View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1720-Insertion-10 (Length: 585)
Name: NF1720-Insertion-10
Description: NF1720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1720-Insertion-10 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 481; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 11 - 585
Target Start/End: Original strand, 27888160 - 27888737
Alignment:
| Q |
11 |
tgatgatactcttctccttcccatatccacttggatataccaacgagcctataagaaaaactccacgacaaatcacattgtctttagtcgt---aatttt |
107 |
Q |
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| T |
27888160 |
tgatgatactcttctccttcccatatccacttggatataccaacggacctataagaaaaactccacgacaaatcacattgtctttagtcgtcgtaatttt |
27888259 |
T |
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| Q |
108 |
cccattcaacaatctctatgtgnnnnnnnnngactttaagaggcaccatttattgcaaataatatttgttaaaggtgcacgaacttgttgctcgtcatga |
207 |
Q |
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| T |
27888260 |
cccattcaacaatctctatgtgaaaaaaaagacttttaagaggcaccatttattgcaaatgatatttgttaaaggtgcacgaacttgttgctcgtcatga |
27888359 |
T |
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| Q |
208 |
gtcaataaatgatttactcattttattagataaccttcatgtggatcgtgtttccaaatccatgtgatcgctatattatcctgcaaaagaatattgtcca |
307 |
Q |
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| T |
27888360 |
gtcaataaatgatttactccttttattagataaccttcatgtggatcgtgtttccaaatccatgtaatcgctatattatcctgcaaaagaatattgtcca |
27888459 |
T |
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| Q |
308 |
acaaagagcaacactcaactacttgctcctctttcaaagtaaaaagcctctttctccaccttcaagtataaacctcaacccccaacctaactccccatct |
407 |
Q |
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| T |
27888460 |
gcaaagagcaacactcaactacttactcctctttcaaagtaaaaagcctctttctccaccttcaagtataaacctcaacccccaacctaactccccatct |
27888559 |
T |
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| Q |
408 |
catctactgaaatattactattaagataatggctaaaaagaaaactaaatataaaattccttcttctagacaaggattgtttcaaaaggaagaaatctca |
507 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| ||| |
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| T |
27888560 |
catctactgaaatattactattaagataatggctaaaaagaaaactaaatataaaattccttcttctgggcaaggattgtttcaaaaggaagaaatttca |
27888659 |
T |
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| Q |
508 |
tcattgccaattctacgcgccaaactttcctcaaaccaaccttctttgctcacatgaacgtcttttctacccacataa |
585 |
Q |
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| T |
27888660 |
tcattgccaattctacgcgccaaactttcctcaaaccaacctcctttgctcacatgaacgtcttttctacccacataa |
27888737 |
T |
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