View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1719_high_11 (Length: 225)

Name: NF1719_high_11
Description: NF1719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1719_high_11
NF1719_high_11
[»] chr4 (6 HSPs)
chr4 (21-216)||(37241905-37242100)
chr4 (34-127)||(37232850-37232943)
chr4 (34-127)||(37253099-37253192)
chr4 (34-127)||(37245017-37245110)
chr4 (162-198)||(37241890-37241926)
chr4 (142-198)||(37245129-37245185)
[»] scaffold0902 (2 HSPs)
scaffold0902 (52-198)||(3298-3441)
scaffold0902 (139-196)||(3483-3540)
[»] scaffold1652 (2 HSPs)
scaffold1652 (34-198)||(413-571)
scaffold1652 (139-197)||(335-393)
[»] scaffold1801 (1 HSPs)
scaffold1801 (78-198)||(122-239)
[»] chr6 (4 HSPs)
chr6 (78-198)||(14248242-14248359)
chr6 (51-198)||(14254049-14254190)
chr6 (48-198)||(14316777-14316924)
chr6 (33-113)||(14351555-14351635)
[»] scaffold1176 (3 HSPs)
scaffold1176 (78-198)||(238-352)
scaffold1176 (78-194)||(1355-1468)
scaffold1176 (137-199)||(114-176)


Alignment Details
Target: chr4 (Bit Score: 164; Significance: 8e-88; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 21 - 216
Target Start/End: Complemental strand, 37242100 - 37241905
Alignment:
Q  21 ctccctccaccagcgctaactcaccggcagcatcttctcccgtacctataacgagtggtccttctccttcaccgtccgccatcaactctccaccatcgcc 120  Q
    |||||||||||||||||||||||||||  |||||||||||||||||| |||||||  |||||||||||||||||||||||||||||||||||||||| ||    
T  37242100 ctccctccaccagcgctaactcaccggtggcatcttctcccgtacctgtaacgagcagtccttctccttcaccgtccgccatcaactctccaccatctcc 37242001  T
Q  121 tcctcctcacgcctcccctgctgccgctcctgctattactacatcgtcaatctctactcctccaactaaagcaccatcgtcgatctctgctcctcc 216  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  37242000 tcctcctcacgcctcccctgctgccgctcctgctattactccatcgtcaatctctactcctccaactaaagcaccatcgtcgatctctactcctcc 37241905  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 34 - 127
Target Start/End: Complemental strand, 37232943 - 37232850
Alignment:
Q  34 cgctaactcaccggcagcatcttctcccgtacctataacgagtggtccttctccttcaccgtccgccatcaactctccaccatcgcctcctcct 127  Q
    |||| |||||||||| |||||| |||||| |||| | | || |  ||| |||||||| || ||||||||||||||||||||||| |||||||||    
T  37232943 cgctcactcaccggctgcatctcctcccgcacctgtgaagaattctccatctccttcgccatccgccatcaactctccaccatctcctcctcct 37232850  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 34 - 127
Target Start/End: Complemental strand, 37253192 - 37253099
Alignment:
Q  34 cgctaactcaccggcagcatcttctcccgtacctataacgagtggtccttctccttcaccgtccgccatcaactctccaccatcgcctcctcct 127  Q
    |||| |||||||||| |||||| ||||| ||||| | | ||  | ||| ||||||||||| || |||||||||||||||||||| |||||||||    
T  37253192 cgctgactcaccggcggcatctgctcccatacctgtgaagaacgctccatctccttcaccttcagccatcaactctccaccatctcctcctcct 37253099  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 34 - 127
Target Start/End: Complemental strand, 37245110 - 37245017
Alignment:
Q  34 cgctaactcaccggcagcatcttctcccgtacctataacgagtggtccttctccttcaccgtccgccatcaactctccaccatcgcctcctcct 127  Q
    |||||||||| |||| |||||| ||||||| |||   | |||   ||||||||| ||||||||| ||| ||||||||||||||| |||||||||    
T  37245110 cgctaactcaacggcggcatctgctcccgtgcctgcgaagagcattccttctccatcaccgtccaccaacaactctccaccatctcctcctcct 37245017  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 198
Target Start/End: Complemental strand, 37241926 - 37241890
Alignment:
Q  162 catcgtcaatctctactcctccaactaaagcaccatc 198  Q
    ||||||| |||||||||||||||||||||||||||||    
T  37241926 catcgtcgatctctactcctccaactaaagcaccatc 37241890  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 198
Target Start/End: Complemental strand, 37245185 - 37245129
Alignment:
Q  142 tgccgctcctgctattactacatcgtcaatctctactcctccaactaaagcaccatc 198  Q
    ||||||||||||| | ||| ||||||| ||||||||||||||| || ||||||||||    
T  37245185 tgccgctcctgctgtgactccatcgtcgatctctactcctccatctcaagcaccatc 37245129  T

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Target: scaffold0902 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: scaffold0902
Description:

Target: scaffold0902; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 52 - 198
Target Start/End: Complemental strand, 3441 - 3298
Alignment:
Q  52 atcttctcccgtacctataacgagtggtccttctccttcaccgtccgccatcaactctccaccatcgcctcctcctcacgcctcccctgctgccgctcct 151  Q
    |||| ||||||||||| | | |||  ||||||||||||||||||| |||||||||||||||||||   |||||||||| || ||||| || |||||||||    
T  3441 atctgctcccgtacctgtgaagagcagtccttctccttcaccgtctgccatcaactctccaccat---ctcctcctcatgcttccccagcagccgctcct 3345  T
Q  152 gctattactacatcgtcaatctctactcctccaactaaagcaccatc 198  Q
    || |||||| ||||| | |||||||| |||||| |||||||||||||    
T  3344 gccattactccatcggcgatctctacccctccatctaaagcaccatc 3298  T

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Target: scaffold0902; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 196
Target Start/End: Complemental strand, 3540 - 3483
Alignment:
Q  139 tgctgccgctcctgctattactacatcgtcaatctctactcctccaactaaagcacca 196  Q
    ||||||| |||||||| | ||| ||||||| ||||||||||||||| || ||||||||    
T  3540 tgctgccactcctgctgtgactccatcgtcgatctctactcctccatctcaagcacca 3483  T

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Target: scaffold1652 (Bit Score: 58; Significance: 1e-24; HSPs: 2)
Name: scaffold1652
Description:

Target: scaffold1652; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 34 - 198
Target Start/End: Original strand, 413 - 571
Alignment:
Q  34 cgctaactcaccggcagcatcttctcccgtacctataacgagtggtccttctccttcaccgtccgccatcaactctccaccatcgcctcctcctcacgcc 133  Q
    |||||||||| |||  |||||| ||||||||||| | | |||  ||||||||||||||||||| |||||||||||||||||||      ||||||| ||     
T  413 cgctaactcaacggtggcatctgctcccgtacctgtgaagagcagtccttctccttcaccgtctgccatcaactctccaccat------ctcctcaagct 506  T
Q  134 tcccctgctgccgctcctgctattactacatcgtcaatctctactcctccaactaaagcaccatc 198  Q
    ||||| || ||| |||||||||||||| ||||| | |||||||| || ||| |||||||||||||    
T  507 tcccccgcagccactcctgctattactccatcggcgatctctaccccaccatctaaagcaccatc 571  T

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Target: scaffold1652; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 197
Target Start/End: Original strand, 335 - 393
Alignment:
Q  139 tgctgccgctcctgctattactacatcgtcaatctctactcctccaactaaagcaccat 197  Q
    |||||||||||||||| | ||| ||||||| || |||||||||||| || |||||||||    
T  335 tgctgccgctcctgctgtgactccatcgtcgatatctactcctccatctcaagcaccat 393  T

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Target: scaffold1801 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold1801
Description:

Target: scaffold1801; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 78 - 198
Target Start/End: Original strand, 122 - 239
Alignment:
Q  78 gtccttctccttcaccgtccgccatcaactctccaccatcgcctcctcctcacgcctcccctgctgccgctcctgctattactacatcgtcaatctctac 177  Q
    ||||||||||||||||||| |||||||||||||||| ||   |||||||||| || || || || || |||||||| |||||| ||||||| ||||||||    
T  122 gtccttctccttcaccgtctgccatcaactctccacaat---ctcctcctcatgcttcgccagcagctgctcctgccattactccatcgtcgatctctac 218  T
Q  178 tcctccaactaaagcaccatc 198  Q
     |||||| |||||||| ||||    
T  219 ccctccatctaaagcatcatc 239  T

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Target: chr6 (Bit Score: 51; Significance: 2e-20; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 78 - 198
Target Start/End: Complemental strand, 14248359 - 14248242
Alignment:
Q  78 gtccttctccttcaccgtccgccatcaactctccaccatcgcctcctcctcacgcctcccctgctgccgctcctgctattactacatcgtcaatctctac 177  Q
    ||||||||||||||||||| ||||||||||||||| |||   |||||||||| || | ||| || ||| ||||||| |||||| ||||| | ||||||||    
T  14248359 gtccttctccttcaccgtctgccatcaactctccatcat---ctcctcctcaagctttccccgcagccactcctgcaattactccatcggcgatctctac 14248263  T
Q  178 tcctccaactaaagcaccatc 198  Q
     |||||| |||||||||||||    
T  14248262 ccctccatctaaagcaccatc 14248242  T

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Target: chr6; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 51 - 198
Target Start/End: Complemental strand, 14254190 - 14254049
Alignment:
Q  51 catcttctcccgtacctataacgagtggtccttctccttcaccgtccgccatcaactctccaccatcgcctcctcctcacgcctcccctgctgccgctcc 150  Q
    ||||| ||||||||||| | | |||  ||||||||||||||||||| |||||||||||||||||||      ||||||| || || ||||| ||  ||||    
T  14254190 catctgctcccgtacctgtgaagagcagtccttctccttcaccgtctgccatcaactctccaccat------ctcctcaagcttcacctgcagctactcc 14254097  T
Q  151 tgctattactacatcgtcaatctctactcctccaactaaagcaccatc 198  Q
    |||||||||| ||||||| |||||||  |||||| |||||| ||||||    
T  14254096 tgctattactccatcgtcgatctctatccctccatctaaagtaccatc 14254049  T

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Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 48 - 198
Target Start/End: Complemental strand, 14316924 - 14316777
Alignment:
Q  48 cagcatcttctcccgtacctataacgagtggtccttctccttcaccgtccgccatcaactctccaccatcgcctcctcctcacgcctcccctgctgccgc 147  Q
    |||||||| ||||||||||| | | |||  ||||||||  ||||||||| ||||||||||||||| |||   |||||||||| || ||||| || ||| |    
T  14316924 cagcatctgctcccgtacctgtgaagagcagtccttctatttcaccgtctgccatcaactctccatcat---ctcctcctcaagcttcccccgcagccac 14316828  T
Q  148 tcctgctattactacatcgtcaatctctactcctccaactaaagcaccatc 198  Q
    ||| || || ||| |||| || |||||||| |||||  |||||||||||||    
T  14316827 tccggccatcactccatcatcgatctctacccctccttctaaagcaccatc 14316777  T

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Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 33 - 113
Target Start/End: Complemental strand, 14351635 - 14351555
Alignment:
Q  33 gcgctaactcaccggcagcatcttctcccgtacctataacgagtggtccttctccttcaccgtccgccatcaactctccac 113  Q
    |||||||||||||||    |||||||||| ||||| ||| |||| |||||||||||||| | ||| |||||||||||||||    
T  14351635 gcgctaactcaccggtgatatcttctcccatacctgtaaagagtagtccttctccttcatcatccaccatcaactctccac 14351555  T

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Target: scaffold1176 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 3)
Name: scaffold1176
Description:

Target: scaffold1176; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 78 - 198
Target Start/End: Original strand, 238 - 352
Alignment:
Q  78 gtccttctccttcaccgtccgccatcaactctccaccatcgcctcctcctcacgcctcccctgctgccgctcctgctattactacatcgtcaatctctac 177  Q
    |||||||||||||||| || ||||||||||||  ||||||      |||||| || ||||| || ||| | |||||||||||| ||||||| ||||||||    
T  238 gtccttctccttcaccatctgccatcaactctagaccatc------tcctcaagcttcccccgcagccacccctgctattactccatcgtccatctctac 331  T
Q  178 tcctccaactaaagcaccatc 198  Q
     |||||| |||||||||||||    
T  332 ccctccatctaaagcaccatc 352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1176; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 78 - 194
Target Start/End: Original strand, 1355 - 1468
Alignment:
Q  78 gtccttctccttcaccgtccgccatcaactctccaccatcgcctcctcctcacgcctcccctgctgccgctcctgctattactacatcgtcaatctcta- 176  Q
    ||||||||||||||||||  |||||||||| ||||||||   |||||||||| || ||||| ||  | ||||| |||| |||| |||||||||||||||     
T  1355 gtccttctccttcaccgtgtgccatcaactgtccaccat---ctcctcctcatgcttcccccgcaacagctccggctaatact-catcgtcaatctctac 1450  T
Q  177 ctcctccaactaaagcac 194  Q
    | |||||| |||||||||    
T  1451 cccctccatctaaagcac 1468  T

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Target: scaffold1176; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 199
Target Start/End: Original strand, 114 - 176
Alignment:
Q  137 cctgctgccgctcctgctattactacatcgtcaatctctactcctccaactaaagcaccatcg 199  Q
    |||||||| ||||||||| | ||| |||| || ||||||||||||||| || |||||||||||    
T  114 cctgctgctgctcctgctgtgactccatcatcgatctctactcctccatctcaagcaccatcg 176  T

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