View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1720-Insertion-3 (Length: 304)
Name: NF1720-Insertion-3
Description: NF1720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1720-Insertion-3 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 8 - 304
Target Start/End: Original strand, 23409218 - 23409502
Alignment:
| Q |
8 |
tttccattgagccaacttgaccttgattctagccttagtatttccttgaaacaaaattaccgtcatataggtgaaaggcaaagccccaagggaaaatcct |
107 |
Q |
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| T |
23409218 |
tttccattgagccaacttgaccttgattctagccttagtatttccttgaaacaaagttaccgccatataggtgaaaggcaaagccccaagggaaaatcct |
23409317 |
T |
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| Q |
108 |
attgcaactgctatcgcattcctttataaagtataccgtttaccttaacgtttaccttaactttcaactatttttcggaattgattgccatctaagtcaa |
207 |
Q |
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| T |
23409318 |
attgcaactgctatcgcattcctttataaagtata------------acgtttaccttaactttcaactattttttggaattgattgccatctaagtcaa |
23409405 |
T |
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| Q |
208 |
atttatttcgtagaggaattattccttgtgaggctcagttgtgtgttagtggttgtggttaacaggaattggagaatcatttatttgtgtcatgtaa |
304 |
Q |
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| T |
23409406 |
atttatttcgtagaggaattattccttatgaggctcagttgtgtgttagtggttgtggttaacaggaatcggagaatcatttatttgtgtcatgtaa |
23409502 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 178 - 265
Target Start/End: Complemental strand, 30406572 - 30406485
Alignment:
| Q |
178 |
tttttcggaattgattgccatctaagtcaaatttatttcgtagaggaattattccttgtgaggctcagttgtgtgttagtggttgtgg |
265 |
Q |
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| T |
30406572 |
tttttcggaatagattgccaactaaggagaatttatttcgaagagggattattccacatgaggctcagttgtgtgttagtggttgtgg |
30406485 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 178 - 293
Target Start/End: Original strand, 27544695 - 27544810
Alignment:
| Q |
178 |
tttttcggaattgattgccatctaagtcaaatttatttcgtagaggaattattccttgtgaggctcagttgtgtgttagtggttgtggttaacaggaatt |
277 |
Q |
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| T |
27544695 |
tttttcagaatagattgtcaactaatgcgaatttatttcgaagagggattattccacatggctctcagttgtgtgttagtggttgtggtccacagaaacc |
27544794 |
T |
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| Q |
278 |
ggagaatcatttattt |
293 |
Q |
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| T |
27544795 |
agagaatcatttattt |
27544810 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 289
Target Start/End: Original strand, 4372589 - 4372653
Alignment:
| Q |
225 |
attattccttgtgaggctcagttgtgtgttagtggttgtggttaacaggaattggagaatcattt |
289 |
Q |
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| T |
4372589 |
attattccttctgaggctcaactgtgtgttagtggttgcggtcaataggagtcggagactcattt |
4372653 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 275
Target Start/End: Original strand, 7320381 - 7320449
Alignment:
| Q |
207 |
aatttatttcgtagaggaattattccttgtgaggctcagttgtgtgttagtggttgtggttaacaggaa |
275 |
Q |
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| T |
7320381 |
aatttatttcggagaggtattatttctcatgaagcgcaattttgtgttagtggttgtggtttacaggaa |
7320449 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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