacattaagattgaaattctcttaatattttgtatgagtactgatttgtaataagataaagtttaattttagagtgatccacc 215  Q
    || ||||||| ||||||| || |||||||||||||| |||||||||||||||||  | |||||||||||||| ||||||||| |||||||||| ||||||    
T  3038589 acttagattcccatttatgcactaagattgaaattcccttaatattttgtatgatgattgatttgtaataaggtaaagtttagttttagagtggtccacc 3038688  T
Q  216 ag---tacactagctgacatgacatcggcaatcatattattaactaaacaaaataa-tttttaaaaagaatcaattttctgactgca 298  Q
    ||    ||||| | |||||||||||| |||||  || ||||  ||||||||||||| ||||| |||| | |||||||||||||||||    
T  3038689 agcaagacacttgttgacatgacatcagcaattctactattggctaaacaaaataatttttttaaaaaagtcaattttctgactgca 3038775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 31 - 295
Target Start/End: Complemental strand, 4108867 - 4108596
Alignment:
Q  31 attatatggt-tgttgcacatttgtccataatgtgtgttattatatcgttacttattgcaattgtgtctc--attaaataaaaattaaacatagattctc 127  Q
    |||||||||| | ||||||||||| |||||| ||||||  ||||||| |||||||||||||||||||| |  ||||||| ||||||||||||||||||||    
T  4108867 attatatggtgtattgcacatttgcccataaggtgtgtcgttatatctttacttattgcaattgtgtccctgattaaatcaaaattaaacatagattctc 4108768  T
Q  128 atttatacattaagattgaaattctcttaatattttgtatgagtactgatttgtaataagataaagtttaattttagagtgatccaccagta---cacta 224  Q
    |||| | || ||| |||||||||| | | |||||||||||||  |||| ||||||||||||||||| ||| ||||| |||| |||||||  |   |||||    
T  4108767 atttgtgcactaaaattgaaattccccttatattttgtatgaagactgttttgtaataagataaagcttagttttaaagtggtccaccaacatgacacta 4108668  T
Q  225 gctgacatgacatcggcaatcatattattaactaaacaaaataa-tttttaaaaagaatcaattttctgact 295  Q
    |||||||||| | ||||||| |||||||| |||||||||||||| ||||| |||| | |||||||| |||||    
T  4108667 gctgacatgataacggcaattatattattgactaaacaaaataactttttcaaaaaagtcaattttttgact 4108596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 23 - 298
Target Start/End: Complemental strand, 18756628 - 18756345
Alignment:
Q  23 cacgtcaaattatatggt-tgttgcacatttgtccataatgtgtgttattatatcgttacttattgcaattgtgtc--tcattaaataaaaattaaacat 119  Q
    |||||||||||||||||| | ||||||||||||| ||||  ||||| |||||||| ||||||||||||||||||||  | ||| ||| |||| ||| |||    
T  18756628 cacgtcaaattatatggtctattgcacatttgtctataagatgtgtcattatatctttacttattgcaattgtgtccatgattcaattaaaagtaagcat 18756529  T
Q  120 agattctcatttatacattaagattgaaattctc-ttaatattttgtatgagtactgatttgtaataagataaagtttaattttagagtgatccaccagt 218  Q
    | |||| | ||| | || |||||||  ||||| | ||||||||||||||||| || ||||||||||||| ||||| ||| |||||||||| |||||||||    
T  18756528 atattcccctttgtgcactaagattttaattccccttaatattttgtatgaggacagatttgtaataaggtaaagattagttttagagtggtccaccagt 18756429  T
Q  219 ---acactagctgacatgacatcggcaatcatattattaactaaacaaaataa-tttttaaaaagaatcaattttctgactgca 298  Q
       ||| ||||| |||| ||||||||||| ||||||||  ||||||||||||| |||||  ||| |||||||||||||||||||    
T  18756428 aggacattagctaacataacatcggcaattatattattggctaaacaaaataactttttccaaaaaatcaattttctgactgca 18756345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 18 - 273
Target Start/End: Original strand, 7290801 - 7291063
Alignment:
Q  18 catgtcacgtcaaattatatggt-tgttgcacatttgtccataatgtgtgttattatatcgttacttattgcaattgtgt--ctcattaaataaaaatta 114  Q
    |||||||||||| |||||||||  | ||  ||||||  ||||||  ||| |||||||||| ||||||||||||||||| |  || ||||||| |||||||    
T  7290801 catgtcacgtcagattatatggcgtattagacattttcccataagatgtattattatatctttacttattgcaattgtattcctgattaaatcaaaatta 7290900  T
Q  115 aacatagattctcatttatacattaagattgaaattc-tcttaatattttgtatgagtactgatttgtaataagataaagtttaattttagagtgatcca 213  Q
     ||||||||| |||||| | || |||||||||||||| ||||||||||||||||||| | |||||||||||||||||||||||| |||||||||| | ||    
T  7290901 gacatagattttcatttgtgcactaagattgaaattcctcttaatattttgtatgaggattgatttgtaataagataaagtttagttttagagtggttca 7291000  T
Q  214 c---cagtacactagctgacatgacatcggcaatcatattattaactaaacaaaataattttt 273  Q
    |   ||| ||||||| ||| ||||||||| || | ||| ||||  ||||||||||||||||||    
T  7291001 caaacaggacactagttgatatgacatcgacagttatactattgcctaaacaaaataattttt 7291063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 79 - 291
Target Start/End: Complemental strand, 23176690 - 23176472
Alignment:
Q  79 tacttattgcaattgtgtctc--attaaataaaaattaaacatagattctcatttatacattaagattgaaattctcttaatattttgtatgagtactga 176  Q
    ||||||||||||||||||| |  ||||||| |||||||||||||||||||||||| | || |||||||||||||| | | |||||||||||||| ||| |    
T  23176690 tacttattgcaattgtgtccctgattaaatcaaaattaaacatagattctcatttgtgcactaagattgaaattccccttatattttgtatgaggactaa 23176591  T
Q  177 tttgtaataagataaagtttaattttagagtgatc---caccagtacactagctgacatgacatcggcaatcatattattaactaaacaaaataa-tttt 272  Q
    ||||||||||||||||| ||| |||||||||| ||   || ||  |||||||||||||||| ||||| ||| ||| |||| | |||||||||||| ||||    
T  23176590 tttgtaataagataaagcttagttttagagtggtccatcaacatgacactagctgacatgatatcggaaattatactattgaataaacaaaataactttt 23176491  T
Q  273 taaaaagaatcaattttct 291  Q
    | |||| | ||||||||||    
T  23176490 tcaaaaaagtcaattttct 23176472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 47 - 203
Target Start/End: Complemental strand, 6267441 - 6267282
Alignment:
Q  47 acatttgtccataatgtgtgttattatatcgttacttattgcaattgtgtc--tcattaaataaaaattaaacatagattctcatttatacattaagatt 144  Q
    |||||| || |||| ||||||||||||||| ||||||||||||||| ||||  | ||||||| |||||||||||||||||  ||||| | || |||||||    
T  6267441 acatttatctataaggtgtgttattatatctttacttattgcaattatgtccttgattaaatcaaaattaaacatagatttgcatttgtgcactaagatt 6267342  T
Q  145 gaaattctc-ttaatattttgtatgagtactgatttgtaataagataaagtttaatttta 203  Q
    ||||||| | ||||||||||||||||  |||||||||||||||||||||||||| |||||    
T  6267341 gaaattccccttaatattttgtatgatgactgatttgtaataagataaagtttagtttta 6267282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 115 - 273
Target Start/End: Complemental strand, 28220898 - 28220737
Alignment:
Q  115 aacatagattctcatttatacattaagattgaaattctcttaatattttgtatgagtactgatttgtaataagataaagtttaattttagagtgatccac 214  Q
    ||||||||||||| ||| |||| |||||||||||||| | | |||||||||||||| |||||||||||||||||||||| ||| |||||||||| |||||    
T  28220898 aacatagattctcttttgtacactaagattgaaattccccttatattttgtatgaggactgatttgtaataagataaagcttagttttagagtggtccac 28220799  T
Q  215 ---cagtacactagctgacatgacatcggcaatcatattattaactaaacaaaataattttt 273  Q
       ||  ||| ||||  |||||| |||| |||| ||| |||| |||||||||||||| ||||    
T  28220798 caacatgacattagcaaacatgatatcgacaattatactattgactaaacaaaataactttt 28220737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 116 - 217
Target Start/End: Complemental strand, 30651108 - 30651006
Alignment:
Q  116 acatagattctcatttatacattaagattgaaattc-tcttaatattttgtatgagtactgatttgtaataagataaagtttaattttagagtgatccac 214  Q
    ||||||||| |||||| | || ||||||| |||||| ||||||||||| ||||||  |||||||||||||||| ||||||||||| |||||||| |||||    
T  30651108 acatagattttcatttgtgcactaagattaaaattcctcttaatatttagtatgatgactgatttgtaataaggtaaagtttaatcttagagtggtccac 30651009  T
Q  215 cag 217  Q
    |||    
T  30651008 cag 30651006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 116 - 208
Target Start/End: Original strand, 34685958 - 34686051
Alignment:
Q  116 acatagattctcatttatacattaagattgaaatt-ctcttaatattttgtatgagtactgatttgtaataagataaagtttaattttagagtg 208  Q
    ||||| |||||||||| | || ||||| ||||||| | |||||||||||||||||| |||||||||||||||  ||||||||| | ||||||||    
T  34685958 acatatattctcatttgtgcactaagactgaaatttcccttaatattttgtatgaggactgatttgtaataaagtaaagtttagtcttagagtg 34686051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 20 - 118
Target Start/End: Complemental strand, 35735944 - 35735844
Alignment:
Q  20 tgtcacgtcaaattatatggt-tgttgcacatttgtccataatgtgtgttattatatcgttacttattgcaattgtgtc-tcattaaataaaaattaaac 117  Q
    |||| ||| |||||||||||| | |||||||||||  ||||| |||||  | |||||| |||| |||| |||||||||| | ||||||||||||||||||    
T  35735944 tgtcccgttaaattatatggtgtattgcacatttgctcataaggtgtgccactatatctttacctattacaattgtgtcctgattaaataaaaattaaac 35735845  T
Q  118 a 118  Q
    |    
T  35735844 a 35735844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 110; Significance: 3e-55; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 18 - 298
Target Start/End: Original strand, 22616575 - 22616860
Alignment:
Q  18 catgtcacgtcaaattatatggt-tgttgcacatttgtccataatgtgtgttattatatcgttacttattgcaattgtgtctc--attaaataaaaatta 114  Q
    |||||||||||| |||||||||| | ||| ||||||| |||||| |||||| |||||||| |||||||||||||||||||| |  ||||||| |||||||    
T  22616575 catgtcacgtcatattatatggtgtattggacatttgcccataaggtgtgtcattatatctttacttattgcaattgtgtccctgattaaatcaaaatta 22616674  T
Q  115 aacatagattctcatttatacattaagattgaaattctc-ttaatattttgtatgagtactgatttgtaataagataaagtttaattttagagtgatcca 213  Q
    ||||||||||||||||| | || ||| |||||||||| | ||||||||||||||||| |||||||||||||||| ||||||||| |||||||||| ||||    
T  22616675 aacatagattctcatttgtgcactaaaattgaaattccccttaatattttgtatgaggactgatttgtaataaggtaaagtttagttttagagtggtcca 22616774  T
Q  214 c---cagtacactagctgacatgacatcggcaatcatattattaactaaacaaaataa-tttttaaaaagaatcaattttctgactgca 298  Q
    |   ||| ||||||||||||||||   | ||| | ||| ||||  ||||||||||||| ||||  |||| ||||| |||||||||||||    
T  22616775 ccagcaggacactagctgacatga---ctgcagttatactattggctaaacaaaataacttttccaaaaaaatcagttttctgactgca 22616860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 43 - 273
Target Start/End: Original strand, 33163623 - 33163857
Alignment:
Q  43 ttgcacatttgtccataatgtgtgttattatatcgttacttattgcaattgtgtctc--attaaataaaaattaaacatagattctcatttatacattaa 140  Q
    |||||||||| ||||||| |||||  |||||||| |||||||||||||||||||| |  ||||||| ||||||||||||| |||||||| | | ||||||    
T  33163623 ttgcacatttatccataaggtgtgccattatatctttacttattgcaattgtgtccctgattaaatcaaaattaaacataaattctcatgtgtgcattaa 33163722  T
Q  141 gattgaaattctc-ttaatattttgtatgagtactgatttgtaataagataaagtttaattttagagtgatccac--cagtacactagctgacatgacat 237  Q
    |||||||||| || ||||||||||||||||  |||||||||||||||| ||||||||| ||||| |||| |||||  ||  |||||||||||||||||||    
T  33163723 gattgaaattttccttaatattttgtatgaagactgatttgtaataaggtaaagtttagttttaaagtggtccacagcatgacactagctgacatgacat 33163822  T
Q  238 cggcaatcatattattaactaaacaaaataattttt 273  Q
    ||||| | ||| |||| ||||||| |||||||||||    
T  33163823 cggcagttatactattgactaaac-aaataattttt 33163857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 43 - 273
Target Start/End: Complemental strand, 36055814 - 36055579
Alignment:
Q  43 ttgcacatttgtccataatgtgtgttattatatcgttacttattgcaattgtgtctc--attaaataaaaattaaacatagattctcatttatacattaa 140  Q
    |||||||||||  ||||| |||||| |||||||| ||||||||| |||||||||| |  ||||||| |||||||||||||||||||||||| | || |||    
T  36055814 ttgcacatttgctcataaggtgtgtcattatatctttacttattacaattgtgtccccgattaaatcaaaattaaacatagattctcatttgtgcactaa 36055715  T
Q  141 gattgaaattctcttaatattttgtatgagtactgatttgtaataagataaagtttaattttagagtgatccaccag---tacactagctgacatgacat 237  Q
    ||||||||||| |||||||| ||||||||| | |||||||||||||| ||||||||| ||||||||||  |||||||    ||||||| |||| ||||||    
T  36055714 gattgaaattcccttaatatcttgtatgagaattgatttgtaataaggtaaagtttagttttagagtgggccaccagcacgacactagttgacttgacat 36055615  T
Q  238 cggcaatcatattattaactaaacaaaataattttt 273  Q
    || || | ||| ||||| ||||||||||||| ||||    
T  36055614 cgccagttatactattagctaaacaaaataactttt 36055579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 18 - 216
Target Start/End: Original strand, 31878465 - 31878668
Alignment:
Q  18 catgtcacgtcaaattatatggt-tgttgcacatttgtccataatgtgtgttattatatcgttacttattgcaattgtgtctc--attaaataaaaatta 114  Q
    |||||||||||| |||||||||| | ||||||||||||| |||| |||||| |||||||| ||||||||  |||||||||| |  ||||||| |||||||    
T  31878465 catgtcacgtcagattatatggtgtattgcacatttgtctataaggtgtgtcattatatctttacttatgacaattgtgtccctgattaaatcaaaatta 31878564  T
Q  115 aacatagattctcatttatacattaagattgaaattct-cttaatatttt-gtatgagtactgatttgtaataagataaagtttaattttagagtgatcc 212  Q
    |||||||||||  |||| | || ||||||||||||||| ||||||||||| ||||| | |||||| ||||||||| |||||||||||||||||||| |||    
T  31878565 aacatagattcctatttgtgcactaagattgaaattcttcttaatatttttgtatgggaactgatctgtaataaggtaaagtttaattttagagtggtcc 31878664  T
Q  213 acca 216  Q
    ||||    
T  31878665 acca 31878668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 26 - 267
Target Start/End: Complemental strand, 41417537 - 41417289
Alignment:
Q  26 gtcaaattatatggt-tgttgcacatttgtccataatgtgtgttattatatcgttacttattgcaattgtgtctca--ttaaataaaaattaaacataga 122  Q
    |||| |||||||||| | ||||| |||||  ||||| |||||| ||| |||| |||||||||||||||||||| ||  |||||| |||||||||||||||    
T  41417537 gtcagattatatggtgtattgcaaatttgctcataaggtgtgtcattttatctttacttattgcaattgtgtcccagattaaatcaaaattaaacataga 41417438  T
Q  123 ttctcatttatacattaagattgaaatt-ctcttaatattttgtatgagtactgatttgtaataagataaagtttaattttagagtgatccaccag---t 218  Q
    ||||||||| | || ||||||||||||| | |||| ||||||||||||  |||||||||||||||| |||| |||| ||||| | |||||||||||        
T  41417437 ttctcatttgtgcactaagattgaaattccccttattattttgtatgatgactgatttgtaataaggtaaaatttagttttaaaatgatccaccagcatg 41417338  T
Q  219 acactagctgacatgacatcggcaatcatattattaactaaacaaaata 267  Q
    |||| |||||||||||||||| || | ||| |||||  |||||||||||    
T  41417337 acaccagctgacatgacatcgacagttatactattagttaaacaaaata 41417289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 18 - 253
Target Start/End: Original strand, 27579110 - 27579350
Alignment:
Q  18 catgtcacgtcaaattatatggt-tgttgcacatttgtccataatgtgtgttattatatcgttacttattgcaattgtgtctc--attaaataaaaatta 114  Q
    |||||||||||| |||||||||| | ||||| ||||| | |||| ||| || |||||||| ||| ||||||||||||||||||  ||||||| |||| ||    
T  27579110 catgtcacgtcagattatatggtgtattgcatatttgcctataaagtgcgtcattatatctttatttattgcaattgtgtctctaattaaatcaaaagta 27579209  T
Q  115 aacatagattctcatttatacattaagattgaaattctc-ttaatattttgtatgagtactgatttgtaataagataaagtttaattttagagtgatcca 213  Q
    ||||||  ||  ||||| | || |||||||||||||||| |||||||||||| | || | |||||||||||||| ||||||||| |||||||||| ||||    
T  27579210 aacata--tttccatttgtgcactaagattgaaattctccttaatattttgtttaaggaatgatttgtaataaggtaaagtttagttttagagtggtcca 27579307  T
Q  214 ccagt---acactagctgacatgacatcggcaatcatattatt 253  Q
    |||||   ||||||||| ||||||||||| || | ||||||||    
T  27579308 ccagtagaacactagctaacatgacatcgacagttatattatt 27579350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 69 - 298
Target Start/End: Original strand, 21320885 - 21321120
Alignment:
Q  69 attatatcgttacttattgcaattgtgtctc--attaaataaaaattaaacatagattctcatttatacattaagattgaaatt-ctcttaatattttgt 165  Q
    |||||||| ||||||||| ||||||||||||  ||||||| ||||||||||||||||||||||||   || ||| ||||||||| | |||||||||||||    
T  21320885 attatatctttacttattacaattgtgtctctgattaaatcaaaattaaacatagattctcatttgagcactaaaattgaaatttcgcttaatattttgt 21320984  T
Q  166 atgagtactgatttgtaataagataaagtttaattttagagtgatccac---cagtacactagctgacatgacatcggcaatcatattattaactaaaca 262  Q
    ||||| | |||||||||  ||| ||||||||| ||||||| ||||||||   ||| |||||||||| ||||| |||| || | ||| ||||  |||||||    
T  21320985 atgaggattgatttgtaggaaggtaaagtttagttttaga-tgatccaccagcagaacactagctggcatgaaatcgtcagttatactattggctaaaca 21321083  T
Q  263 aaataa-tttttaaaaagaatcaattttctgactgca 298  Q
    |||||| ||||| |||| | ||| ||||||| |||||    
T  21321084 aaataactttttcaaaaaagtcagttttctggctgca 21321120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 22 - 208
Target Start/End: Original strand, 10237500 - 10237689
Alignment:
Q  22 tcacgtcaaattatatggt-tgttgcacatttgtccataatgtgtgttattatatcgttacttattgcaattgtgtctca--ttaaataaaaattaaaca 118  Q
    |||||||| |||||||||| | |||| ||||||||||||| || | | |||||||  ||||||||| |||||||||| ||  |||||| ||||| |||||    
T  10237500 tcacgtcagattatatggtgtattgcgcatttgtccataaggtatttcattatatatttacttattccaattgtgtcccagattaaatcaaaat-aaaca 10237598  T
Q  119 tagattctcatttatacattaagattgaaa-ttctcttaatattttgtatgagtactgatttgtaataagataaagtttaattttagagtg 208  Q
    ||||||||||||| |||| ||||||||||| ||| |||||||||||||| ||  ||| |||||||||||| ||||||||| || |||||||    
T  10237599 tagattctcatttgtacactaagattgaaatttcccttaatattttgtacgatgactaatttgtaataaggtaaagtttagttctagagtg 10237689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 156 - 295
Target Start/End: Complemental strand, 12080558 - 12080415
Alignment:
Q  156 aatattttgtatgagtactgatttgtaataagataaagtttaattttagagtgatccac---cagtacactagctgacatgacatcggcaatcatattat 252  Q
    ||||||||||||||| |||||||||||||||| ||||||||| | ||| |||| |||||   ||| ||||||||||||||||||||  |||| || ||||    
T  12080558 aatattttgtatgaggactgatttgtaataaggtaaagtttagtcttaaagtggtccaccagcaggacactagctgacatgacatcaacaattatgttat 12080459  T
Q  253 taactaaacaaaataa-tttttaaaaagaatcaattttctgact 295  Q
      |||||||||||||| ||||| |||| | ||||||| ||||||    
T  12080458 cgactaaacaaaataactttttcaaaaaagtcaatttcctgact 12080415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 154 - 273
Target Start/End: Original strand, 13381123 - 13381245
Alignment:
Q  154 ttaatattttgtatgagtactgatttgtaataagataaagtttaattttagagtgatccaccagta---cactagctgacatgacatcggcaatcatatt 250  Q
    ||||||||||||||||| | |||||| ||||||| |||||||||   |||||| | |||||||| |   |||||||||||||||||||  || | ||| |    
T  13381123 ttaatattttgtatgaggattgatttataataaggtaaagtttagccttagagaggtccaccagcagaacactagctgacatgacatcaacagttatact 13381222  T
Q  251 attaactaaacaaaataattttt 273  Q
    ||| |||||||||||||||||||    
T  13381223 attgactaaacaaaataattttt 13381245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 116 - 219
Target Start/End: Complemental strand, 29766667 - 29766563
Alignment:
Q  116 acatagattctcatttatacattaagattgaaattctc-ttaatattttgtatgagtactgatttgtaataagataaagtttaattttagagtgatccac 214  Q
    |||| ||||| ||||| | |||||||||| |||||| | ||||||||||||||||| ||| |||||||||||| ||||||||| | |||||||| ||||     
T  29766667 acatggattcccatttgtgcattaagatttaaattccccttaatattttgtatgagaactaatttgtaataaggtaaagtttagtcttagagtggtccat 29766568  T
Q  215 cagta 219  Q
    |||||    
T  29766567 cagta 29766563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 19 - 119
Target Start/End: Complemental strand, 33753013 - 33752910
Alignment:
Q  19 atgtcacgtcaaattatatggttg-ttgcacatttgtccataatgtgtgttattatatcgttacttattgcaattgtgt--ctcattaaataaaaattaa 115  Q
    ||||||| ||| |||||| ||||  ||||||||||||||| || |||||||||| |||| ||||||||||| |||||||  || ||||||||||| ||||    
T  33753013 atgtcacttcagattatagggtttattgcacatttgtccacaaggtgtgttattgtatctttacttattgccattgtgtccctgattaaataaaatttaa 33752914  T
Q  116 acat 119  Q
    ||||    
T  33752913 acat 33752910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 43 - 119
Target Start/End: Complemental strand, 33848627 - 33848549
Alignment:
Q  43 ttgcacatttgtccataatgtgtgttattatatcgttacttattgcaattgtgtctc--attaaataaaaattaaacat 119  Q
    ||||||||||||||| ||||||||||||| |||| ||| ||||||  ||||||||||  ||||||| ||||||||||||    
T  33848627 ttgcacatttgtccacaatgtgtgttattgtatctttatttattgtcattgtgtctctgattaaatcaaaattaaacat 33848549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 43 - 116
Target Start/End: Original strand, 10053331 - 10053406
Alignment:
Q  43 ttgcacatttgtccataatgtgtgttattatatcgttacttattgcaattgtgt--ctcattaaataaaaattaaa 116  Q
    |||||||||||  ||||| |||||| |||||||| |||||||||||||||| ||  || ||||||| |||||||||    
T  10053331 ttgcacatttgctcataaggtgtgtcattatatctttacttattgcaattgagtccctgattaaatcaaaattaaa 10053406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 43 - 119
Target Start/End: Original strand, 21266127 - 21266205
Alignment:
Q  43 ttgcacatttgtccataatgtgtgttattatatcgttacttattgcaattgtgtctc--attaaataaaaattaaacat 119  Q
    |||||||||||  ||||| |||| | |||||||| |||||||||||||||| |||||  ||||||| ||| ||||||||    
T  21266127 ttgcacatttgctcataaggtgtatcattatatctttacttattgcaattgagtctctgattaaatcaaatttaaacat 21266205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 154 - 294
Target Start/End: Complemental strand, 33848173 - 33848029
Alignment:
Q  154 ttaatattttgtatgagtactgatttgtaataagataaagtttaattttagagtgatc---caccagtacactagctgacatgacatcggcaatcatatt 250  Q
    ||||||||||||||||| | |||||| ||||||| ||||||||| | |||||||  ||   || ||  ||||||||| ||||| |||   |||| |||||    
T  33848173 ttaatattttgtatgaggattgatttttaataaggtaaagtttagtcttagagtagtctatcagcatgacactagcttacatgtcattaacaattatatt 33848074  T
Q  251 attaactaaacaaaataa-tttttaaaaagaatcaattttctgac 294  Q
    ||| | |||||||| ||| ||||| |||| | |||||||||||||    
T  33848073 attgattaaacaaagtaactttttcaaaatagtcaattttctgac 33848029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 238
Target Start/End: Complemental strand, 12164136 - 12164049
Alignment:
Q  154 ttaatattttgtatgagtactgatttgtaataagataaagtttaattttagagtgatccac---cagtacactagctgacatgacatc 238  Q
    ||||| |||| |||||| ||||||||||||||| | ||||||||  |||| | || |||||   || |||||||||||||||||||||    
T  12164136 ttaatgttttttatgaggactgatttgtaataaaaaaaagtttagatttacaatggtccaccaacaatacactagctgacatgacatc 12164049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 90
Target Start/End: Original strand, 25653670 - 25653739
Alignment:
Q  22 tcacgtcaaattatatggt-tgttgcacatttgtccataatgtgtgttattatatcgttacttattgcaa 90  Q
    |||||||| ||| |||||| | |||||||||||  ||||| |||||| |||||||| |||||||||||||    
T  25653670 tcacgtcagattgtatggtgtattgcacatttgctcataaggtgtgtcattatatctttacttattgcaa 25653739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 172 - 213
Target Start/End: Original strand, 25654589 - 25654630
Alignment:
Q  172 actgatttgtaataagataaagtttaattttagagtgatcca 213  Q
    |||||||||||||||| ||||||||| |||||||||| ||||    
T  25654589 actgatttgtaataaggtaaagtttagttttagagtggtcca 25654630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 207
Target Start/End: Complemental strand, 33752534 - 33752481
Alignment:
Q  154 ttaatattttgtatgagtactgatttgtaataagataaagtttaattttagagt 207  Q
    ||||||||||||||||| | |||||| ||||||| ||||||||| | |||||||    
T  33752534 ttaatattttgtatgaggattgatttttaataaggtaaagtttagtcttagagt 33752481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 105; Significance: 3e-52; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 18 - 267
Target Start/End: Original strand, 41643954 - 41644211
Alignment:
Q  18 catgtcacgtcaaattatatggt-tgttgcacatttgtccataatgtgtgttattatatcgttacttattgcaattgtgtctc--attaaataaaaatta 114  Q
    |||||||||||| |||||||||| | |||||||||||  ||||| |||||| |||||||| ||||||||||||||||| || |  ||||||| |||||||    
T  41643954 catgtcacgtcagattatatggtgtattgcacatttgatcataaggtgtgtcattatatctttacttattgcaattgtatccctgattaaatcaaaatta 41644053  T
Q  115 aacatagattctcatttatacattaagattgaaattctc-ttaatatttt-gtatgagtactgatttgtaataagataaagtttaattttagagtgatcc 212  Q
    ||||||| ||||||||| | || |||||||||||||| | |||||||||| ||||||| |||||||||||||||| || |||||| |||||||||| |||    
T  41644054 aacatagtttctcatttgtgcactaagattgaaattccccttaatatttttgtatgaggactgatttgtaataaggtagagtttagttttagagtggtcc 41644153  T
Q  213 accag---tacactagctgacatgacatcggcaatcatattattaactaaacaaaata 267  Q
    |||||    ||||||||||||||||||||  |||| ||||||||  ||||||||||||    
T  41644154 accagcatgacactagctgacatgacatcaacaattatattattggctaaacaaaata 41644211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 18 - 273
Target Start/End: Complemental strand, 18059328 - 18059066
Alignment:
Q  18 catgtcacgtcaaattatatggt-tgttgcacatttgtccataatgtgtgttattatatcgttacttattgcaattgtgtc--tcattaaataaaaatta 114  Q
    ||||||| |||| |||||||||| | ||||| |||| ||||||||||||||||||||||| ||||||||||||||||||||  | |||| || |||||||    
T  18059328 catgtcatgtcagattatatggtgtattgcatatttatccataatgtgtgttattatatctttacttattgcaattgtgtccttgattagattaaaatta 18059229  T
Q  115 aacatagattctcatttatacattaagattgaaatt-ctcttaatattttgtatgagtactgatttgtaataagataaagtttaattttagagtgatc-- 211  Q
    || |||||||||| ||| | || ||||||||||||| | |||||||||||||||||  |||||||||||| ||| ||||||||| |||||||||| ||      
T  18059228 aatatagattctcgtttgtgcactaagattgaaattccccttaatattttgtatgatgactgatttgtaacaaggtaaagtttagttttagagtggtcta 18059129  T
Q  212 -caccagtacactagctgacatgacatcggcaatcatattattaactaaacaaaataattttt 273  Q
      | ||| ||||||||| ||||||||||| |||| ||| |||| |||||||||||||| ||||    
T  18059128 ttagcagcacactagctaacatgacatcgacaattatactattgactaaacaaaataactttt 18059066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 22 - 242
Target Start/End: Original strand, 15650934 - 15651161
Alignment:
Q  22 tcacgtcaaattatatggt-tgttgcacatttgtccataatgtgtgttattatatcgttacttattgcaattgtgt--ctcattaaataaaaattaaaca 118  Q
    |||||| | |||||||||| | || |||||||| |||||| |||||| |||||||| |||||||||||||||||||  || ||||||| |||||||||||    
T  15650934 tcacgtaagattatatggtgtatttcacatttgcccataaggtgtgtcattatatctttacttattgcaattgtgttcctgattaaatcaaaattaaaca 15651033  T
Q  119 tagattctcatttatacattaagattgaaattctcttaa-tattttgtatgagtactgatttgtaataagataaagtttaattttagagtgatccacc-- 215  Q
    |||| |||||||| | || ||| |||||||||||| ||| ||||||||||||| |||||||||||||||  |||||||||||||||||||| ||||||      
T  15651034 tagaatctcatttgtgcactaaaattgaaattctcctaaatattttgtatgaggactgatttgtaataaagtaaagtttaattttagagtggtccaccgg 15651133  T
Q  216 -agtacactagctgacatgacatcggca 242  Q
     || ||| ||| ||||||||||||||||    
T  15651134 taggacattagatgacatgacatcggca 15651161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 18 - 273
Target Start/End: Original strand, 6177857 - 6178118
Alignment:
Q  18 catgtcacgtcaaattatatggt-tgttgcacatttgtccataatgtgtgttattatatcgttacttattgcaattgtgtctc--attaaataaaaatta 114  Q
    |||||||||||| |||||||||| | |||| |||||| |||||| || ||| |||||||  ||||||||| |||||||||| |  ||||||| ||||| |    
T  6177857 catgtcacgtcagattatatggtgtattgcgcatttgcccataaggtatgtcattatatatttacttattccaattgtgtccctgattaaatcaaaat-a 6177955  T
Q  115 aacatagattctcatttatacattaagattgaaatt-ctcttaatattttgtatgagtactgatttgtaataagataaagtttaattttagagtgatcca 213  Q
    ||||||||||||||||| | || ||||||||||||| | |||||||||||||| ||  |||||||||||||||| ||||||||| || ||||||| ||||    
T  6177956 aacatagattctcatttgtgcactaagattgaaatttcccttaatattttgtacgatgactgatttgtaataaggtaaagtttagttctagagtggtcca 6178055  T
Q  214 ccagta---cactagctgacatgacatcggcaatcatattattaactaaacaaaataattttt 273  Q
    |||  |   ||||||||||||||||||||||| | ||| ||||  ||||||||||||| ||||    
T  6178056 ccaacatgacactagctgacatgacatcggcagttatactattggctaaacaaaataactttt 6178118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 52 - 298
Target Start/End: Complemental strand, 39788541 - 39788289
Alignment:
Q  52 tgtccataatgtgtgttattatatcgttacttattgcaattgtgtctca--ttaaataaaaattaaacatagattctcatttatacattaagattgaaat 149  Q
    |||||||||  ||||| ||||||| |||||||| ||||||| ||||||   |||||| ||||||||||||||||||| |||| | || ||| ||||||||    
T  39788541 tgtccataaaatgtgtcattatattgttacttactgcaattatgtctctggttaaatcaaaattaaacatagattctgatttgtgcactaaaattgaaat 39788442  T
Q  150 tctc-ttaatattttgtatgagtactgatttgtaataagataaagtttaattttagagtgatccaccagta---cactagctgacatgacatcggcaatc 245  Q
    || | ||||||||| ||||||| |||||||||||||||| ||||||||| |||||||||| |||||||| |   ||| |  ||||||||||||| || |     
T  39788441 tccccttaatatttcgtatgagaactgatttgtaataaggtaaagtttatttttagagtggtccaccagcaggacaccaattgacatgacatcgacagtt 39788342  T
Q  246 atattattaactaaacaaaataatttttaaaaagaatcaattttctgactgca 298  Q
    ||| |||| ||||||||||||| ||||| |||| ||||| ||||| |||||||    
T  39788341 atactattgactaaacaaaatactttttcaaaaaaatcagttttcagactgca 39788289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 18 - 273
Target Start/End: Complemental strand, 18779367 - 18779111
Alignment:
Q  18 catgtcacgtcaaattatatggttg-ttgcacatttgtccataat---gtgtgttattatatcgttacttattgcaattgtgt--ctcattaaataaaaa 111  Q
    |||||||| ||| |||||||||||  ||||||||||| |||||||   |||||||||| |||| |||||||||||||||||||  || ||||||| |||     
T  18779367 catgtcacatcagattatatggtttattgcacatttg-ccataataaagtgtgttattttatctttacttattgcaattgtgttcctgattaaatcaaag 18779269  T
Q  112 ttaaacatagattctcatttatacattaagattgaaattctcttaatattttgtatgagtactgatttgtaataagataaagtttaattttagagtgatc 211  Q
    |||||||||||||||||||| | || |||||||||||||       |  ||| |||||  |||||||||||||||| ||||||||| |||||||||||||    
T  18779268 ttaaacatagattctcatttgtgcactaagattgaaatt-------tcctttatatgacgactgatttgtaataaggtaaagtttagttttagagtgatc 18779176  T
Q  212 caccagt---acactagctgacatgacatcggcaatcatattattaactaaacaaaataattttt 273  Q
      |||||   ||||||||| |||||||||||| | | ||| |||| |||||||||||||| ||||    
T  18779175 atccagtaggacactagcttacatgacatcggtagttatactattgactaaacaaaataactttt 18779111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 18 - 207
Target Start/End: Complemental strand, 27138987 - 27138794
Alignment:
Q  18 catgtcacgtcaaattatatggt-tgttgcacatttgtccataatgtgtgttattatatcgttacttattgcaattgtgtctc--attaaataaaaatta 114  Q
    |||||||||||| |||||| ||| | ||||| ||||| |||||| |||||| |||||||| ||||   ||||||||||||| |  ||||||| |||||||    
T  27138987 catgtcacgtcagattatacggtgtattgcatatttgcccataaagtgtgtcattatatctttacgggttgcaattgtgtccctgattaaatcaaaatta 27138888  T
Q  115 aacatagattctcatttatacattaagattgaaattctc-ttaatattttgtatgagtactgatttgtaataagataaagtttaattttagagt 207  Q
    ||||||||||| ||||| | || |||||||||||||| | ||||||||||| ||||| ||| |||||||||||| |||| ||||||||||||||    
T  27138887 aacatagattcccatttgtgcactaagattgaaattcaccttaatattttgcatgaggacttatttgtaataaggtaaaatttaattttagagt 27138794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 82 - 300
Target Start/End: Complemental strand, 18947511 - 18947286
Alignment:
Q  82 ttattgcaattgtgtctc--attaaataaaaattaaacatagattctcatttatacattaagattgaaattctc-ttaatattttgtatgagtactgatt 178  Q
    |||| ||||||||||| |  ||||||| |||| ||||||||||||||||||| | ||||||||||||||||| | ||||||||||||||||| |||||||    
T  18947511 ttatagcaattgtgtccctgattaaatcaaaagtaaacatagattctcatttgtgcattaagattgaaattccccttaatattttgtatgaggactgatt 18947412  T
Q  179 tgtaataagataaagtttaattttagagtgat---ccaccagtacactagctgacatgacatcggcaatcatattattaactaaacaaaataattttt-- 273  Q
    ||||||||| ||||||||| |||||||||| |   ||| ||| |||||||||  ||||| || |||  | ||| |||  |||||||||||||||||||      
T  18947411 tgtaataaggtaaagtttagttttagagtggtacaccagcaggacactagctagcatgatattggccgttatactatcgactaaacaaaataatttttct 18947312  T
Q  274 -aaaaagaatcaattttctgactgcatc 300  Q
     ||||||  ||| |||||||||||||||    
T  18947311 gaaaaag--tcagttttctgactgcatc 18947286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 18 - 288
Target Start/End: Original strand, 41713246 - 41713522
Alignment:
Q  18 catgtcacgtcaaattatatggt-tgttgcacatttgtccataatgtgtgttattatatcgttacttattgcaattgtgtctc--attaaataaaaatta 114  Q
    ||||||||||||  ||||||||| |||| |||||||| ||||||  ||||| |||||||   |||||||| ||||||| || |  ||||||| |||||||    
T  41713246 catgtcacgtca--ttatatggtgtgttacacatttgcccataagatgtgtcattatatgtatacttattacaattgtttccctaattaaatcaaaatta 41713343  T
Q  115 aacatagattctcatttatacattaagattgaaattctcttaatattttgtatgagtactgatttgtaataagataaagtttaattttagagtgatccac 214  Q
    |||||||||||||| || | || ||| | |||||||| | | ||||||||| |||| |||||||||||||||||||||  ||| |||||||||| |||||    
T  41713344 aacatagattctcacttgtgcactaaaaatgaaattccccttatattttgtgtgaggactgatttgtaataagataaaacttagttttagagtggtccac 41713443  T
Q  215 cagta---cactagctgacatgacatcggcaatcatattattaactaaacaaaataa--tttttaaaaagaatcaattt 288  Q
    ||  |   ||||||||||||||| || |  ||| ||| |||| ||||||||||||||  |||| ||||| |||||||||    
T  41713444 caacatgacactagctgacatgatattgataattatactattgactaaacaaaataactttttcaaaaaaaatcaattt 41713522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 18 - 289
Target Start/End: Original strand, 42005471 - 42005737
Alignment:
Q  18 catgtcacgtcaaattatatggt-tgttgcacatttgtccataatgtgtgttattatatcgttacttattgcaattgtgtctc---attaaataaaaatt 113  Q
    ||||||||||||  ||||||||| | ||||||||| | |||||| |||||| |||| ||| |||||||||| ||||||||| |   ||||||| ||||||    
T  42005471 catgtcacgtca--ttatatggtgtattgcacatt-gcccataaggtgtgtcattacatctttacttattgtaattgtgtcccctgattaaatcaaaatt 42005567  T
Q  114 aaacatagattctcatttatacattaagattgaaattctcttaatattttgtatgagtactgatttgtaataagataaagtttaattttagagtgatc-- 211  Q
    |||||||||||||||||| | || ||||||||||||| || | ||||||||||||||  |||||||||||||| |||||  ||||||||| |||| ||      
T  42005568 aaacatagattctcatttgtgcactaagattgaaattttccttatattttgtatgagagctgatttgtaataaaataaaacttaattttaaagtggtcca 42005667  T
Q  212 -caccagtacactagctgacatgacatcggcaatcatattattaactaaacaaaataatttttaaaaagaatcaatttt 289  Q
     || ||  |||||||||||||||| |||         | ||||||||||||||||||||||||  ||| ||||||||||    
T  42005668 tcaacatcacactagctgacatgatatc---------actattaactaaacaaaataatttttttaaaaaatcaatttt 42005737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 18 - 298
Target Start/End: Original strand, 19073440 - 19073722
Alignment:
Q  18 catgtcacgtcaaattatatggt-tgttgcacatttgtccataatgtgtgttattatatcgttacttattgcaattgtgtctc--attaaataaaaatta 114  Q
    |||||||||||| |||||||||| | || |||||||||| |||| |||||| |||||||  |||||||||| ||||||||| |  ||||||| ||| |||    
T  19073440 catgtcacgtcagattatatggtgtattccacatttgtctataaggtgtgtcattatatatttacttattgaaattgtgtccctgattaaatcaaagtta 19073539  T
Q  115 aacatagattctcatttatacattaagattgaaattctcttaatattttgtatgagtactgatttgtaataagataaagtttaattttagagtgat---c 211  Q
    |||||||||||||||||     ||   | ||||||||  |||||||||| || ||| |||||||||||||||| |||| |||| ||||| |||| |   |    
T  19073540 aacatagattctcattt-----tttgcactgaaattcctttaatattttatacgaggactgatttgtaataaggtaaaatttagttttaaagtggttcac 19073634  T
Q  212 caccagtacactagctgacatgacatcggcaatcatattattaactaaacaaaataattttta-aaaagaatcaattttctgactgca 298  Q
    || ||| |||||  |||||||||||||  |||| ||| |||| |||||| ||||||| ||||| |||| | |||||||||||| ||||    
T  19073635 cagcaggacactgactgacatgacatcaacaattatactattgactaaataaaataacttttacaaaaaagtcaattttctgattgca 19073722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 18 - 175
Target Start/End: Complemental strand, 34441887 - 34441729
Alignment:
Q  18 catgtcacgtcaaattatatggt-tgttgcacatttgtccataatgtgtgttattatatcgttacttattgcaattgtgtctc--attaaataaaaatta 114  Q
    ||||||||||||  ||||||||| | ||||||||||| ||||||  |||||  ||||||| |||||||||||||||||||| |  ||||||| |||||||    
T  34441887 catgtcacgtca--ttatatggtgtattgcacatttgcccataagatgtgtcgttatatctttacttattgcaattgtgtccctgattaaatcaaaatta 34441790  T
Q  115 aacatagattctcatttatacattaagattgaaattctcttaatattttgtatgagtactg 175  Q
    ||||||||||||||||| | || ||| |||||||||| | | |||||||||||||| ||||    
T  34441789 aacatagattctcatttgtgcactaaaattgaaattccccttatattttgtatgaggactg 34441729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 116 - 214
Target Start/End: Complemental strand, 17244935 - 17244836
Alignment:
Q  116 acatagattctcatttatacattaagattgaaattctc-ttaatattttgtatgagtactgatttgtaataagataaagtttaattttagagtgatccac 214  Q
    |||||||||||||||| | || ||||||||||||| || ||||||||||||||||| | |||||||||||||| ||||||||| |||||||||| |||||    
T  17244935 acatagattctcatttgtgcactaagattgaaattttccttaatattttgtatgaggagtgatttgtaataaggtaaagtttagttttagagtggtccac 17244836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 142 - 273
Target Start/End: Complemental strand, 34441718 - 34441584
Alignment:
Q  142 attgaaattctcttaatattttgtatgagtactgatttgtaataagataaagtttaattttagagtgatccaccagta---cactagctgacatgacatc 238  Q
    |||||||||| | | |||||||||||||| |||||||||||||||||||||| ||| ||||| ||||||||||||  |   ||||||||||||||| | |    
T  34441718 attgaaattccccttatattttgtatgaggactgatttgtaataagataaagcttagttttaaagtgatccaccaacatgacactagctgacatgataac 34441619  T
Q  239 ggcaatcatattattaactaaacaaaataattttt 273  Q
    |||||| ||| |||| || ||| ||||||| ||||    
T  34441618 ggcaattatactattgaccaaataaaataactttt 34441584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 119 - 208
Target Start/End: Original strand, 19093640 - 19093730
Alignment:
Q  119 tagattctcatttatacattaagattgaaattctc-ttaatattttgtatgagtactgatttgtaataagataaagtttaattttagagtg 208  Q
    ||||||| ||||| | || |||||||||||||||| ||||||||||||| ||| |||||||||||||||| ||||||||| ||||||||||    
T  19093640 tagattcccatttgtgcagtaagattgaaattctccttaatattttgtaagaggactgatttgtaataaggtaaagtttagttttagagtg 19093730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 18 - 119
Target Start/End: Original strand, 30844929 - 30845033
Alignment:
Q  18 catgtcacgtcaaattatatggt-tgttgcacatttgtccataatgtgtgttattatatcgttacttattgcaattgtgtctc--attaaataaaaatta 114  Q
    |||||||||||| |||||||| | | ||||||||||||||||||  ||||| |||| ||| |||||||||||| ||| |||||  ||||||| |||||||    
T  30844929 catgtcacgtcagattatatgatatattgcacatttgtccataagatgtgtcattaaatctttacttattgcatttgagtctctaattaaatcaaaatta 30845028  T
Q  115 aacat 119  Q
    |||||    
T  30845029 aacat 30845033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 69 - 217
Target Start/End: Complemental strand, 38250048 - 38249901
Alignment:
Q  69 attatatcgttacttattgcaattgtgtctc--attaaataaaaattaaacatagattctcatttatacattaagattgaaattctc-ttaatattttgt 165  Q
    |||||||| |||||||||||||||||||| |  ||||||| |||||||| ||  |||||  ||||   |  |||||||||||||| | ||||||||  ||    
T  38250048 attatatctttacttattgcaattgtgtccctgattaaatcaaaattaatca--gattccaatttgcgctctaagattgaaattccccttaatatt--gt 38249953  T
Q  166 atgagtactgatttgtaataagataaagtttaattttagagtgatccaccag 217  Q
    ||||| |||||||||||| ||| |||| |||| |||||||||| ||||||||    
T  38249952 atgaggactgatttgtaacaaggtaaaatttagttttagagtggtccaccag 38249901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 116 - 273
Target Start/End: Complemental strand, 18514597 - 18514436
Alignment:
Q  116 acatagattctcatttatacattaagattgaaa-ttctcttaatattttgtatgagtactgatttgtaataagataaagtttaattttagagtgatccac 214  Q
    |||||||||||||||| | || ||||||||||| |||  ||||||||||||||||  | |||||| ||||||  ||||||| | | ||| |||| |||||    
T  18514597 acatagattctcatttgtgcactaagattgaaatttccattaatattttgtatgatgattgatttataataaagtaaagttcagtcttatagtggtccac 18514498  T
Q  215 cag---tacactagctgacatgacatcggcaatcatattattaactaaacaaaataattttt 273  Q
    |||    ||||||| |||||||||||   || | ||| ||||| ||||||||||||| ||||    
T  18514497 cagcacgacactagttgacatgacattaacagttatactattagctaaacaaaataactttt 18514436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 199
Target Start/End: Original strand, 32652621 - 32652666
Alignment:
Q  154 ttaatattttgtatgagtactgatttgtaataagataaagtttaat 199  Q
    ||||||||||||||||| |||||||||||||||  |||| ||||||    
T  32652621 ttaatattttgtatgaggactgatttgtaataaagtaaaatttaat 32652666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 154 - 186
Target Start/End: Original strand, 7565511 - 7565543
Alignment:
Q  154 ttaatattttgtatgagtactgatttgtaataa 186  Q
    ||||||||||||||||| |||||||||||||||    
T  7565511 ttaatattttgtatgaggactgatttgtaataa 7565543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 154 - 186
Target Start/End: Complemental strand, 40912516 - 40912484
Alignment:
Q  154 ttaatattttgtatgagtactgatttgtaataa 186  Q
    ||||||||||||||||| |||||||||||||||    
T  40912516 ttaatattttgtatgaggactgatttgtaataa 40912484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 23 - 119
Target Start/End: Complemental strand, 43446419 - 43446320
Alignment:
Q  23 cacgtcaaattatatggt-tgttgcacatttgtccataatgtgtgttattatatcgttacttattgcaattgtgtc--tcattaaataaaaattaaacat 119  Q
    |||||||||||||||||| |||||||| ||||  ||||  || ||| | |||||| ||||||||| ||||||||||  | || |||| ||||||||||||    
T  43446419 cacgtcaaattatatggtgtgttgcacgtttgctcatagggtatgtcactatatctttacttattacaattgtgtccttaataaaattaaaattaaacat 43446320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 101; Significance: 7e-50; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 18 - 217
Target Start/End: Complemental strand, 22955278 - 22955075
Alignment:
Q  18 catgtcacgtcaaattatatggt-tgttgcacatttgtccataatgtgtgttattatatcgttacttattgcaattgtgtctc--attaaataaaaatta 114  Q
    ||||||||||||||||||||||| | |||||||||||  ||||| || ||| ||| |||| |||||||||||||||||||| |  ||||||| || ||||    
T  22955278 catgtcacgtcaaattatatggtgtattgcacatttgctcataaggtatgtcattgtatctttacttattgcaattgtgtcccttattaaatcaacatta 22955179  T
Q  115 aacatagattctcatttatacattaagattgaaatt-ctcttaatattttgtatgagtactgatttgtaataagataaagtttaattttagagtgatcca 213  Q
    ||||||||||||||||| | || ||||||||||||| | |||||||||||||||||| |||||||||||||||| ||||||||| |||||||||| ||||    
T  22955178 aacatagattctcatttgtgcactaagattgaaatttcccttaatattttgtatgagaactgatttgtaataaggtaaagtttagttttagagtggtcca 22955079  T
Q  214 ccag 217  Q
    ||||    
T  22955078 ccag 22955075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 18 - 217
Target Start/End: Complemental strand, 4618721 - 4618518
Alignment:
Q  18 catgtcacgtcaaattatatggt-tgttgcacatttgtccataatgtgtgttattatatcgttacttattgcaattgtgt--ctcattaaataaaaatta 114  Q
    |||||| | |||||||||||||| | |||||||||||| |||||  ||||| |||||||  ||| ||||||||||||| |  |||||||||| |||||||    
T  4618721 catgtcgcttcaaattatatggtgtattgcacatttgttcataaaatgtgtcattatatatttatttattgcaattgtatacctcattaaatcaaaatta 4618622  T
Q  115 aacatagattctcatttatacattaagattgaaattctc-ttaatattttgtatgagtactgatttgtaataagataaagtttaattttagagtgatcca 213  Q
    ||||||||||||||||| | ||  ||||||||||||| | ||||||||||||||||  ||||||||||| |||||||||||||| |||||||||| ||||    
T  4618621 aacatagattctcatttgtgcaccaagattgaaattccccttaatattttgtatgatgactgatttgtagtaagataaagtttagttttagagtggtcca 4618522  T
Q  214 ccag 217  Q
    ||||    
T  4618521 ccag 4618518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 64 - 295
Target Start/End: Original strand, 49002353 - 49002591
Alignment:
Q  64 gtgttattatatcgttacttattgcaattgtgtctc--attaaataaaaattaaacatagattctcatttatacattaagattgaaattctc-ttaatat 160  Q
    |||| |||||||| ||||||||||||||||||| ||  ||||||| |||||||||||||||||| ||||| | || ||||||| |||||| | |||||||    
T  49002353 gtgtcattatatctttacttattgcaattgtgtgtctgattaaatcaaaattaaacatagattcccatttgtgcactaagattaaaattccccttaatat 49002452  T
Q  161 tttgtatgagtactgatttgtaataagataaagtttaattttagagtgatccac---cagtacactagctgacatgacatcggcaatcatattattaact 257  Q
    |||||||||| ||||||||||||| || ||||||||| |||||||||| |||||   ||| ||| ||||||  ||||||||| |||| ||| |||| | |    
T  49002453 tttgtatgaggactgatttgtaatgaggtaaagtttagttttagagtggtccaccagcaggacattagctgctatgacatcgacaattatactattgatt 49002552  T
Q  258 aaacaaaataa-tttttaaaaagaatcaattttctgact 295  Q
    ||| ||||||| ||||| |||| ||||| ||||||||||    
T  49002553 aaataaaataactttttcaaaaaaatcagttttctgact 49002591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 18 - 216
Target Start/End: Complemental strand, 37854260 - 37854059
Alignment:
Q  18 catgtcacgtcaaattatatggt-tgttgcacatttgtccataatgtgtgttattatatcgttacttattgcaattgtgtctc--attaaataaaaatta 114  Q
    |||||||||||| |||||||||| | |||||||||||  ||||| || ||||  |||||| ||||| |||||||||||||| |  ||||||| |||||||    
T  37854260 catgtcacgtcacattatatggtgtattgcacatttgctcataaggtatgtt--tatatctttactgattgcaattgtgtccctgattaaatcaaaatta 37854163  T
Q  115 aacatagattctcatttatacattaagattgaaatt-ctcttaatattttgtatgagtactg-atttgtaataagataaagtttaattttagagtgatcc 212  Q
    |||||||||| |||||| |||| ||||||||||||| | |||||||||||||||||| |||| ||||| |||||  |||||||||||||||||||| |||    
T  37854162 aacatagattttcatttgtacactaagattgaaattccccttaatattttgtatgaggactgaatttggaataaagtaaagtttaattttagagtggtcc 37854063  T
Q  213 acca 216  Q
    ||||    
T  37854062 acca 37854059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 18 - 298
Target Start/End: Complemental strand, 23402337 - 23402050
Alignment:
Q  18 catgtcacgtcaaattatatggt-tgttgcacatttgtccataatgtgtgttattatatcgttacttattgcaattgtgtctc--attaaataaaaatta 114  Q
    |||||||||||| |||||||||| | |||| |||||||||||||  | ||| |||||||  ||||||||| |||||||||| |  ||||||| ||||| |    
T  23402337 catgtcacgtcatattatatggtgtattgcgcatttgtccataagatatgtcattatatatttacttatttcaattgtgtccctgattaaatcaaaat-a 23402239  T
Q  115 aacatagattctcatttatacattaagattgaaatt-ctcttaatattttgtatgagtactgatttgtaataagataaagtttaattttagagtgat--- 210  Q
    ||||| ||||||||||| | || ||||| ||||||| | |||||||||||||| ||  |||||||||||||| ||||||||||| |||||||||| |       
T  23402238 aacattgattctcatttgtgcactaagactgaaatttcccttaatattttgtacgatgactgatttgtaataggataaagtttagttttagagtggtccc 23402139  T
Q  211 ccaccagtacactagctgacatgacatcggcaatcatattattaactaaacaaaataa-tttttaaaaagaatcaattttctgactgca 298  Q
    ||| ||  |||||||||||||| ||||||||| | ||| ||||  ||||||||||||| ||||| |||| | ||| |||| ||||||||    
T  23402138 ccaacatgacactagctgacataacatcggcagttatactattggctaaacaaaataacttttttaaaaaagtcagttttttgactgca 23402050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 18 - 258
Target Start/End: Original strand, 5781600 - 5781844
Alignment:
Q  18 catgtcacgtcaaattatatggt-tgttgcacatttgtccataatgtgtgttattatatcgttacttattgcaattgtgtc--tcattaaataaaaatta 114  Q
    ||||||||||||  ||||||||| | ||||| ||||| ||||||  ||||| |||||||| ||| ||||||||||||||||  | ||||||| |||||||    
T  5781600 catgtcacgtca--ttatatggtgtattgcatatttgaccataaaatgtgtcattatatctttatttattgcaattgtgtccttgattaaatcaaaatta 5781697  T
Q  115 aacatagattctcatttatacattaagattgaaattctcttaatattttgtatgagtactgatttgtaataagataaagtttaattttagagtgat---c 211  Q
    ||||||||||||||||| | || |||||||||||||| ||| |||||||||||||  |||||||||||||||  ||||  ||| ||||| |||| |   |    
T  5781698 aacatagattctcatttgtgcactaagattgaaattccctttatattttgtatgatgactgatttgtaataaagtaaaacttagttttaaagtggtgcac 5781797  T
Q  212 caccagtacactagctgacatgacatcggcaatcatattattaacta 258  Q
    || ||  |||||||||||||||| ||||||||| ||| |||| ||||    
T  5781798 caacatgacactagctgacatgatatcggcaattatactattgacta 5781844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 19 - 273
Target Start/End: Original strand, 7743002 - 7743274
Alignment:
Q  19 atgtcacgtcaaattatatggt-tgttgcacatttgtccataatgtgtgttattatatcgttacttattgcaattgtg--tctcattaaataaaaattaa 115  Q
    ||||||||| | |||||||||| | ||| |||||||||||||| | |||| |||||||| ||||||||||||||||||   || ||||||| ||||||||    
T  7743002 atgtcacgttagattatatggtgtattgtacatttgtccataaggcgtgtcattatatctttacttattgcaattgtgcccctgattaaattaaaattaa 7743101  T
Q  116 acatagattct-----------catttatacattaagattgaaattctc-ttaatattttgtatgagtactgatttgtaataagataaagtttaatttta 203  Q
    |||||||||||           |||||||||| |||||||||||| ||| |||||||||| ||||||  ||| ||||||||||| ||||||||| |||||    
T  7743102 acatagattctcatttgttttccatttatacactaagattgaaatgctctttaatattttatatgagggctgctttgtaataaggtaaagtttagtttta 7743201  T
Q  204 gagtgatc---caccagtacactagctgacatgacatcggcaatcatattattaactaaacaaaataattttt 273  Q
    ||||| ||   || || |||| |||| |||||||||||| || | ||| |||| |||||||||||||| ||||    
T  7743202 gagtggtccatcaacattacattagccgacatgacatcgacagttatactattgactaaacaaaataactttt 7743274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 63 - 208
Target Start/End: Original strand, 40382016 - 40382165
Alignment:
Q  63 tgtgttattatatcgttacttattgcaatt-gtgtctc--attaaataaaaattaaacatagattctcatttatacattaagattgaaatt-ctcttaat 158  Q
    ||||| |||||||| ||||||||| ||||| ||||| |  ||||||||||||||||||||||||| |||||| | || ||||||||||||| | ||||||    
T  40382016 tgtgtcattatatctttacttattacaatttgtgtccctaattaaataaaaattaaacatagattatcatttgtgcactaagattgaaatttcccttaat 40382115  T
Q  159 attttgtatgagtactgatttgtaataagataaagtttaattttagagtg 208  Q
    |||||||||| | |||||||||||||||| ||||||||| ||||||||||    
T  40382116 attttgtatgcggactgatttgtaataaggtaaagtttagttttagagtg 40382165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 80 - 295
Target Start/End: Original strand, 4902465 - 4902687
Alignment:
Q  80 acttattgcaattgtgtctc--attaaataaaaattaaacatagattctcatttatacattaagattgaaattctc-ttaatattttgtatgagtactga 176  Q
    |||||||||||| ||||| |  ||||||| ||||||||||||||||||  | |||| || |||||| ||||||| | ||||||||||||||||||||| |    
T  4902465 acttattgcaatagtgtccctgattaaatcaaaattaaacatagattccaaattatgcactaagatagaaattccccttaatattttgtatgagtactaa 4902564  T
Q  177 tttgtaataagataaagtttaattttagagtgatccac---cagtacactagctgacatgacatcggcaatcatattattaactaaacaaaataa-tttt 272  Q
    ||||||||||| ||||||||| |||||||||| |  ||   ||| ||| || || |||||| ||||||| | ||| |||| |||||||||||||| ||||    
T  4902565 tttgtaataaggtaaagtttagttttagagtggtttactggcaggacaataactaacatgatatcggcagttatactattgactaaacaaaataactttt 4902664  T
Q  273 taaaaagaatcaattttctgact 295  Q
    | |||| | ||||||||||||||    
T  4902665 tcaaaaaagtcaattttctgact 4902687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 23 - 237
Target Start/End: Complemental strand, 8133520 - 8133299
Alignment:
Q  23 cacgtcaaattatatggt-tgttgcacatttgtccataatgtgtgttattatatcgttacttattgcaattgtgtctc--attaaataaaaattaaacat 119  Q
    ||||||| |||||||||| | |||||| ||||   |||| || ||| |||||||| |||||||||||||||| ||| |  ||||||| |||||||||| |    
T  8133520 cacgtcagattatatggtgtattgcacgtttgcttataaggtctgtcattatatcattacttattgcaattgcgtccctaattaaatcaaaattaaacgt 8133421  T
Q  120 agattctcatttatacattaagattgaaattctc-ttaatattttgtatgagtactgatttgtaataagataaagtttaattttagagtgatccaccag- 217  Q
    ||||||| |||| | || |||||||||||||| | ||||||||||  ||||  |||||||||||||||| ||||||||| |||||||||| | ||||||     
T  8133420 agattcttatttgtgcagtaagattgaaattccccttaatattttacatgaagactgatttgtaataaggtaaagtttagttttagagtggttcaccagc 8133321  T
Q  218 --tacactagctgacatgacat 237  Q
       |||| ||||||||||||||    
T  8133320 aagacaccagctgacatgacat 8133299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 136 - 214
Target Start/End: Complemental strand, 10675104 - 10675025
Alignment:
Q  136 attaagattgaaattctc-ttaatattttgtatgagtactgatttgtaataagataaagtttaattttagagtgatccac 214  Q
    ||||||||| |||||| | ||||||||||||||||| ||| |||||||||||  ||||||||| | ||||||||||||||    
T  10675104 attaagatttaaattccccttaatattttgtatgaggactaatttgtaataaagtaaagtttagtcttagagtgatccac 10675025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 43 - 119
Target Start/End: Original strand, 19786392 - 19786470
Alignment:
Q  43 ttgcacatttgtccataatgtgtgttattatatcgttacttattgcaattgtgtc--tcattaaataaaaattaaacat 119  Q
    |||||||||||||  ||| |||||| |||||||| |||||||||||||||| |||  | ||||||| ||||||||||||    
T  19786392 ttgcacatttgtctgtaaggtgtgtcattatatctttacttattgcaattgagtccttgattaaatcaaaattaaacat 19786470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 97; Significance: 2e-47; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 19 - 301
Target Start/End: Original strand, 15964183 - 15964472
Alignment:
Q  19 atgtcacgtcaaattatatggt-tgttgcacatttgtccataatgtgtgttattatatcgttacttattgcaattgtgtctc--attaaataaaaattaa 115  Q
    ||||||||||||||||||| || | ||||||||||||||||||  ||||| |||||||  ||||| ||  |||||||||| |  ||||||| ||||||||    
T  15964183 atgtcacgtcaaattatatagtgtattgcacatttgtccataagatgtgtcattatatacttactgatatcaattgtgtccctgattaaatcaaaattaa 15964282  T
Q  116 acatagattctcatttatacattaagattgaaattctc-ttaatattttgtatgagtactgatttgtaataagataaagtttaattttagagtgatccac 214  Q
    |||||||||| ||||| | || |||||||||||||| | |||||||||| |||||| |||||||||||||||| |||| |||| |||||||||| | ||     
T  15964283 acatagattcacatttgtgcactaagattgaaattccccttaatattttatatgaggactgatttgtaataaggtaaaatttagttttagagtggtacat 15964382  T
Q  215 cagt---acactagctgacatgacatcggcaatcatattattaactaaacaaaataatttttaaaaagaatcaattttctgactgcatcg 301  Q
     |||   ||||||||||||||||||||| || | ||| ||||  ||||||||||||||||||  ||| ||  |||||||| |||||||||    
T  15964383 tagtaggacactagctgacatgacatcgacagttatactattggctaaacaaaataatttttctaaaaaaataattttctaactgcatcg 15964472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 18 - 217
Target Start/End: Original strand, 27118412 - 27118615
Alignment:
Q  18 catgtcacgtcaaattatatggt-tgttgcacatttgtccataatgtgtgttattatatcgttacttattgcaattgtgtctc--attaaataaaaatta 114  Q
    |||| ||||||| |||||||| | | |||||||||||| ||||| |||||| |||||||| |||||||||||||||||||| |  ||||||| |||||||    
T  27118412 catgccacgtcatattatatgatgtattgcacatttgttcataaggtgtgtcattatatctttacttattgcaattgtgtccctgattaaatcaaaatta 27118511  T
Q  115 aacatagattctcatttatacattaagattgaaattctc-ttaatattttgtatgagtactgatttgtaataagataaagtttaattttagagtgatcca 213  Q
    ||||||||||||||||  | || |||||||||||||| | ||||||||||||||||  |||||||||||||||| |||||| || |||||||||||||||    
T  27118512 aacatagattctcattcgtgcactaagattgaaattccccttaatattttgtatgatgactgatttgtaataaggtaaagtatagttttagagtgatcca 27118611  T
Q  214 ccag 217  Q
    ||||    
T  27118612 ccag 27118615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 46 - 239
Target Start/End: Complemental strand, 13876856 - 13876657
Alignment:
Q  46 cacatttgtccataatgtgtgttattatatcgttacttattgcaattgtgtc--tcattaaataaaaattaaacatagattctcatttatacattaagat 143  Q
    |||||||| |||||| |||||| |||||||  ||| ||||||||||||| ||  | ||||||| |||||||||||||||||| ||||| | || ||| ||    
T  13876856 cacatttgcccataaagtgtgtcattatatttttagttattgcaattgtatccttgattaaatcaaaattaaacatagattcccatttgtgcactaatat 13876757  T
Q  144 tgaaattctc-ttaatattttgtatgagtactgatttgtaataagataaagtttaattttagagtgatccaccag---tacactagctgacatgacatcg 239  Q
    |||||||| | |||||||||||||||||||| ||||||||||||| ||||||||| |||||||||| ||||||||    |||||||||||||||||||||    
T  13876756 tgaaattccccttaatattttgtatgagtaccgatttgtaataaggtaaagtttagttttagagtggtccaccagcatgacactagctgacatgacatcg 13876657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 18 - 273
Target Start/End: Complemental strand, 10758266 - 10758004
Alignment:
Q  18 catgtcacgtcaaattatatggt-tgttgcacatttgtccataatgtgtgttattatatcgttacttattgcaattgtgtctc--attaaataaaaatta 114  Q
    |||| ||| ||| |||||||||| | ||| ||||||| | ||| ||||||| |||||||  |||||||||||||||||||| |  ||||||| |||||||    
T  10758266 catgccacatcagattatatggtgtattgaacatttgcctatagtgtgtgtcattatatttttacttattgcaattgtgtccctaattaaatcaaaatta 10758167  T
Q  115 aacatagattctcatttatacattaagattgaaa-ttctcttaatattttgtatgagtactgatttgtaataagataaagtttaattttagagtgatcca 213  Q
    |||||| |||||||||| | || ||||||||||| ||||||||||||||| |||||  |||||  ||||||||   ||| |||| |||||||||||||||    
T  10758166 aacatatattctcatttgtgcactaagattgaaatttctcttaatattttatatgatgactgaagtgtaataaagcaaaatttagttttagagtgatcca 10758067  T
Q  214 c---cagtacactagctgacatgacatcggcaatcatattattaactaaacaaaataattttt 273  Q
    |   ||| |||||| || |||| ||||||||| | ||| ||||| ||||||||||||||||||    
T  10758066 ccagcaggacactaactcacataacatcggcagttatactattagctaaacaaaataattttt 10758004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 134 - 298
Target Start/End: Original strand, 16135524 - 16135693
Alignment:
Q  134 acattaagattgaaattctc-ttaatattttgtatgagtactgatttgtaataagataaagtttaattttagagtgatccaccagt---acactagctga 229  Q
    |||||||||||||||||||| ||||||||||||||||| |||||||||||||| | ||||||||| |||||||||| |||||||||   ||||||| |||    
T  16135524 acattaagattgaaattctcattaatattttgtatgagaactgatttgtaatagggtaaagtttagttttagagtggtccaccagtatgacactagttga 16135623  T
Q  230 catgacatcggcaatcatattattaactaaacaaaataa-tttttaaaaagaatcaattttctgactgca 298  Q
    |||||||||| || | ||| ||||| ||||||||||||| ||||| |||| |   |||||||||||||||    
T  16135624 catgacatcgacagttatactattagctaaacaaaataactttttcaaaaaagcaaattttctgactgca 16135693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 18 - 295
Target Start/End: Original strand, 16127602 - 16127883
Alignment:
Q  18 catgtcacgtcaaattatatggt-tgttgcacatttgtccataatgtgtgttattatatcgttacttattgcaattgtgtctcattaaataaaaattaaa 116  Q
    |||| ||||||| |||||||| | | ||||||||||   ||||| |||||| |||||||  |||||||||||||||||  || | ||||| ||| |||||    
T  16127602 catgacacgtcagattatatgatgtattgcacatttactcataaggtgtgtcattatatgtttacttattgcaattgtccctgaataaatcaaa-ttaaa 16127700  T
Q  117 catagattctcatttatacattaagattgaaattctc-ttaatattttgtatgagtactgatttgtaataagataaagtttaattttagagtgatccacc 215  Q
    ||||||||||||||| | || ||||||||| |||| | ||||||||||  ||||| |||| ||||||||||| ||||||||| ||||| |||  ||||||    
T  16127701 catagattctcatttgtgcactaagattgagattccccttaatattttaaatgaggactggtttgtaataaggtaaagtttagttttaaagtagtccacc 16127800  T
Q  216 ---agtacactagctgacatgacatcggcaatcatattattaactaaacaaaataatttttaaaaagaatcaattttctgact 295  Q
       || |||||| ||||||| |||||| || | ||| |||| |||||| ||||||| |||| |||| | ||||||||||||||    
T  16127801 tgcaggacactaactgacataacatcgacagtaatactattgactaaataaaataactttttaaaaaagtcaattttctgact 16127883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 31 - 304
Target Start/End: Complemental strand, 31805037 - 31804767
Alignment:
Q  31 attatatggt-tgttgcacatttgtccataatgtgtgttattatatcgttacttattgcaattgtgtctc--attaaataaaaattaaacatagattctc 127  Q
    |||||||||| | ||||||||||| | ||||  | ||| |||||||| |||||| ||| ||||||||| |  ||||||| ||||||||||||||||||||    
T  31805037 attatatggtgtattgcacatttgccgataacatatgtcattatatctttacttcttgaaattgtgtcactgattaaatcaaaattaaacatagattctc 31804938  T
Q  128 atttatacattaagattgaaa-ttctcttaatattttgtatgagtactgatttgtaataagataaagtttaattttagagtgatccaccagtacactagc 226  Q
    |||||| || ||||||||||| ||| ||||||||||| |||||| | || ||||||||||| ||||||||||||||| ||||        ||||| ||||    
T  31804937 atttatgcactaagattgaaatttcccttaatattttatatgagaattggtttgtaataaggtaaagtttaattttatagtg--------gtacattagc 31804846  T
Q  227 tgacatgacatcggcaatcatattattaactaaacaaaataatttt--taaaaagaatcaattttctgactgcatcgcac 304  Q
     ||||| |||||||  || ||| ||||   |||||||||||| |||  |||||| ||||||||||||||||||| |||||    
T  31804845 cgacataacatcggtcattatactattggttaaacaaaataactttactaaaaa-aatcaattttctgactgcaccgcac 31804767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 21 - 295
Target Start/End: Original strand, 25943283 - 25943563
Alignment:
Q  21 gtcacgtcaaattatatggt-tgttgcacatttgtccataatgtgtgttattatatcgttacttattgcaattgtgtctc--attaaataaaaattaaac 117  Q
    ||||||||| |||||||||| | |||||| ||||   |||||| |||  |||||||| ||| |||||| |||| ||| |   ||||||| ||||||||||    
T  25943283 gtcacgtcagattatatggtgtattgcacgtttgctgataatgcgtgccattatatctttatttattgtaattttgtttttgattaaatcaaaattaaac 25943382  T
Q  118 atagattctcatttatacattaagattgaaatt-ctcttaatattttgtatgagtactgatttgtaataagataaagtttaattttagagtgatccac-- 214  Q
    |||||||||||||| | || ||||||||||||| |||||||||||||||| ||  ||||||||||||||||||||| |||| |  ||||||| |||||      
T  25943383 atagattctcatttgtgcaataagattgaaatttctcttaatattttgtacgatgactgatttgtaataagataaaatttagtagtagagtggtccacca 25943482  T
Q  215 -cagtacactagctgacatgacatcggcaatcatattattaactaaacaaaataat-ttttaaaaagaatcaattttctgact 295  Q
     ||| |  |||| |||||||| |||| |||| ||| ||||  |||||||||||||| |||| |||||  ||||||||||||||    
T  25943483 acagaatgctagttgacatgagatcgacaattatactattggctaaacaaaataatgtttttaaaag--tcaattttctgact 25943563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 43 - 139
Target Start/End: Original strand, 16132583 - 16132681
Alignment:
Q  43 ttgcacatttgtccataatgtgtgttattatatcgttacttattgcaattgtgtctc--attaaataaaaattaaacatagattctcatttatacatta 139  Q
    |||||||||||  |||||||||||| |||||||| ||||||||||||||||||||||  ||||||| |||||||||||||||||||||||| |||||||    
T  16132583 ttgcacatttgcacataatgtgtgtcattatatctttacttattgcaattgtgtctctgattaaatcaaaattaaacatagattctcatttgtacatta 16132681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 116 - 216
Target Start/End: Complemental strand, 3120727 - 3120626
Alignment:
Q  116 acatagattctcatttatacattaagattgaaattctc-ttaatattttgtatgagtactgatttgtaataagataaagtttaattttagagtgatccac 214  Q
    |||||||||| ||||| | |||||| |||||||| | | ||||||| ||||||||| |||||||||||||||| ||||||||||| |||||||| |||||    
T  3120727 acatagattcacatttgtgcattaaaattgaaataccccttaatatattgtatgaggactgatttgtaataaggtaaagtttaatcttagagtggtccac 3120628  T
Q  215 ca 216  Q
    ||    
T  3120627 ca 3120626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 116 - 208
Target Start/End: Original strand, 47554938 - 47555031
Alignment:
Q  116 acatagattctcatttatacattaagattgaaattc-tcttaatattttgtatgagtactgatttgtaataagataaagtttaattttagagtg 208  Q
    |||||||||||||||| | || ||||||| |||||| ||||||||||||||||||  |||||||||||||||| ||||||||| | ||||||||    
T  47554938 acatagattctcatttgtgcactaagatttaaattcctcttaatattttgtatgatgactgatttgtaataaggtaaagtttactcttagagtg 47555031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 174 - 273
Target Start/End: Original strand, 5500596 - 5500697
Alignment:
Q  174 tgatttgtaataagataaagtttaattttagagtgatccac--cagtacactagctgacatgacatcggcaatcatattattaactaaacaaaataattt 271  Q
    |||||| ||||||| |||| |||| ||||||||||||||||  ||| |||||||||||||||||||||  | | ||| ||||| ||||||||||||| ||    
T  5500596 tgatttataataaggtaaaatttagttttagagtgatccacgacagaacactagctgacatgacatcgatagttatactattagctaaacaaaataactt 5500695  T
Q  272 tt 273  Q
    ||    
T  5500696 tt 5500697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 114 - 166
Target Start/End: Original strand, 43579462 - 43579515
Alignment:
Q  114 aaacatagattctcatttatacattaagattgaaattct-cttaatattttgta 166  Q
    ||||||||||||| |||| | || ||||||||||||||| ||||||||||||||    
T  43579462 aaacatagattcttatttgtgcactaagattgaaattctccttaatattttgta 43579515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 96; Significance: 7e-47; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 18 - 298
Target Start/End: Original strand, 2570560 - 2570848
Alignment:
Q  18 catgtcacgtcaaattatatggt-tgttgcacatttgtccataatgtgtgttattatatcgttacttattgcaattgtgtctc--attaaataaaaatta 114  Q
    |||||||||||| |||||||||| | ||| | ||||| | |||| |||||| |||||||| ||| |||||||||||||||| |  ||||||| |||| ||    
T  2570560 catgtcacgtcagattatatggtgtattgtatatttggctataaagtgtgtcattatatctttatttattgcaattgtgtccctaattaaatcaaaagta 2570659  T
Q  115 aacatagattctcatttatacattaagattgaaattctc-ttaatattttgtatgagtactgatttgtaataagataaagtttaattttagagtgatcca 213  Q
    ||||||||||  ||||| | || |||||||||||||| | |||||||||||| |||| | |||||||||||||| ||||||||| |||||||||| ||||    
T  2570660 aacatagatttccatttgtgcactaagattgaaattcaccttaatattttgtttgaggaatgatttgtaataaggtaaagtttagttttagagtggtcca 2570759  T
Q  214 c---cagtacactagctgacatgacatcggcaatcatattattaactaaacaaaataa-tttttaaaaagaatcaattttctgactgca 298  Q
    |   ||| ||||||||| ||||||||||| |||| ||||||||  ||||||| ||||| ||||  |||| ||||| |||||||||||||    
T  2570760 ccagcagaacactagctaacatgacatcgacaattatattattgtctaaacataataacttttctaaaaaaatcagttttctgactgca 2570848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 62 - 256
Target Start/End: Original strand, 2708000 - 2708199
Alignment:
Q  62 gtgtgttattatatcgttacttattgcaattgtgtctc--attaaataaaaattaaacatagattctcatttatacattaagattgaaattctcttaata 159  Q
    |||||| |||||||| |||||||||||||||| ||| |  ||||||| |||||||||||| ||||||||||| | || |||||||||||||| | |  ||    
T  2708000 gtgtgtcattatatctttacttattgcaattgagtccctgattaaatcaaaattaaacatggattctcatttgtgcactaagattgaaattccccttcta 2708099  T
Q  160 ttttgtatgagtactgatttgtaataagataaagtttaattttagagtgatccaccagta---cactagctgacatgacatcggcaatcatattattaac 256  Q
    |||||||||||  ||||||||||||||||||||| ||| |||||||||| |||||||  |   ||||||||||||||| ||||||||| ||| |||||||    
T  2708100 ttttgtatgagggctgatttgtaataagataaagcttagttttagagtggtccaccaacatgacactagctgacatgatatcggcaattatactattaac 2708199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 46 - 273
Target Start/End: Complemental strand, 2266793 - 2266561
Alignment:
Q  46 cacatttgtccataatgtgtgttattatatcgttacttattgcaattgtgtctc--attaaataaaaattaaacatagattctcatttatacattaagat 143  Q
    |||||||||| |||| |||||| |||||||| ||||||||||||| | || ||   ||||||| |||||||||||||||||| ||||| | || ||||||    
T  2266793 cacatttgtctataaggtgtgtcattatatctttacttattgcaactatgactttgattaaatcaaaattaaacatagattcccatttgtgcactaagat 2266694  T
Q  144 tgaaatt-ctcttaatattttgtatgagtactgatttgtaataagataaagtttaattttagagtgatccac---cagtacactagctgacatgacatcg 239  Q
    ||||||| | |||||||||||||||||| |||||||||||||||  |||||||| ||||||||| | |||||   ||| ||||||||||||||| |||||    
T  2266693 tgaaatttcccttaatattttgtatgaggactgatttgtaataatgtaaagttt-attttagaggggtccaccagcaggacactagctgacatggcatcg 2266595  T
Q  240 gcaatcatattattaactaaacaaaataattttt 273  Q
     || | ||| ||||  ||||||||||||| ||||    
T  2266594 acagttatactattggctaaacaaaataactttt 2266561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 18 - 295
Target Start/End: Original strand, 9743670 - 9743954
Alignment:
Q  18 catgtcacgtcaaattatatggt-tgttgcacatttgtccataatgtgtgttattatatcgttacttattgcaattgtgtc--tcattaaataaaaatta 114  Q
    ||||| |||||| |||||||||| | |||||||||| ||||||| |||| | |||| ||| ||||||||||||||| |||   | ||||||| |||||||    
T  9743670 catgtaacgtcatattatatggtgtattgcacatttttccataaagtgtttcattaaatctttacttattgcaattatgttcttgattaaatcaaaatta 9743769  T
Q  115 aacatagat--tctcatttatacattaagattgaaattctc-ttaatattttgtatgagtactgatttgtaataagataaagtttaattttagagtgatc 211  Q
    |||||| ||  |||||||| | || ||||||| |  ||| | ||||||||||||||||| |||| ||||||||||  |||| |||| |||||||||||||    
T  9743770 aacatatatattctcatttgtgcactaagatttatgttccccttaatattttgtatgaggactggtttgtaataatgtaaaatttagttttagagtgatc 9743869  T
Q  212 caccagtacactagctgacatgacatcggcaatcatattattaactaaacaaaataa-tttttaaaaagaatcaattttctgact 295  Q
    |||||| ||||||| | ||||||| | | |||| ||||||||   |||||||||||| ||||| |||| | |||||||| |||||    
T  9743870 caccaggacactagttaacatgacgttgacaattatattattggttaaacaaaataactttttcaaaaaagtcaattttttgact 9743954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 46 - 301
Target Start/End: Original strand, 17612445 - 17612707
Alignment:
Q  46 cacatttgtccataatgtgtgttattatatcgttacttattgcaattgtgtctca--ttaaataaaaattaaacatagattctcatttatacattaagat 143  Q
    |||||||| | |||| |||||| |||  ||| ||||||||||||||| ||||  |  |||||| |||||||||||||||||  ||||| |    ||||||    
T  17612445 cacatttgccaataaggtgtgtcattgcatctttacttattgcaattatgtcctagattaaatcaaaattaaacatagattgccatttgtgtgctaagat 17612544  T
Q  144 tgaaattctc-ttaatattttgtatgagtactgatttgtaataagataaagtttaattttagagtgatccac---cagtacactagctgacatgacatcg 239  Q
    |||||||| | || ||||||| |||||| ||| |||||||||||| |||| |||| |||||||||| |||||   ||| |||||||||||||||||||||    
T  17612545 tgaaattcccctttatattttctatgaggactaatttgtaataaggtaaaatttagttttagagtggtccaccaacaggacactagctgacatgacatcg 17612644  T
Q  240 gcaatcatattattaactaaacaaaataa-tttttaaaaagaatcaattttctgactgcatcg 301  Q
     || | ||| ||||  ||||| ||||||| ||||| |||| ||| ||||||||||||||||||    
T  17612645 acagttatactattggctaaataaaataactttttcaaaaaaatgaattttctgactgcatcg 17612707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 1012378 - 1012596
Alignment:
Q  18 catgtcacgtcaaattatatggt-tgttgcacatttgtccataatgtgtgttattatatcgttacttattgcaa-ttgtgt--ctcattaaataaaaatt 113  Q
    |||||||||||| |||||||||| | ||||||||||| |||||| |||||| |||||||| ||||||||||||| ||||||  || ||||||| ||||||    
T  1012378 catgtcacgtcagattatatggtgtattgcacatttgcccataaggtgtgtcattatatctttacttattgcaatttgtgtccctgattaaatcaaaatt 1012477  T
Q  114 aaacatagattctcatttatacattaagattgaaattctcttaatattttgtatgagtactgatttgtaataagataaagtttaattttagagtgatcca 213  Q
    ||||||||||||  |||| | || ||| |||||||||| | |         |||||  | |||||||||||||| |||| |||| ||||||| || ||||    
T  1012478 aaacatagattcctatttgtgcactaaaattgaaattcccct---------tatgaagattgatttgtaataaggtaaaatttagttttagaatggtcca 1012568  T
Q  214 c---cagtacactagctgacatgacatc 238  Q
    |   ||||||||||||||||||||||||    
T  1012569 ctagcagtacactagctgacatgacatc 1012596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 43 - 151
Target Start/End: Complemental strand, 54995739 - 54995629
Alignment:
Q  43 ttgcacatttgtccataatgtgtgttattatatcgttacttattgcaattgtgt--ctcattaaataaaaattaaacatagattctcatttatacattaa 140  Q
    |||||||||||||||||||||||||  ||||||| |||||||||||||||||||  || ||||||| ||||||||| ||||||||| |||| |  | |||    
T  54995739 ttgcacatttgtccataatgtgtgtctttatatctttacttattgcaattgtgtccctgattaaatcaaaattaaatatagattcttatttgtgtactaa 54995640  T
Q  141 gattgaaattc 151  Q
    |||||||||||    
T  54995639 gattgaaattc 54995629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 116 - 261
Target Start/End: Original strand, 49878858 - 49879006
Alignment:
Q  116 acatagattctcatttatacattaagattgaaatt-ctcttaatattttgtatgagtactgatttgtaataagataaagtttaattttagagtgatccac 214  Q
    ||||| ||| |||||| | |||||||||||||||| | |||||||||||||||||  |||||||| ||||||| ||||||||| | ||||| || |||||    
T  49878858 acataaattttcatttgtgcattaagattgaaatttcccttaatattttgtatgatgactgatttataataaggtaaagtttagtcttagaatggtccac 49878957  T
Q  215 cag--tacactagctgacatgacatcggcaatcatattattaactaaac 261  Q
    |||   ||||||| ||||||||||||  |||| |||| ||| |||||||    
T  49878958 cagcagacactagttgacatgacatcaacaattatatcattgactaaac 49879006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 43 - 119
Target Start/End: Complemental strand, 33036142 - 33036064
Alignment:
Q  43 ttgcacatttgtccataatgtgtgttattatatcgttacttattgcaattgtgtctc--attaaataaaaattaaacat 119  Q
    ||||||||||| | |||| || ||| |||||||| |||||||||||||||| |||||  ||||||| ||||||||||||    
T  33036142 ttgcacatttgcctataaggtttgtcattatatctttacttattgcaattgagtctctgattaaatcaaaattaaacat 33036064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 154 - 208
Target Start/End: Complemental strand, 28292486 - 28292432
Alignment:
Q  154 ttaatattttgtatgagtactgatttgtaataagataaagtttaattttagagtg 208  Q
    |||||||||||||||| || |||||||||||||| ||||||||| | ||||||||    
T  28292486 ttaatattttgtatgattattgatttgtaataaggtaaagtttagtcttagagtg 28292432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 119
Target Start/End: Complemental strand, 17513112 - 17513008
Alignment:
Q  18 catgtcacgtcaaattatatggt-tgttgcacatttgtccataatgtgtgttattatatcgttacttattgcaattgtgtc--tcattaaataaaaatta 114  Q
    |||||| ||||| ||||||| || |||||||||| ||   ||||||||||| |||||||| ||| |||||| ||||| |||  | ||||||| |||||||    
T  17513112 catgtcgcgtcagattatatagtgtgttgcacatctgcatataatgtgtgtcattatatctttatttattgtaattgagtctataattaaatcaaaatta 17513013  T
Q  115 aacat 119  Q
    |||||    
T  17513012 aacat 17513008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 72 - 116
Target Start/End: Original strand, 33255577 - 33255621
Alignment:
Q  72 atatcgttacttattgcaattgtgtctcattaaataaaaattaaa 116  Q
    ||||| ||||||||||||||||||||| ||||||| ||| |||||    
T  33255577 atatctttacttattgcaattgtgtcttattaaatcaaagttaaa 33255621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0200 (Bit Score: 94; Significance: 1e-45; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 18 - 273
Target Start/End: Complemental strand, 24783 - 24522
Alignment:
Q  18 catgtcacgtcaaattatatggt-tgttgcacatttgtccataatgtgtgttattatatcgttacttattgcaattgtgtctc--attaaataaaaatta 114  Q
    |||||||||||| |||||||||| | |||| |||||| |||||| || |||||||||||  ||||||||| |||||||||| |  ||||||| ||||| |    
T  24783 catgtcacgtcagattatatggtgtattgcgcatttgcccataaggtatgttattatatatttacttattccaattgtgtccctgattaaatcaaaat-a 24685  T
Q  115 aacatagattctcatttatacattaagattgaaatt-ctcttaatattttgtatgagtactgatttgtaataagataaagtttaattttagagtgatcca 213  Q
    ||||||||||||||||| | || ||||||||||||| | |||||||||||||| ||  |||||||||||||||| ||||||||| || ||||||||||||    
T  24684 aacatagattctcatttgtgcactaagattgaaatttcccttaatattttgtacgatgactgatttgtaataaggtaaagtttagttctagagtgatcca 24585  T
Q  214 ccagta---cactagctgacatgacatcggcaatcatattattaactaaacaaaataattttt 273  Q
    |||  |   ||||||||||||||||||||||| | ||| ||||  || |||||||||| ||||    
T  24584 ccaacatgacactagctgacatgacatcggcagttatactattggcttaacaaaataactttt 24522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 83; Significance: 4e-39; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 18 - 273
Target Start/End: Original strand, 5672 - 5932
Alignment:
Q  18 catgtcacgtcaaattatatggt-tgttgcacatttgtccataatgtgtgttattatatcgttacttattgcaattgtgtc--tcattaaataaaaatta 114  Q
    ||||||| || | |||||||||| | ||||||||||| | |||| |||||| |||||||  || |||||||||||| ||||  ||||||||| |||||||    
T  5672 catgtcatgttagattatatggtgtattgcacatttgcctataaggtgtgtcattatatatttccttattgcaattatgtccctcattaaatcaaaatta 5771  T
Q  115 aacatagattctcatttatacattaagattgaaattctcttaatattttgtatgagtactgatttgtaataagataaagtttaattttagagtgatccac 214  Q
    ||||| ||||| ||||| | ||||||||| ||||||   ||||||||||||||||| |||||||| ||||||| ||||||||| |||||||||| |||||    
T  5772 aacatggattcgcatttgttcattaagatcgaaatttctttaatattttgtatgagaactgatttataataaggtaaagtttagttttagagtggtccac 5871  T
Q  215 cag--tacactagctgacatgacatcggcaatcatattattaactaaacaaaataattttt 273  Q
     ||   |||||| |||||||||| ||  || | ||| |||||| |||| ||||||||||||    
T  5872 tagcagacactaactgacatgacttccacagttatactattaattaaataaaataattttt 5932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0262 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 158 - 208
Target Start/End: Complemental strand, 11495 - 11445
Alignment:
Q  158 tattttgtatgagtactgatttgtaataagataaagtttaattttagagtg 208  Q
    ||||||||||||| ||||||||||||||||||||| |||| | ||||||||    
T  11495 tattttgtatgaggactgatttgtaataagataaaatttagtcttagagtg 11445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0262; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 43 - 116
Target Start/End: Complemental strand, 12106 - 12031
Alignment:
Q  43 ttgcacatttgtccataatgtgtgttattatatcgttacttattgcaattgtgt--ctcattaaataaaaattaaa 116  Q
    ||||| ||||||||||||  ||||| |||||||  |||||||||||||||||||  || ||||||| |||||||||    
T  12106 ttgcatatttgtccataagatgtgtcattatatatttacttattgcaattgtgttcctgattaaatcaaaattaaa 12031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 154 - 214
Target Start/End: Original strand, 65992 - 66052
Alignment:
Q  154 ttaatattttgtatgagtactgatttgtaataagataaagtttaattttagagtgatccac 214  Q
    ||||||||||||||||| ||| |||| ||||||| ||||||||| | ||| |||| |||||    
T  65992 ttaatattttgtatgaggactaatttataataaggtaaagtttagtgttaaagtggtccac 66052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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