View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1720-Insertion-2 (Length: 390)
Name: NF1720-Insertion-2
Description: NF1720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1720-Insertion-2 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 142 - 390
Target Start/End: Complemental strand, 14813611 - 14813363
Alignment:
| Q |
142 |
taattgtatgtaatgtttgatagtagatgctgcaattggaacagaattgaggaagaaaagtggttaactgtcacagtatcacagcgttacgtacgtacta |
241 |
Q |
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| T |
14813611 |
taattgtatgtaatgtttgatagtagatgctgcaattggaacagaattgaggaagaaaagtggttaactgtcacagtatcacagcgttacgtacgtacta |
14813512 |
T |
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| Q |
242 |
ctgtgtttaattttgaatggcatatctcgtgtcccaagtgggccaagaagaagatatagttaagattttttatatttgaattctataggaattgactaat |
341 |
Q |
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| T |
14813511 |
ctgtgtttaattttgaatggcatatctcgtgtcccaagtgggccaagaagaagatatagttaagattttttatatttgaattctagaggaattgactaat |
14813412 |
T |
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| Q |
342 |
tcagcgccaactctgaaacacattatcacttgttttgatcaaccagtca |
390 |
Q |
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| T |
14813411 |
tcagcgccaactctgaaacacattatcacatgttttgatcaaccagtca |
14813363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 8 - 125
Target Start/End: Complemental strand, 14813711 - 14813594
Alignment:
| Q |
8 |
acaccgcctcatcaagacattcaatagtcattacttattgtgcccatcagcatcttatcttataataatcatatactgtattaatcaatgtttatcacaa |
107 |
Q |
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| T |
14813711 |
acaccgcctcatcaagacattcaatagtcattacttattgtgcccatcagcatcttatcttataataatcatatactgtattaatcaatgtttatcacaa |
14813612 |
T |
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| Q |
108 |
taattgtatgtaatgttt |
125 |
Q |
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| T |
14813611 |
taattgtatgtaatgttt |
14813594 |
T |
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