View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17199_low_7 (Length: 475)
Name: NF17199_low_7
Description: NF17199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17199_low_7 |
 | |
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| [»] chr1 (18 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 467; Significance: 0; HSPs: 18)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 1 - 475
Target Start/End: Original strand, 10978942 - 10979416
Alignment:
| Q |
1 |
taattcaaccaagaaccaaaaagagatcaggttggtcccttggaatcactaactgatgtaccatacgaactccatgagtttctattataatcatctccaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10978942 |
taattcaaccaagaaccaaaaagagatcaggttggtcccttggaatcactaactgatgtaccatacgaactccatgagtttctattataatcatctccaa |
10979041 |
T |
|
| Q |
101 |
catcctctactggtggatcttgtagacaaaagtaaggcttattaggaatttgcaagtccccatcttcttcttcaagcatctccaacactttatccattga |
200 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10979042 |
catcctctactggtggatcttgtaaacaaaagtaaggcttattaggaatttgcaagtccccatcttcttcttcaagcatctccaacactttatccattga |
10979141 |
T |
|
| Q |
201 |
aggacggtcgtcgggttttgtctgtatacaccacaaagccacaatcatcattttctttgccaattttatttcctgatctgtgtcattttcaatcgtcact |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
10979142 |
aggacggtcgtcgggttttgtctgtatacaccacaaagccacaatcatcattttctttgccaattttatttcctgatctgtgtcattttcaatcgttact |
10979241 |
T |
|
| Q |
301 |
tcccttccatcatgtaatcgatcatatatccaaaaagggaaataaatttggctagattgctcagccattgcattcaagttcctccttctacttgccatct |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10979242 |
tcccttccatcatgtaatcgatcatatatccaaaaagggaaataaatttggctagattgctcagccattgcattcaagttcctccttctacttgccatct |
10979341 |
T |
|
| Q |
401 |
ccatcaacaacatcccaaaactatatacatcagctttgtaagatattgtgccaacatttctgtagaatagttcag |
475 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10979342 |
ccatcaacaacatcccaaaactatatacatcagctttgtaagatattgtgccaacatttctgtagaatagttcag |
10979416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 475
Target Start/End: Original strand, 10903047 - 10903521
Alignment:
| Q |
1 |
taattcaaccaagaaccaaaaagagatcaggttggtcccttggaatcactaactgatgtaccatacgaactccatgagtttctattataatcatctccaa |
100 |
Q |
| |
|
||||||| ||||||||||||||||||| ||||||||||||||| |||||||| |||||||||||| ||| |||||||||| ||||||| ||||||||||| |
|
|
| T |
10903047 |
taattcagccaagaaccaaaaagagattaggttggtcccttgggatcactaattgatgtaccataggaagtccatgagttgctattattatcatctccaa |
10903146 |
T |
|
| Q |
101 |
catcctctactggtggatcttgtagacaaaagtaaggcttattaggaatttgcaagtccccatcttcttcttcaagcatctccaacactttatccattga |
200 |
Q |
| |
|
| || || ||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| |||||||||||||| |
|
|
| T |
10903147 |
cgtctgctgttggtggatcttgtggacaaaagtaaggcttattaggaatttgtaagtccccatcttctttttcaagcatctccaaaactttatccattga |
10903246 |
T |
|
| Q |
201 |
aggacggtcgtcgggttttgtctgtatacaccacaaagccacaatcatcattttctttgccaattttatttcctgatctgtgtcattttcaatcgtcact |
300 |
Q |
| |
|
|||||| || ||||||||||| |||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| || ||| |
|
|
| T |
10903247 |
aggacgatcctcgggttttgtttgtatacaccacaaagccacggtcatcattttctttgccaatttcatttcctgatctgtgtcattttcaatagttact |
10903346 |
T |
|
| Q |
301 |
tcccttccatcatgtaatcgatcatatatccaaaaagggaaataaatttggctagattgctcagccattgcattcaagttcctccttctacttgccatct |
400 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || |||| ||||||||||||| |||||||||||||||||| |
|
|
| T |
10903347 |
tcccttccatcatgtaatcgatcataaatccaaaaagggaaataaatttggctagattgttcggccaatgcattcaagttcttccttctacttgccatct |
10903446 |
T |
|
| Q |
401 |
ccatcaacaacatcccaaaactatatacatcagctttgtaagatattgtgccaacatttctgtagaatagttcag |
475 |
Q |
| |
|
|||| |||||||||||||| ||||| |||||||||||||||||||| | ||||||||||||||||| ||||||| |
|
|
| T |
10903447 |
ccattaacaacatcccaaagctatagacatcagctttgtaagatatcattccaacatttctgtagaaaagttcag |
10903521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 475
Target Start/End: Original strand, 10914207 - 10914681
Alignment:
| Q |
1 |
taattcaaccaagaaccaaaaagagatcaggttggtcccttggaatcactaactgatgtaccatacgaactccatgagtttctattataatcatctccaa |
100 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||| || |||||||||||||||||| ||| ||||||| || ||| || ||||||||||| |
|
|
| T |
10914207 |
taattcaaccaagaaccagaaagagatcaggttggtcccttgggataactaactgatgtaccataagaagtccatgaattgctacaattatcatctccaa |
10914306 |
T |
|
| Q |
101 |
catcctctactggtggatcttgtagacaaaagtaaggcttattaggaatttgcaagtccccatcttcttcttcaagcatctccaacactttatccattga |
200 |
Q |
| |
|
|||| || ||||||||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||| |
|
|
| T |
10914307 |
catctgctgttggtggatcttgtggacaaaaataaggcttattaggaatttgcaagtctccatcttcttcttcaagcatctccaaaactttttccattga |
10914406 |
T |
|
| Q |
201 |
aggacggtcgtcgggttttgtctgtatacaccacaaagccacaatcatcattttctttgccaattttatttcctgatctgtgtcattttcaatcgtcact |
300 |
Q |
| |
|
|||||| || || |||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| || ||| |
|
|
| T |
10914407 |
aggacgatcctctggttttgtttgtatacaccacaaagctacaatcatcattttctttgccaatttcatttcctgatctgtgtcattttcaatagttact |
10914506 |
T |
|
| Q |
301 |
tcccttccatcatgtaatcgatcatatatccaaaaagggaaataaatttggctagattgctcagccattgcattcaagttcctccttctacttgccatct |
400 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| ||||||| ||||||||| ||| ||||||| |||||||||| |
|
|
| T |
10914507 |
tcccttccatcatgtaatcgatcataaatccaaaaagggaaataaatttcactagattgatcagccaatgcattcaaattcttccttctgcttgccatct |
10914606 |
T |
|
| Q |
401 |
ccatcaacaacatcccaaaactatatacatcagctttgtaagatattgtgccaacatttctgtagaatagttcag |
475 |
Q |
| |
|
|||| |||||||||||||| ||||||||||||||||||| |||||||||||| |||||||| ||||||| ||||| |
|
|
| T |
10914607 |
ccattaacaacatcccaaagctatatacatcagctttgtgagatattgtgccgacatttctatagaataattcag |
10914681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 475
Target Start/End: Original strand, 11010518 - 11010982
Alignment:
| Q |
1 |
taattcaaccaagaaccaaaaagagatcaggttggtcccttggaatcactaactgatgtaccatacgaactccatgagtttctattataatcatctccaa |
100 |
Q |
| |
|
|||||||| | |||||||||| |||||||| |||||||||||||| |||||||||||||||||| ||| |||||||||| ||| | ||| | |
|
|
| T |
11010518 |
taattcaaacgagaaccaaaa-gagatcagtttggtcccttggaaccactaactgatgtaccatcggaagtccatgagttgctactgtaa---------a |
11010607 |
T |
|
| Q |
101 |
catcctctactggtggatcttgtagacaaaagtaaggcttattaggaatttgcaagtccccatcttcttcttcaagcatctccaacactttatccattga |
200 |
Q |
| |
|
||||| ||| ||||| ||||||| ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
11010608 |
catccgctattggtgaatcttgtggacaaaagtaaggcttattaggaatctgcaagtctccatcttcttcttcaagcatctccaaaactttatccattga |
11010707 |
T |
|
| Q |
201 |
aggacggtcgtcgggttttgtctgtatacaccacaaagccacaatcatcattttctttgccaattttatttcctgatctgtgtcattttcaatcgtcact |
300 |
Q |
| |
|
|||||| || || |||||||||||||||||||| || ||||||||||||||||||||||| | || ||||||||||||||||| || ||||| || ||| |
|
|
| T |
11010708 |
aggacgatcatcaggttttgtctgtatacaccataacgccacaatcatcattttctttgctagcttcatttcctgatctgtgtcgttctcaattgttact |
11010807 |
T |
|
| Q |
301 |
tcccttccatcatgtaatcgatcatatatccaaaaagggaaataaatttggctagattgctcagccattgcattcaagttcctccttctacttgccatct |
400 |
Q |
| |
|
|| ||||||||||| ||| |||||| ||||||||||| |||||||||||||| ||||||||||||| ||||||||||||| |||||||||||||||||| |
|
|
| T |
11010808 |
tcacttccatcatgaaatttatcataaatccaaaaaggaaaataaatttggctggattgctcagccaatgcattcaagttcttccttctacttgccatct |
11010907 |
T |
|
| Q |
401 |
ccatcaacaacatcccaaaactatatacatcagctttgtaagatattgtgccaacatttctgtagaatagttcag |
475 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11010908 |
ccatcaacaacatcccaaaactatatacatcagctttgtaagatattgtgccaacatttctgtagaatagttcag |
11010982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 32 - 475
Target Start/End: Complemental strand, 11029070 - 11028625
Alignment:
| Q |
32 |
ttggtcccttggaatcactaactgatgtaccatacgaactccatgagtttctattataatcatctccaacatcctctactggtggatcttgtagacaaaa |
131 |
Q |
| |
|
|||||| ||||| ||| ||||||||||||||||| ||| |||||||||| ||| ||| ||| ||||||||||||||||| |||||||||| ||||||| |
|
|
| T |
11029070 |
ttggtcacttgggatcgctaactgatgtaccataggaagtccatgagttgctactattatcgactccaacatcctctactagtggatcttgcggacaaaa |
11028971 |
T |
|
| Q |
132 |
gtaaggcttattaggaatttgcaagtccccatcttcttcttcaagcatctccaacactttatccattgaaggacggtcgtcgggttttgtctgtatacac |
231 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| || || |||||||| ||||||||| |
|
|
| T |
11028970 |
gtaaggcttattaggaatttgcaagtctccatcttcttcttcaagcatctccaaaactttatccattgaaggacgatcctctggttttgtttgtatacac |
11028871 |
T |
|
| Q |
232 |
cacaaagccacaatcatcattttctttgccaattttatttcctgatctgtgtcattttcaatcg--tcacttcccttccatcatgtaatcgatcatatat |
329 |
Q |
| |
|
||||||||| || |||||||||||||||||||||| |||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| || |
|
|
| T |
11028870 |
cacaaagccgcagtcatcattttctttgccaatttcatttcctgatctgtgtcattttcaatagatatacttcccttccatcatgtaatcgatcataaat |
11028771 |
T |
|
| Q |
330 |
ccaaaaagggaaataaatttggctagattgctcagccattgcattcaagttcctccttctacttgccatctccatcaacaacatcccaaaactatataca |
429 |
Q |
| |
|
||| |||||||||||||||||||||||||| ||||||| ||||||| | ||| |||||||| | || |||||||| |||||||||||||| ||||| ||| |
|
|
| T |
11028770 |
ccagaaagggaaataaatttggctagattgttcagccaatgcattctaattcttccttctattcgcaatctccattaacaacatcccaaagctatagaca |
11028671 |
T |
|
| Q |
430 |
tcagctttgtaagatattgtgccaacatttctgtagaatagttcag |
475 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
11028670 |
tcagctttgtaagatattgtgccaacatttctatagaatagttcag |
11028625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 12 - 475
Target Start/End: Complemental strand, 11005503 - 11005040
Alignment:
| Q |
12 |
agaaccaaaaagagatcaggttggtcccttggaatcactaactgatgtaccatacgaactccatgagtttctattataatcatctccaacatcctctact |
111 |
Q |
| |
|
|||||||| | |||||||||||||| || || ||||| | | ||||||| || | ||| ||| || ||||| ||| | |||||| || |||||| || |
|
|
| T |
11005503 |
agaaccaacacgagatcaggttggttccatgaaatcatttattgatgtatcagaggaagaccaagaacttctagtattaccatctctaaaatcctcagct |
11005404 |
T |
|
| Q |
112 |
ggtggatcttgtagacaaaagtaaggcttattaggaatttgcaagtccccatcttcttcttcaagcatctccaacactttatccattgaaggacggtcgt |
211 |
Q |
| |
|
||| |||||||| || ||| ||||||||||||||| |||||||| |||||||||||||||||||||||||| | ||||||||||||||||||||| || |
|
|
| T |
11005403 |
ggtagatcttgtggataaaggtaaggcttattaggcatttgcaaatccccatcttcttcttcaagcatctcaatcactttatccattgaaggacgatcac |
11005304 |
T |
|
| Q |
212 |
cgggttttgtctgtatacaccacaaagccacaatcatcattttctttgccaattttatttcctgatctgtgtcattttcaatcgtcacttcccttccatc |
311 |
Q |
| |
|
| |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| | |||||||||||| ||||| || ||||| |||||||| |
|
|
| T |
11005303 |
ctggttttgtctgtatacaccataaagccacaatcatcattttctttgccaatttcatttcttcatctgtgtcattctcaattgttacttcacttccatc |
11005204 |
T |
|
| Q |
312 |
atgtaatcgatcatatatccaaaaagggaaataaatttggctagattgctcagccattgcattcaagttcctccttctacttgccatctccatcaacaac |
411 |
Q |
| |
|
|||||| || |||| ||||||||||||||||||||||||| |||||||||||||| || |||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
11005203 |
atgtaactgaccataaatccaaaaagggaaataaatttggcaagattgctcagccaatggattcaagttcttccttctacttgccatctccatcaacaac |
11005104 |
T |
|
| Q |
412 |
atcccaaaactatatacatcagctttgtaagatattgtgccaacatttctgtagaatagttcag |
475 |
Q |
| |
|
|||||||| ||||| ||||||||||||| |||||||||||| |||||||||||||||||||||| |
|
|
| T |
11005103 |
atcccaaagctatagacatcagctttgtgagatattgtgccgacatttctgtagaatagttcag |
11005040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 4 - 283
Target Start/End: Original strand, 10932590 - 10932870
Alignment:
| Q |
4 |
ttcaaccaagaaccaaaaagagatcaggttggtcccttggaatcactaactgatgtaccatacgaactccatgagtttctattataatcatctccaacat |
103 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| ||| |||||||||| ||| || || ||||||||||| |
|
|
| T |
10932590 |
ttcaaccaagaaccaaaaagagattaggttggtcccttgggatcactaactgatgtaccataggaagtccatgagttgctactactattatctccaacat |
10932689 |
T |
|
| Q |
104 |
cctctactggtggatcttgtagacaaaagtaaggcttattaggaatttgcaagtccccatcttcttcttcaagcatctcc-aacactttatccattgaag |
202 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||| |
|
|
| T |
10932690 |
cctctactggtggatcttgtggacaaaagtaaggcttattaggaatttgcaagtccccatcttcttcttcaagcatctcctaaaactttttccattgaag |
10932789 |
T |
|
| Q |
203 |
gacggtcgtcgggttttgtctgtatacaccacaaagccacaatcatcattttctttgccaattttatttcctgatctgtgt |
283 |
Q |
| |
|
|||| || ||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
10932790 |
gacgatcctcgggatttgtttgtatacaccacaaagccacgatcatcattttctttgccaatttcatttcctgatctgtgt |
10932870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 117 - 475
Target Start/End: Original strand, 11032915 - 11033273
Alignment:
| Q |
117 |
atcttgtagacaaaagtaaggcttattaggaatttgcaagtccccatcttcttcttcaagcatctccaacactttatccattgaaggacggtcgtcgggt |
216 |
Q |
| |
|
|||||||| | || ||| |||||||||||| |||||||| || ||||||||||||||||||||||||||||||||||||||| |||||| || ||| |
|
|
| T |
11032915 |
atcttgtacataatagtcaggcttattaggcatttgcaaatcttcatcttcttcttcaagcatctccaacactttatccattggaggacgatcactaggt |
11033014 |
T |
|
| Q |
217 |
tttgtctgtatacaccacaaagccacaatcatcattttctttgccaattttatttcctgatctgtgtcattttcaatcgtcacttcccttccatcatgta |
316 |
Q |
| |
|
|| | ||| ||||||||||||||||| ||||||||||||||||||||||| ||||| |||| ||| ||||| ||| |||| |||||||||||| |||| |
|
|
| T |
11033015 |
ttcgcctgaatacaccacaaagccactatcatcattttctttgccaatttcatttcatgatttgtatcattcagaattgtcatttcccttccatcttgta |
11033114 |
T |
|
| Q |
317 |
atcgatcatatatccaaaaagggaaataaatttggctagattgctcagccattgcattcaagttcctccttctacttgccatctccatcaacaacatccc |
416 |
Q |
| |
|
| ||||||| | |||||||||||||||||| ||||| ||||| ||||||| ||||||||||||| |||||||| ||||||||||||||||||||||||| |
|
|
| T |
11033115 |
actgatcataaacccaaaaagggaaataaatctggcttgattgatcagccaatgcattcaagttcttccttctatttgccatctccatcaacaacatccc |
11033214 |
T |
|
| Q |
417 |
aaaactatatacatcagctttgtaagatattgtgccaacatttctgtagaatagttcag |
475 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| ||||||| |||||||||||||| |
|
|
| T |
11033215 |
aaaactataaacatcagctttgtaagatattgtgccgacatttcggtagaatagttcag |
11033273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 90 - 381
Target Start/End: Complemental strand, 10994109 - 10993818
Alignment:
| Q |
90 |
atcatctccaacatcctctactggtggatcttgtagacaaaagtaaggcttattaggaatttgcaagtccccatcttcttcttcaagcatctccaacact |
189 |
Q |
| |
|
|||||||| |||||| ||| ||||| ||||||| || ||| ||||||||||||||| |||||||| |||||||||||||||||||||||||| | |||| |
|
|
| T |
10994109 |
atcatctctaacatcgtctgctggtatatcttgtggataaaggtaaggcttattaggcatttgcaaatccccatcttcttcttcaagcatctcaatcact |
10994010 |
T |
|
| Q |
190 |
ttatccattgaaggacggtcgtcgggttttgtctgtatacaccacaaagccacaatcatcattttctttgccaattttatttcctgatctgtgtcatttt |
289 |
Q |
| |
|
||||||||||||||||| || ||||||||||| |||||||| || ||||||||||||||||||||||||||||| ||||| | |||||||||||| | |
|
|
| T |
10994009 |
ttatccattgaaggacgatcactaggttttgtctgaatacaccataatgccacaatcatcattttctttgccaatttcatttcttcatctgtgtcattct |
10993910 |
T |
|
| Q |
290 |
caatcgtcacttcccttccatcatgtaatcgatcatatatccaaaaagggaaataaatttggctagattgctcagccattgcattcaagttc |
381 |
Q |
| |
|
|||| || ||||| |||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||| | ||||||||||||| |
|
|
| T |
10993909 |
caattgttacttcacttccatcatgtaactgatcataaatccaaaaaggaaaataaatttggctagattgctcagctaatgcattcaagttc |
10993818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 135 - 475
Target Start/End: Original strand, 11007480 - 11007820
Alignment:
| Q |
135 |
aggcttattaggaatttgcaagtccccatcttcttcttcaagcatctccaacactttatccattgaaggacggtcgtcgggttttgtctgtatacaccac |
234 |
Q |
| |
|
||||| |||||| |||||||| || ||||||||||||||||||||||||||||||||||||||| |||||| || ||||| | || ||||||||| |
|
|
| T |
11007480 |
aggctgattaggcatttgcaaatcttcatcttcttcttcaagcatctccaacactttatccattggaggacgatcactaggtttcgcttgaatacaccac |
11007579 |
T |
|
| Q |
235 |
aaagccacaatcatcattttctttgccaattttatttcctgatctgtgtcattttcaatcgtcacttcccttccatcatgtaatcgatcatatatccaaa |
334 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| || || |||| ||| |||| ||||| || | ||| |||||||| ||||| ||||||| | ||||| |
|
|
| T |
11007580 |
aaagccactatcatcattttctttgccaatttcatctcatgatttgtagcattctcaattgttatttctcttccatcttgtaactgatcataaacccaaa |
11007679 |
T |
|
| Q |
335 |
aagggaaataaatttggctagattgctcagccattgcattcaagttcctccttctacttgccatctccatcaacaacatcccaaaactatatacatcagc |
434 |
Q |
| |
|
|||||||||||| ||||||||||| |||||| | ||| ||||||| |||||||| ||||||||||||| |||||||||||||||||||| |||||||| |
|
|
| T |
11007680 |
aagggaaataaacctggctagattgaccagccaatacatccaagttcttccttctatttgccatctccattaacaacatcccaaaactataaacatcagc |
11007779 |
T |
|
| Q |
435 |
tttgtaagatattgtgccaacatttctgtagaatagttcag |
475 |
Q |
| |
|
|||||||||||| ||||| ||||||| |||||||||||||| |
|
|
| T |
11007780 |
tttgtaagatatcgtgccgacatttcggtagaatagttcag |
11007820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 279 - 475
Target Start/End: Original strand, 10974142 - 10974338
Alignment:
| Q |
279 |
tgtgtcattttcaatcgtcacttcccttccatcatgtaatcgatcatatatccaaaaagggaaataaatttggctagattgctcagccattgcattcaag |
378 |
Q |
| |
|
||||||||||||||| | ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| || |||| ||||||||| |
|
|
| T |
10974142 |
tgtgtcattttcaatagatacttcccttccatcatgtaatcgatcataaatccagaaagggaaataaatttggctagattgatcggccaatgcattcaaa |
10974241 |
T |
|
| Q |
379 |
ttcctccttctacttgccatctccatcaacaacatcccaaaactatatacatcagctttgtaagatattgtgccaacatttctgtagaatagttcag |
475 |
Q |
| |
|
||| |||||||||| ||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||| |||||||||||| ||||||| |
|
|
| T |
10974242 |
ttcttccttctactcgccatctccattaacaacatcccaaagctatagacatcagctttgtaagatattgtgccaatatttctgtagaacagttcag |
10974338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 80 - 293
Target Start/End: Original strand, 10901350 - 10901563
Alignment:
| Q |
80 |
ttctattataatcatctccaacatcctctactggtggatcttgtagacaaaagtaaggcttattaggaatttgcaagtccccatcttcttcttcaagcat |
179 |
Q |
| |
|
||||| ||| |||||||| || |||||| ||||| |||||||| || ||| ||||||||| ||||| |||||||| ||||||||||||| | ||||||| |
|
|
| T |
10901350 |
ttctagtattatcatctcaaaaatcctcagctggtagatcttgtggataaaggtaaggcttcttaggcatttgcaaatccccatcttcttatgcaagcat |
10901449 |
T |
|
| Q |
180 |
ctccaacactttatccattgaaggacggtcgtcgggttttgtctgtatacaccacaaagccacaatcatcattttctttgccaattttatttcctgatct |
279 |
Q |
| |
|
||| | ||||||||||||||||||||| || ||||||||||| ||||||| || |||||||||||| |||||||||||||||| ||||| | |||| |
|
|
| T |
10901450 |
ctcaatcactttatccattgaaggacgatcactaggttttgtctgagtacaccataatgccacaatcatcgttttctttgccaatttcatttcttcatct |
10901549 |
T |
|
| Q |
280 |
gtgtcattttcaat |
293 |
Q |
| |
|
|||||||| ||||| |
|
|
| T |
10901550 |
gtgtcattctcaat |
10901563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 361 - 475
Target Start/End: Original strand, 10901567 - 10901681
Alignment:
| Q |
361 |
tcagccattgcattcaagttcctccttctacttgccatctccatcaacaacatcccaaaactatatacatcagctttgtaagatattgtgccaacatttc |
460 |
Q |
| |
|
||||||| ||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |||||||||||| ||||||| |
|
|
| T |
10901567 |
tcagccaatgcattcaagttcttccttctacttgccatctccatcaacaacattccaaaactatagacatcagctttgtgagatattgtgccgacatttc |
10901666 |
T |
|
| Q |
461 |
tgtagaatagttcag |
475 |
Q |
| |
|
||||||||| ||||| |
|
|
| T |
10901667 |
tgtagaataattcag |
10901681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 320 - 440
Target Start/End: Complemental strand, 9082712 - 9082592
Alignment:
| Q |
320 |
gatcatatatccaaaaagggaaataaatttggctagattgctcagccattgcattcaagttcctccttctacttgccatctccatcaacaacatcccaaa |
419 |
Q |
| |
|
|||||||||||||||| || ||||||| |||||| || ||||| ||| | | |||| ||| |||| | ||||||||||||||||| | ||||||||| |
|
|
| T |
9082712 |
gatcatatatccaaaagggaaaataaagttggcttgaatgctctgccttggtgttcaggtttttcctcttgcttgccatctccatcaaaagcatcccaaa |
9082613 |
T |
|
| Q |
420 |
actatatacatcagctttgta |
440 |
Q |
| |
|
|||||| |||||||| ||||| |
|
|
| T |
9082612 |
actataaacatcagccttgta |
9082592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 320 - 431
Target Start/End: Complemental strand, 9433010 - 9432899
Alignment:
| Q |
320 |
gatcatatatccaaaaagggaaataaatttggctagattgctcagccattgcattcaagttcctccttctacttgccatctccatcaacaacatcccaaa |
419 |
Q |
| |
|
||||||| |||||||| |||||||||| ||| || || |||||||| || |||||| || || ||||||||||| || || ||||| | ||| ||||| |
|
|
| T |
9433010 |
gatcataaatccaaaaggggaaataaagttgacttgaatgctcagcatgtgaattcaaatttcttcttctacttgcgatttcaatcaaaagcattccaaa |
9432911 |
T |
|
| Q |
420 |
actatatacatc |
431 |
Q |
| |
|
|||||| ||||| |
|
|
| T |
9432910 |
actatacacatc |
9432899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 383 - 443
Target Start/End: Original strand, 8999663 - 8999723
Alignment:
| Q |
383 |
tccttctacttgccatctccatcaacaacatcccaaaactatatacatcagctttgtaaga |
443 |
Q |
| |
|
||||| ||| ||||||||||||||| | ||||||||| ||||| |||||||| || ||||| |
|
|
| T |
8999663 |
tccttttacctgccatctccatcaaaagcatcccaaagctataaacatcagccttataaga |
8999723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 393 - 437
Target Start/End: Complemental strand, 9096909 - 9096865
Alignment:
| Q |
393 |
tgccatctccatcaacaacatcccaaaactatatacatcagcttt |
437 |
Q |
| |
|
||||||||||||||| | ||||||||| ||||| ||||||||||| |
|
|
| T |
9096909 |
tgccatctccatcaaaagcatcccaaagctataaacatcagcttt |
9096865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 383 - 443
Target Start/End: Original strand, 9384225 - 9384285
Alignment:
| Q |
383 |
tccttctacttgccatctccatcaacaacatcccaaaactatatacatcagctttgtaaga |
443 |
Q |
| |
|
||||| ||| |||||| |||||||| | ||| ||||| |||||||||||||| |||||||| |
|
|
| T |
9384225 |
tccttttacctgccatttccatcaaaagcattccaaagctatatacatcagccttgtaaga |
9384285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 389 - 445
Target Start/End: Original strand, 9159598 - 9159654
Alignment:
| Q |
389 |
tacttgccatctccatcaacaacatcccaaaactatatacatcagctttgtaagata |
445 |
Q |
| |
|
|||||||||| |||||||| | ||| ||||||||||| |||||||| ||||| |||| |
|
|
| T |
9159598 |
tacttgccatttccatcaaaagcattccaaaactataaacatcagccttgtatgata |
9159654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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