View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1719_high_2 (Length: 660)
Name: NF1719_high_2
Description: NF1719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1719_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 88; Significance: 6e-42; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 215 - 337
Target Start/End: Original strand, 37840269 - 37840394
Alignment:
| Q |
215 |
tttcatgtgtaaattatattttcaaata---gttaatattaataatatgaaataattttaaactaaaagtcacatttgagatgaatgaattaaattttag |
311 |
Q |
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| T |
37840269 |
tttcatgtgtaaattatattttcaaatattagttaatattaacaatatgaaaaagttttaaactaaaagtcacatttgagatgaatgaattaaattttag |
37840368 |
T |
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| Q |
312 |
tacaccatgaccataaaccatcacta |
337 |
Q |
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| T |
37840369 |
tataccatgaccatagcccatcacta |
37840394 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 550 - 645
Target Start/End: Original strand, 37840668 - 37840762
Alignment:
| Q |
550 |
agaacaaaacaatctcattcataaaatccaattactttgtggtttctttccttgtaatttcctttattagaagtttcacagaaattcaaagagttt |
645 |
Q |
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| T |
37840668 |
agaacaaaatattgtcattcataaac-cctataactttgtggtctctttccttgtaatttcctttatcagaagtttcacagaaattctaagagttt |
37840762 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 244 - 292
Target Start/End: Original strand, 37853563 - 37853611
Alignment:
| Q |
244 |
ttaatattaataatatgaaataattttaaactaaaagtcacatttgaga |
292 |
Q |
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| T |
37853563 |
ttaatattaataatatgaaataattttaagctgaaaatcacatttgaga |
37853611 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 547 - 642
Target Start/End: Complemental strand, 37507698 - 37507601
Alignment:
| Q |
547 |
catagaacaaaacaatctcattcataaaatccaattactttgtg----gtttctttccttgtaatttcctttattagaagtttcacagaaattcaaagag |
642 |
Q |
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| T |
37507698 |
catagaacaaaagaatctcattcataaactccaatcacttagtggtttgtttctttccttgtattttcc--tatcagatgtttcacaaaaatttaaagag |
37507601 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 56
Target Start/End: Original strand, 37839920 - 37839961
Alignment:
| Q |
15 |
tatttgaccaaatgattaagggattcaaacatctatcattta |
56 |
Q |
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| T |
37839920 |
tatttgaccaaatggttaagggattcaagcatctatcattta |
37839961 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 83 - 123
Target Start/End: Original strand, 37840135 - 37840175
Alignment:
| Q |
83 |
ctaccatttatgacacaccatgatacttgttttataagaac |
123 |
Q |
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| T |
37840135 |
ctaccatttattgcacaccatgattcttgttttataagaac |
37840175 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 510 - 550
Target Start/End: Original strand, 37840581 - 37840621
Alignment:
| Q |
510 |
agtctactgtccaacaacctagtggttggcaacttggcata |
550 |
Q |
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| T |
37840581 |
agtctactgtccaacaacctacacgttggcaacttggcata |
37840621 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 58
Target Start/End: Complemental strand, 3367597 - 3367556
Alignment:
| Q |
17 |
tttgaccaaatgattaagggattcaaacatctatcatttatg |
58 |
Q |
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| T |
3367597 |
tttgaccaaatagttaagggattcaaatatctatcatttatg |
3367556 |
T |
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