View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1719_low_8 (Length: 239)
Name: NF1719_low_8
Description: NF1719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1719_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 35667523 - 35667745
Alignment:
| Q |
1 |
tgcttatgctctccttataaatagaggatacaattgtacgagcttatagaaccgatcatgttcaagcaaagagtcgtgcatttttctctctcttaaaaat |
100 |
Q |
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| T |
35667523 |
tgcttatgctctccttataaatagaggatacaattgtacgagcttatagaaccgatcatgttcaagcaaagagtcgtgcatttttctctctcttaaaaat |
35667622 |
T |
|
| Q |
101 |
caaactaaaacacacaatttttcttacagatcaggatcgttgctcactattttgatattcaaatgtaaaatgtttttggtctaaattttgtatcaaatac |
200 |
Q |
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| T |
35667623 |
caaactaaaacccacaatttttcttacagatcaggatcgttactcactattttgatattcaaatgtaaaatatttttgttctaaattttgtatcaaatac |
35667722 |
T |
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| Q |
201 |
attagactttatagaaaaataat |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
35667723 |
attagactttatagaaaaataat |
35667745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 210
Target Start/End: Original strand, 32052391 - 32052439
Alignment:
| Q |
161 |
aaatgtaaaatgtttttggtctaaattttgtatcaaatacattagacttt |
210 |
Q |
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| T |
32052391 |
aaatgtaaaatgtatttggtctaaatttag-atcaaatacatttgacttt |
32052439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 209
Target Start/End: Complemental strand, 33653259 - 33653218
Alignment:
| Q |
168 |
aaatgtttttggtctaaattttgtatcaaatacattagactt |
209 |
Q |
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|||||| |||||||||||||||| | |||||||||||||||| |
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| T |
33653259 |
aaatgtgtttggtctaaattttggaccaaatacattagactt |
33653218 |
T |
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