View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1720-Insertion-4 (Length: 317)

Name: NF1720-Insertion-4
Description: NF1720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1720-Insertion-4
NF1720-Insertion-4
[»] chr2 (1 HSPs)
chr2 (7-317)||(41403295-41403595)


Alignment Details
Target: chr2 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 7 - 317
Target Start/End: Complemental strand, 41403595 - 41403295
Alignment:
Q  7 aattacctccaaaacatcatcattgtttttgaatttaattgaaatgtctctgttaagggaaccttgatccgttgttgtcttgacatctttcttctgatga 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||    
T  41403595 aattacctccaaaacatcatcattgtttttgaatttaattgaaatgtctctgttaagggaaccttgatctgttgttgtattgacatctttcttctgatga 41403496  T
Q  107 agtccattcccactactagcctgacctttagcatttgatatttctctatgttgacttacctgatatttatattttatatttgattcaaccacaattatta 206  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  41403495 agtgcattcccactactagcctgacctttagcatttgatatttctctatgttgacttacctgatatttatattttatattagattcaaccacaattatta 41403396  T
Q  207 tatacaatacaataattctaaataattcttttatttatttgttggtgtgaccataaaatataatcatgaatctttaaacatacctttagggattctgcat 306  Q
    |||||||||||||||          |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41403395 tatacaatacaataa----------ttcttttatttatttgttggtgtgaccataaaatataatcatgaatctttaaacatacctttagggattctgcat 41403306  T
Q  307 ctgtaactgca 317  Q
    |||||||||||    
T  41403305 ctgtaactgca 41403295  T

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