View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1719_high_6 (Length: 250)
Name: NF1719_high_6
Description: NF1719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1719_high_6 |
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Alignment Details
Target: chr6 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 9 - 236
Target Start/End: Original strand, 34432237 - 34432467
Alignment:
| Q |
9 |
cttatagaggagaatttttaaaatacaaaaacacgtgtcattaatcatttttactgctttgttaacnnnnnnn---tggtactactgttaaacacttttg |
105 |
Q |
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| T |
34432237 |
cttatagaggagaatttttaaaatacaaaaacacgtgtcattaatcatttttactgctttgttaacaaaaaaaaaatggtactactgttaaacacttttg |
34432336 |
T |
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| Q |
106 |
gaatctatgtattgtaatattttccacnnnnnnntgtattgtaattttgaaaatgttttgcatttttggttaataaaataattaaagtggttaatgaaat |
205 |
Q |
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||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34432337 |
gaatctatgtattgtaatattttcctcaaaaaaatgtattgtaattttgaaaatgttttgcatttttggttaataaaataattaaagtggttaatgaaat |
34432436 |
T |
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| Q |
206 |
ttatattttaaaagtagtaaacaaggtatat |
236 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
34432437 |
ttatattttaaaagtagtaaacaaggtatat |
34432467 |
T |
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