View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1720-Insertion-5 (Length: 686)

Name: NF1720-Insertion-5
Description: NF1720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1720-Insertion-5
NF1720-Insertion-5
[»] chr4 (1 HSPs)
chr4 (6-686)||(1792384-1793065)


Alignment Details
Target: chr4 (Bit Score: 580; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 580; E-Value: 0
Query Start/End: Original strand, 6 - 686
Target Start/End: Complemental strand, 1793065 - 1792384
Alignment:
Q  6 catttagtaatatgtaattataaatagagtaatgatgcattgaccaccctatatggcaaccctccatgattcgaattccttgcaggttaggttttccaca 105  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1793065 catttagtaatatgtaattataaatagagcaatgatgcattgaccaccctatatggcaaccctccatgattcgaattccttgcaggttaggttttccaca 1792966  T
Q  106 ttattcatacagtcagatgcattgtttgtggatggatcgaaatcggaggatgtaggtttcatgcagnnnnnnnnaatctagaaaaaccaaatataaaatt 205  Q
    ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||        ||||||||||||||||||||||||||    
T  1792965 ttattcatacagtcagatgcattgtttgtcgatggatcaaaatcggaggatgtaggtttcatgcagttttttttaatctagaaaaaccaaatataaaatt 1792866  T
Q  206 tgcgtgaatgcaggaaatctgcatgaattggaatccctattaaagggcagtatatggtaggtaacattctgagtaaatagcaaagaaagaatgtctcatt 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1792865 tgcgtgaatgcaggaaatctgcatgaattggaatccctattaaagcgcagtatatggtaggtaacattctgagtaaatagcaaagaaagaatgtctcatt 1792766  T
Q  306 cacacacaagcttaggtatgcgtgcatttgaagaataagaatgtgggttttcatggagaatagagaatcaagggggtgaagcacaaggagttatttgtgt 405  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1792765 cacacacaagcttaggtatgcgtgcatttgaagaataagaatgtgggttttcatggagaatagagaatcaagggggtgaagcacaaggagttatttgtgt 1792666  T
Q  406 tttgcacattctttgagccaagggttttgtcattgccacgtttacccatgttttcctctaaatttgacaacgattaagaaagtcccaagaataaaagac- 504  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  1792665 tttgcacattctttgaaccaagggttttgtcattgccacgtttacccatgttttcctctaaatttgacaacgattaagaaagtcccaagaataaaagaca 1792566  T
Q  505 nnnnnnngtgtgattcaatgatatctttatcattttcgtacttaagtgttatgcacatttgtataagcttccatgccttttttgcaaagtttcatgcctt 604  Q
           |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  1792565 aaaaaaagtgtgattcaatgatatctttatcattttcgtacttaagtgttatgcaaatttgtataagcttccatgccttttttgcaaagtttcatgcctt 1792466  T
Q  605 atgggaattgtgagtttttgcataaattatgcaaccnnnnnnngtgttttatttcaggtcaatttggggaagtgcttttcaa 686  Q
    ||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||| ||||||||||||||||    
T  1792465 atgggaattgtgagtttttgcataaattatgcaacctttttttgtgttttatttcaggtcaatttagggaagtgcttttcaa 1792384  T

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