View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1719_low_13 (Length: 203)

Name: NF1719_low_13
Description: NF1719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1719_low_13
NF1719_low_13
[»] chr6 (2 HSPs)
chr6 (17-185)||(22024926-22025094)
chr6 (17-185)||(13049602-13049758)
[»] chr5 (5 HSPs)
chr5 (17-185)||(19681332-19681500)
chr5 (18-185)||(20087288-20087443)
chr5 (18-185)||(30824339-30824494)
chr5 (18-185)||(19422403-19422558)
chr5 (17-185)||(30664366-30664522)
[»] chr3 (1 HSPs)
chr3 (17-185)||(26523835-26524003)
[»] chr2 (4 HSPs)
chr2 (17-185)||(44335034-44335202)
chr2 (18-185)||(37017576-37017731)
chr2 (18-185)||(11747480-11747635)
chr2 (32-183)||(6003837-6003976)
[»] chr4 (3 HSPs)
chr4 (17-185)||(20172039-20172207)
chr4 (17-185)||(10228802-10228958)
chr4 (32-185)||(5057111-5057252)
[»] chr7 (1 HSPs)
chr7 (17-185)||(46486734-46486902)
[»] chr8 (2 HSPs)
chr8 (17-185)||(8591611-8591773)
chr8 (18-185)||(42610272-42610427)
[»] chr1 (1 HSPs)
chr1 (24-185)||(6409436-6409585)


Alignment Details
Target: chr6 (Bit Score: 161; Significance: 5e-86; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 17 - 185
Target Start/End: Complemental strand, 22025094 - 22024926
Alignment:
Q  17 atgatgaagttcaagatgatgaagataatgatgatgaagagctccttgctgcacaaaacggtgatgagaacgaagaagacgaggacgaagatgaagacga 116  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22025094 atgatgaagttcaagatgatgaagatgatgatgatgaagagctccttgctgcacaaaacggtgatgagaacgaagaagacgaggacgaagatgaagacga 22024995  T
Q  117 cgatctgccacaactaccaattttaccaatccgagcttcttacaatccaccaaggtccgtgcgcaacgt 185  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  22024994 cgatctgccacaactaccaattttaccaatccgagcttcttacaatccaccaaggtccatgcgcaacgt 22024926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 17 - 185
Target Start/End: Complemental strand, 13049758 - 13049602
Alignment:
Q  17 atgatgaagttcaagatgatgaagataatgatgatgaagagctccttgctgcacaaaacggtgatgagaacgaagaagacgaggacgaagatgaagacga 116  Q
    ||||||||||| |||||||||||||  ||||||||||||| |||||||| || |||||||||||||||||||||||||||            ||||||||    
T  13049758 atgatgaagttgaagatgatgaagacgatgatgatgaagaactccttgccgctcaaaacggtgatgagaacgaagaagac------------gaagacga 13049671  T
Q  117 cgatc-tgccacaactaccaattttaccaatccgagcttcttacaatccaccaaggtccgtgcgcaacgt 185  Q
    | ||| |||||||||||||||||||||| |||  |||||||||||| |||||||||||| ||||||||||    
T  13049670 c-atcgtgccacaactaccaattttaccgatcaaagcttcttacaacccaccaaggtccatgcgcaacgt 13049602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 161; Significance: 5e-86; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 17 - 185
Target Start/End: Complemental strand, 19681500 - 19681332
Alignment:
Q  17 atgatgaagttcaagatgatgaagataatgatgatgaagagctccttgctgcacaaaacggtgatgagaacgaagaagacgaggacgaagatgaagacga 116  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19681500 atgatgaagttcaagatgatgaagatgatgatgatgaagagctccttgctgcacaaaacggtgatgagaacgaagaagacgaggacgaagatgaagacga 19681401  T
Q  117 cgatctgccacaactaccaattttaccaatccgagcttcttacaatccaccaaggtccgtgcgcaacgt 185  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  19681400 cgatctgccacaactaccaattttaccaatccgagcttcttacaatccaccaaggtccatgcgcaacgt 19681332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 18 - 185
Target Start/End: Complemental strand, 20087443 - 20087288
Alignment:
Q  18 tgatgaagttcaagatgatgaagataatgatgatgaagagctccttgctgcacaaaacggtgatgagaacgaagaagacgaggacgaagatgaagacgac 117  Q
    |||||||||||||||||||||||| |||||||||||||| |||||||| |||||||||||||| |||||||||||||||         ||||||   |||    
T  20087443 tgatgaagttcaagatgatgaagacaatgatgatgaagaactccttgccgcacaaaacggtgacgagaacgaagaagac---------gatgaa---gac 20087356  T
Q  118 gatctgccacaactaccaattttaccaatccgagcttcttacaatccaccaaggtccgtgcgcaacgt 185  Q
    |||||||||||||||||||||||||||||  ||||||||||||| |||||||||||| ||||||||||    
T  20087355 gatctgccacaactaccaattttaccaattagagcttcttacaacccaccaaggtccatgcgcaacgt 20087288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 18 - 185
Target Start/End: Original strand, 30824339 - 30824494
Alignment:
Q  18 tgatgaagttcaagatgatgaagataatgatgatgaagagctccttgctgcacaaaacggtgatgagaacgaagaagacgaggacgaagatgaagacgac 117  Q
    |||||||||||||||||||||||| |||||||||||||| |||||||| |||||||||||||| |||||||||||||||         ||||||   |||    
T  30824339 tgatgaagttcaagatgatgaagacaatgatgatgaagaactccttgccgcacaaaacggtgacgagaacgaagaagac---------gatgaa---gac 30824426  T
Q  118 gatctgccacaactaccaattttaccaatccgagcttcttacaatccaccaaggtccgtgcgcaacgt 185  Q
    |||||||||||||||||||||||||||||  ||||||||||||| |||||||||||| ||||||||||    
T  30824427 gatctgccacaactaccaattttaccaattagagcttcttacaacccaccaaggtccatgcgcaacgt 30824494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 18 - 185
Target Start/End: Complemental strand, 19422558 - 19422403
Alignment:
Q  18 tgatgaagttcaagatgatgaagataatgatgatgaagagctccttgctgcacaaaacggtgatgagaacgaagaagacgaggacgaagatgaagacgac 117  Q
    |||||||||||||||||||||||| |||||||||||||| |||||||| |||||||||||||| |||||||||||||||            || || |||    
T  19422558 tgatgaagttcaagatgatgaagacaatgatgatgaagaactccttgccgcacaaaacggtgacgagaacgaagaagac------------gatgatgac 19422471  T
Q  118 gatctgccacaactaccaattttaccaatccgagcttcttacaatccaccaaggtccgtgcgcaacgt 185  Q
    |||||||||||||||||||||||||||||  ||||||||||||| |||||||||||| ||||||||||    
T  19422470 gatctgccacaactaccaattttaccaattagagcttcttacaacccaccaaggtccatgcgcaacgt 19422403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 17 - 185
Target Start/End: Complemental strand, 30664522 - 30664366
Alignment:
Q  17 atgatgaagttcaagatgatgaagataatgatgatgaagagctccttgctgcacaaaacggtgatgagaacgaagaagacgaggacgaagatgaagacga 116  Q
    |||||||||||||||||||||| ||  ||||||||||||| |||||||||||||||| ||||||||||||||||||||||            ||||| ||    
T  30664522 atgatgaagttcaagatgatgatgacgatgatgatgaagaactccttgctgcacaaagcggtgatgagaacgaagaagac------------gaagaaga 30664435  T
Q  117 cgatctgccacaactaccaattttaccaatccgagcttcttacaatccaccaaggtccgtgcgcaacgt 185  Q
    |  | |||||||||||||||||| ||| ||| ||||||||||||| |||||||||||  ||||||||||    
T  30664434 cattgtgccacaactaccaatttcaccgatcagagcttcttacaacccaccaaggtctatgcgcaacgt 30664366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 17 - 185
Target Start/End: Complemental strand, 26524003 - 26523835
Alignment:
Q  17 atgatgaagttcaagatgatgaagataatgatgatgaagagctccttgctgcacaaaacggtgatgagaacgaagaagacgaggacgaagatgaagacga 116  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26524003 atgatgaagttcaagatgatgaagatgatgatgatgaagagctccttgctgcacaaaacggtgatgagaacgaagaagacgaggacgaagatgaagacga 26523904  T
Q  117 cgatctgccacaactaccaattttaccaatccgagcttcttacaatccaccaaggtccgtgcgcaacgt 185  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  26523903 cgatctgccacaactaccaattttaccaatccgagcttcttacaatccaccaaggtccatgcgcaacgt 26523835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 161; Significance: 5e-86; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 17 - 185
Target Start/End: Complemental strand, 44335202 - 44335034
Alignment:
Q  17 atgatgaagttcaagatgatgaagataatgatgatgaagagctccttgctgcacaaaacggtgatgagaacgaagaagacgaggacgaagatgaagacga 116  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44335202 atgatgaagttcaagatgatgaagatgatgatgatgaagagctccttgctgcacaaaacggtgatgagaacgaagaagacgaggacgaagatgaagacga 44335103  T
Q  117 cgatctgccacaactaccaattttaccaatccgagcttcttacaatccaccaaggtccgtgcgcaacgt 185  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  44335102 cgatctgccacaactaccaattttaccaatccgagcttcttacaatccaccaaggtccatgcgcaacgt 44335034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 18 - 185
Target Start/End: Original strand, 37017576 - 37017731
Alignment:
Q  18 tgatgaagttcaagatgatgaagataatgatgatgaagagctccttgctgcacaaaacggtgatgagaacgaagaagacgaggacgaagatgaagacgac 117  Q
    |||||||||||||||||||||||| |||||||||||||| |||||||| |||||||||||||| |||||||||||||||         ||||||   |||    
T  37017576 tgatgaagttcaagatgatgaagacaatgatgatgaagaactccttgccgcacaaaacggtgacgagaacgaagaagac---------gatgaa---gac 37017663  T
Q  118 gatctgccacaactaccaattttaccaatccgagcttcttacaatccaccaaggtccgtgcgcaacgt 185  Q
    |||||||||||||||||||||||||||||  ||||||||||||| |||||||||||| ||||||||||    
T  37017664 gatctgccacaactaccaattttaccaattagagcttcttacaacccaccaaggtccatgcgcaacgt 37017731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 18 - 185
Target Start/End: Complemental strand, 11747635 - 11747480
Alignment:
Q  18 tgatgaagttcaagatgatgaagataatgatgatgaagagctccttgctgcacaaaacggtgatgagaacgaagaagacgaggacgaagatgaagacgac 117  Q
    |||||||||||||||||||||||| |||||||||||||| |||||||| |||||||||||||| |||||||||||||||            || || |||    
T  11747635 tgatgaagttcaagatgatgaagacaatgatgatgaagaactccttgccgcacaaaacggtgacgagaacgaagaagac------------gatgatgac 11747548  T
Q  118 gatctgccacaactaccaattttaccaatccgagcttcttacaatccaccaaggtccgtgcgcaacgt 185  Q
    |||||||||||||||||||||||||||||  ||||||||||||| |||||||||||| ||||||||||    
T  11747547 gatctgccacaactaccaattttaccaattagagcttcttacaacccaccaaggtccatgcgcaacgt 11747480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 32 - 183
Target Start/End: Original strand, 6003837 - 6003976
Alignment:
Q  32 atgatgaagataatgatgatgaagagctccttgctgcacaaaacggtgatgagaacgaagaagacgaggacgaagatgaagacgacgatctgccacaact 131  Q
    ||||||||||  ||||||||||||| |||||||||||||||||||||||||||||||||||||||            |||||||||  | ||||||||||    
T  6003837 atgatgaagacgatgatgatgaagaactccttgctgcacaaaacggtgatgagaacgaagaagac------------gaagacgacattgtgccacaact 6003924  T
Q  132 accaattttaccaatccgagcttcttacaatccaccaaggtccgtgcgcaac 183  Q
    |||||||| ||| ||| ||||||||||||| |||||||||||  ||||||||    
T  6003925 accaatttcaccgatcagagcttcttacaacccaccaaggtctatgcgcaac 6003976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 157; Significance: 1e-83; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 17 - 185
Target Start/End: Original strand, 20172039 - 20172207
Alignment:
Q  17 atgatgaagttcaagatgatgaagataatgatgatgaagagctccttgctgcacaaaacggtgatgagaacgaagaagacgaggacgaagatgaagacga 116  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  20172039 atgatgaagttcaagatgatgaagatgatgatgatgaagagctccttgctgcacaaaacggtgatgagaacgaagaagacgaggacgaagatgaagaaga 20172138  T
Q  117 cgatctgccacaactaccaattttaccaatccgagcttcttacaatccaccaaggtccgtgcgcaacgt 185  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  20172139 cgatctgccacaactaccaattttaccaatccgagcttcttacaatccaccaaggtccatgcgcaacgt 20172207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 17 - 185
Target Start/End: Original strand, 10228802 - 10228958
Alignment:
Q  17 atgatgaagttcaagatgatgaagataatgatgatgaagagctccttgctgcacaaaacggtgatgagaacgaagaagacgaggacgaagatgaagacga 116  Q
    |||||||||||||||||||||||||  ||||||||||||| |||||||| |||||||||||||| |||||||||||||||            ||||||||    
T  10228802 atgatgaagttcaagatgatgaagacgatgatgatgaagaactccttgccgcacaaaacggtgacgagaacgaagaagac------------gaagacga 10228889  T
Q  117 cgatctgccacaactaccaattttaccaatccgagcttcttacaatccaccaaggtccgtgcgcaacgt 185  Q
    ||||||||||| ||||||||||||||||||| ||||||||||||| |||||||||||| ||||||||||    
T  10228890 cgatctgccactactaccaattttaccaatcagagcttcttacaacccaccaaggtccatgcgcaacgt 10228958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 32 - 185
Target Start/End: Original strand, 5057111 - 5057252
Alignment:
Q  32 atgatgaagataatgatgatgaagagctccttgctgcacaaaacggtgatgagaacgaagaagacgaggacgaagatgaagacgacgatctgccacaact 131  Q
    ||||||||| | | ||||||||||| |||||||| ||||||||||||||||||||||||||| |            ||||||||||||||||||||||||    
T  5057111 atgatgaagttcaagatgatgaagaactccttgccgcacaaaacggtgatgagaacgaagaata------------tgaagacgacgatctgccacaact 5057198  T
Q  132 accaattttaccaatccgagcttcttacaatccaccaaggtccgtgcgcaacgt 185  Q
    ||||||||||||||||  ||||||||||||||||||||||||| ||||||||||    
T  5057199 accaattttaccaatcaaagcttcttacaatccaccaaggtccatgcgcaacgt 5057252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 17 - 185
Target Start/End: Complemental strand, 46486902 - 46486734
Alignment:
Q  17 atgatgaagttcaagatgatgaagataatgatgatgaagagctccttgctgcacaaaacggtgatgagaacgaagaagacgaggacgaagatgaagacga 116  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||    
T  46486902 atgatgaagttcaagatgatgaagatgatgatgatgaagagctccttgctgcacaaaacggtgatgagaacgaagaagacgagcacgaagatgtagacga 46486803  T
Q  117 cgatctgccacaactaccaattttaccaatccgagcttcttacaatccaccaaggtccgtgcgcaacgt 185  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  46486802 cgatctgccacaactaccaattttaccaatccgagcttcttacaatccaccaaggtccatgcgcaacgt 46486734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 134; Significance: 6e-70; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 17 - 185
Target Start/End: Complemental strand, 8591773 - 8591611
Alignment:
Q  17 atgatgaagttcaagatgatgaagataatgatgatgaagagctccttgctgcacaaaacggtgatgagaacgaagaagacgaggacgaagatgaagacga 116  Q
    ||||||||||||||||||||||||||      |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  8591773 atgatgaagttcaagatgatgaagat------gatgaagagctccttgctgcacaaaacggtgatgagaacgaagaagacgatgacgaagatgaagacga 8591680  T
Q  117 cgatctgccacaactaccaattttaccaatccgagcttcttacaatccaccaaggtccgtgcgcaacgt 185  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  8591679 tgatctgccacaactaccaattttaccaatccgagcttcttacaatccaccaaggtccatgcgcaacgt 8591611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 18 - 185
Target Start/End: Complemental strand, 42610427 - 42610272
Alignment:
Q  18 tgatgaagttcaagatgatgaagataatgatgatgaagagctccttgctgcacaaaacggtgatgagaacgaagaagacgaggacgaagatgaagacgac 117  Q
    |||||||||||||||||||||||| ||||| |||||||| |||||||| |||||||||||||| |||||||||||||||            || || |||    
T  42610427 tgatgaagttcaagatgatgaagacaatgacgatgaagaactccttgccgcacaaaacggtgacgagaacgaagaagac------------gatgatgac 42610340  T
Q  118 gatctgccacaactaccaattttaccaatccgagcttcttacaatccaccaaggtccgtgcgcaacgt 185  Q
    |||||||||||||||||||||||||||||  ||||||||||||| |||||||||||| ||||||||||    
T  42610339 gatctgccacaactaccaattttaccaattagagcttcttacaacccaccaaggtccatgcgcaacgt 42610272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 81; Significance: 2e-38; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 81; E-Value: 2e-38
Query Start/End: Original strand, 24 - 185
Target Start/End: Original strand, 6409436 - 6409585
Alignment:
Q  24 agttcaagatgatgaagataatgatgatgaagagctccttgctgcacaaaacggtgatgagaacgaagaagacgaggacgaagatgaagacgacgatctg 123  Q
    |||||||||||||||||| |||||||||||||| |||||||| |||||||||||||| |||||||||||||||            || || |||||||||    
T  6409436 agttcaagatgatgaagacaatgatgatgaagaactccttgccgcacaaaacggtgacgagaacgaagaagac------------gatgatgacgatctg 6409523  T
Q  124 ccacaactaccaattttaccaatccgagcttcttacaatccaccaaggtccgtgcgcaacgt 185  Q
    |||||||||||||||||||||||  ||||||||||||| |||||||||||| ||||||||||    
T  6409524 ccacaactaccaattttaccaattagagcttcttacaacccaccaaggtccatgcgcaacgt 6409585  T

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