View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17199_low_8 (Length: 448)
Name: NF17199_low_8
Description: NF17199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17199_low_8 |
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| [»] scaffold0155 (4 HSPs) |
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Alignment Details
Target: scaffold0155 (Bit Score: 142; Significance: 2e-74; HSPs: 4)
Name: scaffold0155
Description:
Target: scaffold0155; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 18 - 242
Target Start/End: Complemental strand, 3032 - 2814
Alignment:
| Q |
18 |
ttatcgagagcgtgttttgaagacaatttatctagagcggattggactgtgaaaaacaatagaatataagaggaaatacaatagaaaatcagagggttcc |
117 |
Q |
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| T |
3032 |
ttatcgaaagcgtgttttgaagacaatttatctagagcagattggactgtgaaaaacaa-agaaaatcagaggaaatacaatagaaaatcagagcgttcc |
2934 |
T |
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| Q |
118 |
atgaagaagnnnnnnnnntattgtttatgaatttcactagcatcttgaaattcatcttctactaccatttccacacaattttcacaatttcatttgtaac |
217 |
Q |
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| T |
2933 |
atggaaaa-----aaatatattgtttatgaatttcactagcatcttaaaatttatcttctactaccatttccacacaattttcacaatttcatttgtaac |
2839 |
T |
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| Q |
218 |
acatcttaaccaagtgaaaggcaac |
242 |
Q |
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| T |
2838 |
acatcttaactaagtgaaaggcaac |
2814 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0155; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 149 - 242
Target Start/End: Complemental strand, 4643 - 4548
Alignment:
| Q |
149 |
tttcactagcatcttgaaattcatcttctacta-ccatttccacacaattttcacaat-ttcatttgtaacacatcttaaccaagtgaaaggcaac |
242 |
Q |
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| T |
4643 |
tttcactagactcttgaaattcatcttctactacccatttccacacaatttttaccatcttcatttataacacatcttaactcaatgaaaggcaac |
4548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0155; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 384 - 437
Target Start/End: Complemental strand, 2430 - 2377
Alignment:
| Q |
384 |
aaaagatatatgttcataccaaaataacttaattcaagcctatttatttatttt |
437 |
Q |
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| T |
2430 |
aaaaaatatatgttcataccaaaataacttaatccaaacctatttatttatttt |
2377 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0155; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 325 - 387
Target Start/End: Complemental strand, 2685 - 2623
Alignment:
| Q |
325 |
acacatcttgtcacttatttccattttatctgactcgatatattagcttagttgcgcataaaa |
387 |
Q |
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| T |
2685 |
acacatcttgtcacttattaccatcttatccaactcgatagattagcctagttgcgtataaaa |
2623 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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