View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1719_low_1 (Length: 918)
Name: NF1719_low_1
Description: NF1719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1719_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 490; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 18 - 666
Target Start/End: Original strand, 3817494 - 3818166
Alignment:
| Q |
18 |
caagaaaatattagaccta-gagtgccatcagtgattacactactgctctaggcatccgtagaagctggattgattctgagaggtgcctatctaagagaa |
116 |
Q |
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||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3817494 |
caagaaaatattagacctaagagtaccatcagtgattacactactgctctaggcatccgtagaagctggattgattctgagaggtgcctatctaagagaa |
3817593 |
T |
|
| Q |
117 |
ttatagtgagacaagacttaactgcatgagccaccggcatgacagacagctctaagcaatttgcctcacccggagatagttgagagtggtgttggtcaat |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3817594 |
ttatagtgagacaagacttaactgcatgagccaccggcatgacagacagctctaagcaatttgcctcacccggagatagttgagagtggtgttggtcaat |
3817693 |
T |
|
| Q |
217 |
tatgagcaatagtaaaaatggtttttaaagaaacaggggaagaacacaacaatggcattctaaaacacaagc-ttttactcatagtttaaatgaggaact |
315 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| |
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| T |
3817694 |
tatgagcaatagtaaaaatggtttttaaggaaacaggggaagaacacaacaatggcattctaaaacacaagctttttactcatagtttaaatgtggaact |
3817793 |
T |
|
| Q |
316 |
taaaaataaaccaatcaactattggaaacagaaaaacgatgctataatatattgattaatgcttcaaaataattagagcatagcaaaatagaatatattg |
415 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3817794 |
taaaaataaaccaatcaactattggaaacagaaacacgatgctataatatattgattaatgcttcaaaataattagagcatagcaaaatagaatatattg |
3817893 |
T |
|
| Q |
416 |
gcacaaaaacgcaacaatgctgtactatacgacaatagttttactcatgtaagtattttaaaataagtagaacataagaaaaagcaaattgagcatcaca |
515 |
Q |
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| T |
3817894 |
gcacaaaaacgcaacaatgctgtactatacgacaatagttttactcatgtaagtattttaaaataagtagaacataagaaaaagcaaattgagcatcaca |
3817993 |
T |
|
| Q |
516 |
acttataattgtgcgtttatacgag-aaaccaaaattccaacttc-agttatcaagtt-ttttgggaaaaatcatca-------------------acga |
593 |
Q |
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|||||| ||||| || ||||||||| ||| |||||||||||||| ||||||||| || |||| ||| ||||||||| || | |
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| T |
3817994 |
acttatcattgttcgattatacgagaaaaaaaaaattccaacttctagttatcaatttgtttttggacaaatcatcagctatggtctatagattggacaa |
3818093 |
T |
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| Q |
594 |
aagaattaaaaagacgacgtttnnnnnnngaaacaggtatggcatctaaattgcaattagagaattactacct |
666 |
Q |
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| T |
3818094 |
aagaattagaaagacgacgtttaaaaaaagaaacaggtatggtatctaaattgcaattagagaattactacct |
3818166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 858 - 918
Target Start/End: Original strand, 3818367 - 3818428
Alignment:
| Q |
858 |
tggttagcaatttcactgactcggccttcatccccttcctca-tttatattttttggcttgt |
918 |
Q |
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| T |
3818367 |
tggttagcaatttcactgactcggccttcatccccttcctcattttatattttttggcttgt |
3818428 |
T |
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