View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1720-Insertion-6 (Length: 952)

Name: NF1720-Insertion-6
Description: NF1720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1720-Insertion-6
NF1720-Insertion-6
[»] chr4 (9 HSPs)
chr4 (7-952)||(46873276-46874223)
chr4 (713-938)||(46891771-46892008)
chr4 (7-85)||(46890688-46890766)
chr4 (361-435)||(46891043-46891117)
chr4 (638-704)||(46891392-46891458)
chr4 (478-617)||(46891255-46891396)
chr4 (639-704)||(46900046-46900111)
chr4 (518-577)||(18968310-18968369)
chr4 (548-577)||(35522102-35522131)
[»] chr1 (5 HSPs)
chr1 (357-462)||(48232114-48232219)
chr1 (357-462)||(48237154-48237259)
chr1 (239-289)||(48232222-48232273)
chr1 (239-289)||(48237262-48237313)
chr1 (532-577)||(26238437-26238482)


Alignment Details
Target: chr4 (Bit Score: 856; Significance: 0; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 856; E-Value: 0
Query Start/End: Original strand, 7 - 952
Target Start/End: Original strand, 46873276 - 46874223
Alignment:
Q  7 aacaataactcattttgattattggttttggttttatcatataattctactgttttatattgttcaatcatataaaatannnnnnnnnnnnaattttcta 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            |||||||||    
T  46873276 aacaataactcattttgattattggttttggttttatcatataattctactgttttatattgttcaatcatataaaatatgttttttttt-aattttcta 46873374  T
Q  107 gatgctgtgtagaatgtcattttatgtgatatgatgtgcaaattacagcgattaattaaatgatttgaatgtgtgtcattttgtggttgcgttgtctatt 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46873375 gatgctgtgtagaatgtcattttatgtgatatgatgtgcaaattacagcgattaattaaatgatttgaatgtgtgtcattttgtggttgcgttgtctatt 46873474  T
Q  207 atgtttcatgtttgatttgacagagcaagttttgaatggaaaatgattccatccttgtttataggcagagcaagttctgaatgagcaattgttatattgt 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46873475 atgtttcatgtttgatttgacagagcaagttttgaatggaaaatgattccatccttgtttataggcagagcaagttctgaatgagcaattgttatattgt 46873574  T
Q  307 ttatacaacaaatgccgcttcagttttgaaataatgggccacattcctgtatgattaatgatcacattatctccttgttatcaaatttcttccataatta 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46873575 ttatacaacaaatgccgcttcagttttgaaataatgggccacattcctgtatgattaatgatcacattatctccttgttatcaaatttcttccataatta 46873674  T
Q  407 agccgtggcatggcggactttgtgctagttggcatatgctactgtgactattatacgatgtggcatggcggacattgtgttgttaattgcggttcgcgga 506  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46873675 agccgtggcatggtggactttgtgctagttggcatatgctactgtgactattatacgatgtggcatggcggacattgtgttgttaattgcggttcgcgga 46873774  T
Q  507 aaaatatgctagttcaaattccgctctgcaatagtgctttagccgctatttcacaatattttgcactaaatgacttttcgcggggcattagcgagttgtt 606  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46873775 aaaatatgctagttcaaattccgctctgcaatagtgctttagccgctatttcacaatattttgcactaaatgacttttcgcggggcattagcgagttgtt 46873874  T
Q  607 caaatcccgctctgcaatagctccaatgcagccgctatttaacaacacttgcataacacttgaatgaaattatgaattttcccgtcaaccccattgtccg 706  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||    
T  46873875 caaatcccgctctgcaatagctccaatgcagccgctatttaacaacacttgcacaacacttgaatgaaattatgaattttcccgtcaaccccattatccg 46873974  T
Q  707 agtcatcaatcattttgaggtgcattgctcatttgcaaagttttaaattgcgaccatgccgcgatccttaataccgcggtcaaataaggttaatgcagct 806  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46873975 agtcatcaataattttgaggtgcattgctcatttgcaaagttttaaattgcgaccatgccgcgatccttaataccgcggtcaaataaggttaatgcagct 46874074  T
Q  807 gcatttgtgatgatgaagacataagacatctgtacgtcacagccacagttgtgatcctagaccttatattt-aaaaaatcttgttcgcttgtgtgcgagt 905  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||    
T  46874075 gcatttgtgatgatgaagacataagacatctgtacgtctcagccacagttgtggtcctagaccttatatttaaaaaaatcttgttcgcttgtgtgcgagt 46874174  T
Q  906 gtatgataacttata-ttgcatattgtgagc-aaattacatgatgatta 952  Q
    ||||||||||||||| ||||||||||||||| |||||||| ||||||||    
T  46874175 gtatgataacttatatttgcatattgtgagcaaaattacaagatgatta 46874223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 713 - 938
Target Start/End: Original strand, 46891771 - 46892008
Alignment:
Q  713 caatcattttgaggtgcattgctcatttgcaaagttttaaattgcgaccatgccgcgatccttaataccgcggtcaaataaggttaatgcagctgcattt 812  Q
    |||| |||||||||| ||||| |||||||||||||||||||||| ||||||||||||||||||||||  | ||||||||| |||||||||||||||||||    
T  46891771 caataattttgaggtacattgttcatttgcaaagttttaaattgtgaccatgccgcgatccttaatattggggtcaaatatggttaatgcagctgcattt 46891870  T
Q  813 gtg-----atg-atgaagacata---agacatctgtacgtcacagccacagttgtgatcctagaccttatattt-aaaaaatcttgttcgcttgtgtg-c 901  Q
    |||     ||| ||||  || ||      |||||||||||| ||||||||||  || ||  ||||||||||||| |||||||||||||||||||||||      
T  46891871 gtgtgtgaatgtatgataacttatatttgcatctgtacgtctcagccacagtcatggtcgcagaccttatatttaaaaaaatcttgttcgcttgtgtgta 46891970  T
Q  902 gagtgtatgataacttata-ttgcatattgtgagcaaa 938  Q
     | | |||||||||||||| ||||||||||||||||||    
T  46891971 aaatatatgataacttatatttgcatattgtgagcaaa 46892008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 7 - 85
Target Start/End: Original strand, 46890688 - 46890766
Alignment:
Q  7 aacaataactcattttgattattggttttggttttatcatataattctactgttttatattgttcaatcatataaaata 85  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||| || ||||| ||||| ||| ||||||||||    
T  46890688 aacaataactcattttgcttattggttttggttttatcatataattctattgctttattttgtttaattatataaaata 46890766  T

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Target: chr4; HSP #4
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 361 - 435
Target Start/End: Original strand, 46891043 - 46891117
Alignment:
Q  361 ttaatgatcacattatctccttgttatcaaatttcttccataattaagccgtggcatggcggactttgtgctagt 435  Q
    |||||||||||||||||||||||||||||||||||| |||||| |  || |||||||||||||||||||||||||    
T  46891043 ttaatgatcacattatctccttgttatcaaatttctgccataaatgggctgtggcatggcggactttgtgctagt 46891117  T

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Target: chr4; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 638 - 704
Target Start/End: Original strand, 46891392 - 46891458
Alignment:
Q  638 ccgctatttaacaacacttgcataacacttgaatgaaattatgaattttcccgtcaaccccattgtc 704  Q
    ||||||||||||||||||| ||||| |||||||||||||| |||||||| ||||||||| |||||||    
T  46891392 ccgctatttaacaacacttacataatacttgaatgaaattctgaatttttccgtcaaccacattgtc 46891458  T

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Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 478 - 617
Target Start/End: Original strand, 46891255 - 46891396
Alignment:
Q  478 acattgtgttgttaattgcggttcgcggaaaaatatgct-agttcaaattccgctctgcaatagtgctttagccgctatttcacaatattttgcactaaa 576  Q
    ||||||||||||||||||| ||| |||||| ||| || | ||||| || |  | |||| ||||||||| |||||||||||||||||||||||| ||||||    
T  46891255 acattgtgttgttaattgcagtttgcggaataatgtggttagttccaaatatgttctgtaatagtgctatagccgctatttcacaatattttgtactaaa 46891354  T
Q  577 tgacttttcg-cggggcattagcgagttgttcaaatcccgct 617  Q
    | |  ||| |  |||||| ||| || ||||||||||||||||    
T  46891355 taaagtttggtgggggcaatagtgatttgttcaaatcccgct 46891396  T

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Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 639 - 704
Target Start/End: Original strand, 46900046 - 46900111
Alignment:
Q  639 cgctatttaacaacacttgcataacacttgaatgaaattatgaattttcccgtcaaccccattgtc 704  Q
    |||||||| ||| ||||| ||||| |||||||||||||| ||  ||||||| ||||||||||||||    
T  46900046 cgctatttgacatcacttacataatacttgaatgaaattctgctttttcccatcaaccccattgtc 46900111  T

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Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 518 - 577
Target Start/End: Complemental strand, 18968369 - 18968310
Alignment:
Q  518 gttcaaattccgctctgcaatagtgctttagccgctatttcacaatattttgcactaaat 577  Q
    ||||||||| |||| |||||||||| | |||||||||||| |||| |||||| |||||||    
T  18968369 gttcaaattacgctatgcaatagtgttatagccgctatttgacaacattttgtactaaat 18968310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 548 - 577
Target Start/End: Complemental strand, 35522131 - 35522102
Alignment:
Q  548 gccgctatttcacaatattttgcactaaat 577  Q
    ||||||||||||||||||||||||||||||    
T  35522131 gccgctatttcacaatattttgcactaaat 35522102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 1e-16; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 357 - 462
Target Start/End: Complemental strand, 48232219 - 48232114
Alignment:
Q  357 atgattaatgatcacattatctccttgttatcaaatttcttccataattaagccgtggcatggcggactttgtgctagttggcatatgctactgtgacta 456  Q
    |||||||| ||||||||||||||||||||||||||||||| | | || |   | ||||||||||||||||||||||||  ||||||  ||||  ||||||    
T  48232219 atgattaacgatcacattatctccttgttatcaaatttctgctaaaaatggcctgtggcatggcggactttgtgctagcgggcatagtctaccatgacta 48232120  T
Q  457 ttatac 462  Q
    ||||||    
T  48232119 ttatac 48232114  T

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Target: chr1; HSP #2
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 357 - 462
Target Start/End: Complemental strand, 48237259 - 48237154
Alignment:
Q  357 atgattaatgatcacattatctccttgttatcaaatttcttccataattaagccgtggcatggcggactttgtgctagttggcatatgctactgtgacta 456  Q
    |||||||| ||||||||||||||||||||||||||||||| | | || |   | ||||||||||||||||||||||||  ||||||  ||||  ||||||    
T  48237259 atgattaacgatcacattatctccttgttatcaaatttctgctaaaaatggcctgtggcatggcggactttgtgctagcgggcatagtctaccatgacta 48237160  T
Q  457 ttatac 462  Q
    ||||||    
T  48237159 ttatac 48237154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 239 - 289
Target Start/End: Complemental strand, 48232273 - 48232222
Alignment:
Q  239 tgaatggaaaatgatt-ccatccttgtttataggcagagcaagttctgaatg 289  Q
    |||||||||||||||| |||||||||||||||||||||||| ||||||||||    
T  48232273 tgaatggaaaatgatttccatccttgtttataggcagagcaggttctgaatg 48232222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 239 - 289
Target Start/End: Complemental strand, 48237313 - 48237262
Alignment:
Q  239 tgaatggaaaatgatt-ccatccttgtttataggcagagcaagttctgaatg 289  Q
    |||||||||||||||| |||||||||||||||||||||||| ||||||||||    
T  48237313 tgaatggaaaatgatttccatccttgtttataggcagagcaggttctgaatg 48237262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 532 - 577
Target Start/End: Original strand, 26238437 - 26238482
Alignment:
Q  532 ctgcaatagtgctttagccgctatttcacaatattttgcactaaat 577  Q
    ||||||||||||| ||||||||||||  |||||||||| |||||||    
T  26238437 ctgcaatagtgctatagccgctatttggcaatattttgtactaaat 26238482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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