View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1720-Insertion-1 (Length: 461)
Name: NF1720-Insertion-1
Description: NF1720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1720-Insertion-1 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 422; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 8 - 461
Target Start/End: Original strand, 38122326 - 38122780
Alignment:
| Q |
8 |
taatattgcatccttcaactgaaatgttgttaagaaaaattgacatatgatataacatacaaccgaatgagatttcataagataagtttcacagatgatt |
107 |
Q |
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| T |
38122326 |
taatattgcatccttcaactgaaatgttgttaagaaaaattgacatatgatataacatacaaccgaatgagatttcataagataagtttcacagatgatt |
38122425 |
T |
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| Q |
108 |
caaattgaaacaaaa-tcattcattatgtcatcaagcccataaaactttaaaataatttgaaattgctttaccctatcaataaatcttcagactaacgta |
206 |
Q |
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| T |
38122426 |
caaattgaaacaaaaatcattcattatgtcatcaagcccataaaactttaaaataatttgaaattgctttaccctatcaataaatcttgagactaacgta |
38122525 |
T |
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| Q |
207 |
caaaattacatagttttaacatacattcaataatcaaagtttcaaaaggaccacatgcatattctacaagacaatggtttaagagcatgaagtcnnnnnn |
306 |
Q |
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| T |
38122526 |
caaaattacatagttttaacatacattcaataatcaaagtttcaaaaggaccacatgcatattctacaagacaatggtttaagagcatgaagtcaaaaaa |
38122625 |
T |
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| Q |
307 |
ngagtcaattgagtcaacatagtaagataatgtttatctgatatctatgtcccaccaccaataaaactcaaccatatctcctaaaataaaacaaacgaaa |
406 |
Q |
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| T |
38122626 |
agagtcaattgagtcaacatagtaagataatgtttatctgatatctatgtcccaccaccaataaaactcaaccatatctcctaaaataaaacaaacgaaa |
38122725 |
T |
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| Q |
407 |
ccacacaaagatcattgattaaagccggtgcttattcttctaaactgttactcta |
461 |
Q |
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| T |
38122726 |
ccacacaaagatcattgattaaagccggtgcttattcttctaaactgttactcta |
38122780 |
T |
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