View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1720-Insertion-7 (Length: 882)

Name: NF1720-Insertion-7
Description: NF1720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1720-Insertion-7
NF1720-Insertion-7
[»] chr2 (15 HSPs)
chr2 (445-882)||(8920123-8920559)
chr2 (10-378)||(8920613-8920978)
chr2 (445-510)||(36547225-36547290)
chr2 (457-505)||(231595-231643)
chr2 (458-510)||(8788297-8788349)
chr2 (458-510)||(35451246-35451298)
chr2 (461-505)||(40967377-40967421)
chr2 (445-493)||(42200710-42200758)
chr2 (445-510)||(10156023-10156088)
chr2 (458-511)||(22441182-22441235)
chr2 (461-510)||(22523018-22523067)
chr2 (445-510)||(24393251-24393316)
chr2 (473-510)||(27244663-27244700)
chr2 (458-495)||(40096852-40096889)
chr2 (445-494)||(40797386-40797435)
[»] chr3 (19 HSPs)
chr3 (445-510)||(33404234-33404299)
chr3 (445-510)||(5117214-5117279)
chr3 (445-510)||(17755127-17755192)
chr3 (445-510)||(19056447-19056512)
chr3 (473-505)||(1111859-1111891)
chr3 (445-505)||(10440695-10440755)
chr3 (458-510)||(30200832-30200884)
chr3 (445-505)||(47039438-47039498)
chr3 (453-503)||(8139728-8139778)
chr3 (465-503)||(23629780-23629818)
chr3 (452-510)||(35492799-35492857)
chr3 (445-511)||(37920988-37921054)
chr3 (477-511)||(48209233-48209267)
chr3 (461-503)||(52453263-52453305)
chr3 (469-510)||(759608-759649)
chr3 (461-510)||(20400083-20400132)
chr3 (473-510)||(27185483-27185520)
chr3 (458-511)||(54230102-54230155)
chr3 (461-510)||(55126012-55126061)
[»] chr7 (11 HSPs)
chr7 (445-510)||(35142139-35142204)
chr7 (452-505)||(44106639-44106692)
chr7 (445-505)||(28200375-28200435)
chr7 (473-511)||(3672570-3672608)
chr7 (473-511)||(16577878-16577916)
chr7 (473-511)||(16587746-16587784)
chr7 (473-511)||(35222929-35222967)
chr7 (453-510)||(5833048-5833105)
chr7 (445-510)||(7249037-7249102)
chr7 (457-494)||(25017803-25017840)
chr7 (462-511)||(34773236-34773285)
[»] chr8 (4 HSPs)
chr8 (205-327)||(34790188-34790310)
chr8 (445-505)||(7948386-7948446)
chr8 (457-510)||(2554214-2554267)
chr8 (473-510)||(11771713-11771750)
[»] chr1 (11 HSPs)
chr1 (447-505)||(28455345-28455403)
chr1 (445-505)||(1408446-1408506)
chr1 (445-495)||(34899616-34899666)
chr1 (461-511)||(41974766-41974816)
chr1 (461-510)||(30279626-30279675)
chr1 (461-505)||(32209844-32209888)
chr1 (473-511)||(47070853-47070891)
chr1 (473-510)||(12213999-12214036)
chr1 (445-494)||(14644511-14644560)
chr1 (446-511)||(32874380-32874445)
chr1 (457-510)||(34808565-34808618)
[»] chr6 (4 HSPs)
chr6 (461-510)||(29069489-29069538)
chr6 (447-510)||(28046170-28046233)
chr6 (473-510)||(21847200-21847237)
chr6 (445-486)||(31638768-31638809)
[»] chr5 (7 HSPs)
chr5 (445-510)||(31308633-31308698)
chr5 (447-511)||(11017181-11017245)
chr5 (458-512)||(2705519-2705573)
chr5 (469-511)||(17861984-17862026)
chr5 (461-511)||(33899849-33899899)
chr5 (445-510)||(20114711-20114776)
chr5 (448-505)||(35773043-35773100)
[»] chr4 (9 HSPs)
chr4 (473-510)||(43702347-43702384)
chr4 (458-514)||(29808271-29808327)
chr4 (445-505)||(30380541-30380601)
chr4 (445-505)||(46434750-46434810)
chr4 (458-505)||(19124625-19124672)
chr4 (457-511)||(21052559-21052613)
chr4 (452-493)||(6520094-6520135)
chr4 (445-510)||(38416063-38416128)
chr4 (472-505)||(40847084-40847117)
[»] scaffold0086 (1 HSPs)
scaffold0086 (458-510)||(1613-1665)
[»] scaffold0066 (1 HSPs)
scaffold0066 (445-511)||(17509-17575)
[»] scaffold0045 (2 HSPs)
scaffold0045 (461-511)||(63867-63917)
scaffold0045 (461-511)||(71199-71249)
[»] scaffold0053 (1 HSPs)
scaffold0053 (456-505)||(14211-14260)
[»] scaffold0016 (1 HSPs)
scaffold0016 (452-505)||(99048-99101)
[»] scaffold0007 (1 HSPs)
scaffold0007 (470-511)||(221028-221069)


Alignment Details
Target: chr2 (Bit Score: 330; Significance: 0; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 445 - 882
Target Start/End: Complemental strand, 8920559 - 8920123
Alignment:
Q  445 gtggtgttcggaattcgaacctcaaactttgcatatattatgtattgtccctatcaactgacctaaattcgctagaacgcgattgtttattaagtggaaa 544  Q
    |||||||| |||||||||||||||||| |||||||||||||||| |||||||| |||||||||||| |||| || |||||||||||||| | ||||| ||    
T  8920559 gtggtgtttggaattcgaacctcaaaccttgcatatattatgtactgtccctaccaactgacctaagttcg-taaaacgcgattgtttaattagtgggaa 8920461  T
Q  545 gtgaatatatgattaattgatcgactattatttcagagagnnnnnnnngattcatgactaggataaagtagttagaaagaatataacgtgtagctaggtg 644  Q
    ||||||||||||||||||||||||||| ||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8920460 gtgaatatatgattaattgatcgactactatttcagagagaaaaaaa-gattcatgactaggataaagtagttagaaagaatataacgtgtagctaggtg 8920362  T
Q  645 ggtcatttcgtgtaaaaatgaattagactaaagctgatcacatcacaaatcaattcccatccaagctttagattgaattgactatcatagtattccccac 744  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||    
T  8920361 ggtcatttcgtgtaaaaatgaattagactaaaactgatcacatcacaaatcaattcccgtccaagctttagattgaattgactatcatagtattccacac 8920262  T
Q  745 attcttatgataagatttaacttgattttattctattctctatccatggtttgaagaggagaatgcctttctaaatgtgaactgcttgtgaatccggaag 844  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  8920261 attcttatgataagatttaacttgattttattctattctctatccatggtttgaagaggagaatgcctttctaaatgtgaactgcttgtgaatccagaag 8920162  T
Q  845 agtcttt-caaatgactaggctgtgttggtctatcacta 882  Q
    |||||||  ||||||||||||| ||||||||||||||||    
T  8920161 agtctttgaaaatgactaggctatgttggtctatcacta 8920123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 10 - 378
Target Start/End: Complemental strand, 8920978 - 8920613
Alignment:
Q  10 gtcatgccaacaaaacaattgttccagggatgattaatttagttggttgaactaaaagattaaaggaggtaagaagtaaaagtttagaattcaaatacaa 109  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8920978 gtcatgccaacaaaacaattgttccagggatgattaatttagttcgttgaactaaaagattaaaggaggtaagaagtaaaagtttagaattcaaatacaa 8920879  T
Q  110 ataaagtagaaaaatattaacataacataacaactaacatnnnnnnnntaatgattttgagtttgtcatttttgcataggaaattggaatatttctttca 209  Q
    |||||||||||||||||||||||||||     |||| |||         |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8920878 ataaagtagaaaaatattaacataaca-----actatcataaaaatagcaatgattttgagtttgtcatttttgcataggaaattggaatatttctttca 8920784  T
Q  210 gcatattcttagagagggaaattaatgtgtcgaatggcttgcaaagaccgaagcttcatccagcaatatcttaaaactttggaatagttgtcctcggcaa 309  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||| ||| ||||||||||| |||||||| ||||||||||||||||||||||||||    
T  8920783 gcatattcttagagagggaaattaatgtgtcgaatggtttgcaaagactgaaacttcatccagcgatatcttacaactttggaatagttgtcctcggcaa 8920684  T
Q  310 ttcagtatcgtgttgatgactgatattgtaggcattgct--tgttcgagcttagtttcttttcatgtttcc 378  Q
    |||||||||||||||||||||||||||||||||||||||  ||| ||||||||||||||||||||||||||    
T  8920683 ttcagtatcgtgttgatgactgatattgtaggcattgcttgtgtgcgagcttagtttcttttcatgtttcc 8920613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 445 - 510
Target Start/End: Original strand, 36547225 - 36547290
Alignment:
Q  445 gtggtgttcggaattcgaacctcaaactttgcatatattatgtattgtccctatcaactgacctaa 510  Q
    ||||||| |||||||||||||||||||||||||||||||||  ||| ||| || ||||||| ||||    
T  36547225 gtggtgtgcggaattcgaacctcaaactttgcatatattatacattatccttaccaactgagctaa 36547290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 457 - 505
Target Start/End: Original strand, 231595 - 231643
Alignment:
Q  457 attcgaacctcaaactttgcatatattatgtattgtccctatcaactga 505  Q
    ||||||||||||||| |||||||||||||||||||||| || |||||||    
T  231595 attcgaacctcaaaccttgcatatattatgtattgtccataccaactga 231643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 458 - 510
Target Start/End: Original strand, 8788297 - 8788349
Alignment:
Q  458 ttcgaacctcaaactttgcatatattatgtattgtccctatcaactgacctaa 510  Q
    ||||||||| |||  || ||||||||||||||||| |||||||||||||||||    
T  8788297 ttcgaaccttaaatcttacatatattatgtattgttcctatcaactgacctaa 8788349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 458 - 510
Target Start/End: Original strand, 35451246 - 35451298
Alignment:
Q  458 ttcgaacctcaaactttgcatatattatgtattgtccctatcaactgacctaa 510  Q
    ||||||| || ||||||||||||||||||||||||| ||| ||||||| ||||    
T  35451246 ttcgaacttctaactttgcatatattatgtattgtctctaccaactgagctaa 35451298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 461 - 505
Target Start/End: Original strand, 40967377 - 40967421
Alignment:
Q  461 gaacctcaaactttgcatatattatgtattgtccctatcaactga 505  Q
    ||||||||||| |||||||||||||| ||||||| ||||||||||    
T  40967377 gaacctcaaaccttgcatatattatgcattgtccttatcaactga 40967421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 445 - 493
Target Start/End: Complemental strand, 42200758 - 42200710
Alignment:
Q  445 gtggtgttcggaattcgaacctcaaactttgcatatattatgtattgtc 493  Q
    ||||||| |||||||||||| ||| || |||||||||||||||||||||    
T  42200758 gtggtgtccggaattcgaacatcagaccttgcatatattatgtattgtc 42200710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 445 - 510
Target Start/End: Complemental strand, 10156088 - 10156023
Alignment:
Q  445 gtggtgttcggaattcgaacctcaaactttgcatatattatgtattgtccctatcaactgacctaa 510  Q
    |||||| |||| ||||||||  | ||| |||||||||||||||||||||| || ||||||| ||||    
T  10156088 gtggtggtcgggattcgaacaccgaaccttgcatatattatgtattgtccttaccaactgagctaa 10156023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 458 - 511
Target Start/End: Complemental strand, 22441235 - 22441182
Alignment:
Q  458 ttcgaacctcaaactttgcatatattatgtattgtccctatcaactgacctaaa 511  Q
    ||||||| |||||| || ||||||| ||||||||||| |||||||||| |||||    
T  22441235 ttcgaacttcaaacattacatatatgatgtattgtccttatcaactgagctaaa 22441182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 461 - 510
Target Start/End: Original strand, 22523018 - 22523067
Alignment:
Q  461 gaacctcaaactttgcatatattatgtattgtccctatcaactgacctaa 510  Q
    ||||||| ||| |||||||||||||||||||||| || ||||||| ||||    
T  22523018 gaacctcgaaccttgcatatattatgtattgtccataccaactgagctaa 22523067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 445 - 510
Target Start/End: Complemental strand, 24393316 - 24393251
Alignment:
Q  445 gtggtgttcggaattcgaacctcaaactttgcatatattatgtattgtccctatcaactgacctaa 510  Q
    ||||||| |||  ||||||||||| || |||||||||||||| ||||||| || ||||||| ||||    
T  24393316 gtggtgtccggggttcgaacctcagaccttgcatatattatgcattgtccttaacaactgagctaa 24393251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 473 - 510
Target Start/End: Complemental strand, 27244700 - 27244663
Alignment:
Q  473 ttgcatatattatgtattgtccctatcaactgacctaa 510  Q
    |||||||||||||| |||||||||||||||||| ||||    
T  27244700 ttgcatatattatgcattgtccctatcaactgagctaa 27244663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 458 - 495
Target Start/End: Complemental strand, 40096889 - 40096852
Alignment:
Q  458 ttcgaacctcaaactttgcatatattatgtattgtccc 495  Q
    ||||||||||| ||||||||||||||||| ||||||||    
T  40096889 ttcgaacctcagactttgcatatattatgcattgtccc 40096852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 445 - 494
Target Start/End: Complemental strand, 40797435 - 40797386
Alignment:
Q  445 gtggtgttcggaattcgaacctcaaactttgcatatattatgtattgtcc 494  Q
    |||||||||||||||||||||| | || ||| |||||||||| |||||||    
T  40797435 gtggtgttcggaattcgaaccttagaccttgtatatattatgcattgtcc 40797386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 9e-17; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 445 - 510
Target Start/End: Complemental strand, 33404299 - 33404234
Alignment:
Q  445 gtggtgttcggaattcgaacctcaaactttgcatatattatgtattgtccctatcaactgacctaa 510  Q
    |||||| |||||||| |||||||||||||| ||||||||||||||||||| |||||||||| ||||    
T  33404299 gtggtgatcggaatttgaacctcaaactttacatatattatgtattgtccatatcaactgagctaa 33404234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 445 - 510
Target Start/End: Complemental strand, 5117279 - 5117214
Alignment:
Q  445 gtggtgttcggaattcgaacctcaaactttgcatatattatgtattgtccctatcaactgacctaa 510  Q
    |||||| | ||| |||||||||||||| || ||||||||||||||||||| |||||||||| ||||    
T  5117279 gtggtggttggacttcgaacctcaaaccttacatatattatgtattgtccttatcaactgagctaa 5117214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 445 - 510
Target Start/End: Complemental strand, 17755192 - 17755127
Alignment:
Q  445 gtggtgttcggaattcgaacctcaaactttgcatatattatgtattgtccctatcaactgacctaa 510  Q
    |||||| |||||||| ||||| | ||| || ||||||||||||||||| |||||||||||| ||||    
T  17755192 gtggtggtcggaatttgaaccccgaaccttacatatattatgtattgttcctatcaactgagctaa 17755127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 445 - 510
Target Start/End: Complemental strand, 19056512 - 19056447
Alignment:
Q  445 gtggtgttcggaattcgaacctcaaactttgcatatattatgtattgtccctatcaactgacctaa 510  Q
    |||||| |||||||| ||||| | ||| || ||||||||||||||||| |||||||||||| ||||    
T  19056512 gtggtggtcggaatttgaaccccgaaccttacatatattatgtattgttcctatcaactgagctaa 19056447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 473 - 505
Target Start/End: Original strand, 1111859 - 1111891
Alignment:
Q  473 ttgcatatattatgtattgtccctatcaactga 505  Q
    |||||||||||||||||||||||||||||||||    
T  1111859 ttgcatatattatgtattgtccctatcaactga 1111891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 445 - 505
Target Start/End: Complemental strand, 10440755 - 10440695
Alignment:
Q  445 gtggtgttcggaattcgaacctcaaactttgcatatattatgtattgtccctatcaactga 505  Q
    |||||| ||||||||||||||||  || |||||||||||||| |||||| ||| |||||||    
T  10440755 gtggtggtcggaattcgaacctcgtaccttgcatatattatgcattgtctctaccaactga 10440695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 458 - 510
Target Start/End: Complemental strand, 30200884 - 30200832
Alignment:
Q  458 ttcgaacctcaaactttgcatatattatgtattgtccctatcaactgacctaa 510  Q
    |||||||||||||| |||||||||||||| ||||||| || ||||||| ||||    
T  30200884 ttcgaacctcaaaccttgcatatattatgcattgtccttagcaactgagctaa 30200832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 445 - 505
Target Start/End: Complemental strand, 47039498 - 47039438
Alignment:
Q  445 gtggtgttcggaattcgaacctcaaactttgcatatattatgtattgtccctatcaactga 505  Q
    |||||| |||| ||||||||| | |||||||||||||||||| ||||||| ||||| ||||    
T  47039498 gtggtggtcgggattcgaaccccgaactttgcatatattatgcattgtccttatcatctga 47039438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 453 - 503
Target Start/End: Complemental strand, 8139778 - 8139728
Alignment:
Q  453 cggaattcgaacctcaaactttgcatatattatgtattgtccctatcaact 503  Q
    |||||||||||||||| || |||||||||||||| ||||||| || |||||    
T  8139778 cggaattcgaacctcagaccttgcatatattatgcattgtccataccaact 8139728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 465 - 503
Target Start/End: Complemental strand, 23629818 - 23629780
Alignment:
Q  465 ctcaaactttgcatatattatgtattgtccctatcaact 503  Q
    ||||||| ||||||||||||| |||||||||||||||||    
T  23629818 ctcaaaccttgcatatattatatattgtccctatcaact 23629780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 452 - 510
Target Start/End: Complemental strand, 35492857 - 35492799
Alignment:
Q  452 tcggaattcgaacctcaaactttgcatatattatgtattgtccctatcaactgacctaa 510  Q
    |||| ||||||||||| |||||||||||||||||| ||||| | || ||||||| ||||    
T  35492857 tcgggattcgaacctcgaactttgcatatattatgcattgttcttaccaactgagctaa 35492799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 445 - 511
Target Start/End: Original strand, 37920988 - 37921054
Alignment:
Q  445 gtggtgttcggaattcgaacctcaaactttgcatatattatgtattgtccctatcaactgacctaaa 511  Q
    ||||||| ||| ||| ||||| || || |||||||||||||| ||| |||||||||||||| |||||    
T  37920988 gtggtgtccgggatttgaaccgcagacattgcatatattatgcattatccctatcaactgagctaaa 37921054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 477 - 511
Target Start/End: Original strand, 48209233 - 48209267
Alignment:
Q  477 atatattatgtattgtccctatcaactgacctaaa 511  Q
    ||||||||||||||||||||||||||||| |||||    
T  48209233 atatattatgtattgtccctatcaactgagctaaa 48209267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 461 - 503
Target Start/End: Original strand, 52453263 - 52453305
Alignment:
Q  461 gaacctcaaactttgcatatattatgtattgtccctatcaact 503  Q
    ||||||| |||||||||||||||||| ||||||||||| ||||    
T  52453263 gaacctcgaactttgcatatattatgcattgtccctattaact 52453305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 469 - 510
Target Start/End: Original strand, 759608 - 759649
Alignment:
Q  469 aactttgcatatattatgtattgtccctatcaactgacctaa 510  Q
    |||||||||||||||||| |||||||||| ||||||| ||||    
T  759608 aactttgcatatattatgcattgtccctaccaactgaactaa 759649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 461 - 510
Target Start/End: Complemental strand, 20400132 - 20400083
Alignment:
Q  461 gaacctcaaactttgcatatattatgtattgtccctatcaactgacctaa 510  Q
    |||||||| || ||||||||||||||||||||| || |||||||| ||||    
T  20400132 gaacctcagaccttgcatatattatgtattgtctctgtcaactgagctaa 20400083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 473 - 510
Target Start/End: Complemental strand, 27185520 - 27185483
Alignment:
Q  473 ttgcatatattatgtattgtccctatcaactgacctaa 510  Q
    ||||||||||||||||||||||||| ||||||| ||||    
T  27185520 ttgcatatattatgtattgtccctaccaactgagctaa 27185483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 458 - 511
Target Start/End: Original strand, 54230102 - 54230155
Alignment:
Q  458 ttcgaacctcaaactttgcatatattatgtattgtccctatcaactgacctaaa 511  Q
    |||||||| ||||| |||||||||||||| ||||||| || ||||||| |||||    
T  54230102 ttcgaaccccaaaccttgcatatattatgcattgtccttaccaactgagctaaa 54230155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 461 - 510
Target Start/End: Complemental strand, 55126061 - 55126012
Alignment:
Q  461 gaacctcaaactttgcatatattatgtattgtccctatcaactgacctaa 510  Q
    ||||||| ||| ||||||||||||||||||||||  ||||||||| ||||    
T  55126061 gaacctcgaaccttgcatatattatgtattgtcctcatcaactgagctaa 55126012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 445 - 510
Target Start/End: Original strand, 35142139 - 35142204
Alignment:
Q  445 gtggtgttcggaattcgaacctcaaactttgcatatattatgtattgtccctatcaactgacctaa 510  Q
    |||||| ||||  ||||||||||||||||||||||||||||| ||||||| |||||||||| ||||    
T  35142139 gtggtggtcggggttcgaacctcaaactttgcatatattatgcattgtccatatcaactgagctaa 35142204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 452 - 505
Target Start/End: Complemental strand, 44106692 - 44106639
Alignment:
Q  452 tcggaattcgaacctcaaactttgcatatattatgtattgtccctatcaactga 505  Q
    ||||| ||||||||||  |||||||||||||||||||||||| |||||||||||    
T  44106692 tcggagttcgaacctcggactttgcatatattatgtattgtctctatcaactga 44106639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 445 - 505
Target Start/End: Original strand, 28200375 - 28200435
Alignment:
Q  445 gtggtgttcggaattcgaacctcaaactttgcatatattatgtattgtccctatcaactga 505  Q
    |||||| ||||| || ||||||| || ||||||||||||||||||||| |||| |||||||    
T  28200375 gtggtggtcggagtttgaacctcgaattttgcatatattatgtattgttcctaccaactga 28200435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 473 - 511
Target Start/End: Original strand, 3672570 - 3672608
Alignment:
Q  473 ttgcatatattatgtattgtccctatcaactgacctaaa 511  Q
    |||||||||||||||||||||| |||||||||| |||||    
T  3672570 ttgcatatattatgtattgtccatatcaactgagctaaa 3672608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 473 - 511
Target Start/End: Original strand, 16577878 - 16577916
Alignment:
Q  473 ttgcatatattatgtattgtccctatcaactgacctaaa 511  Q
    ||||||||||||||||||||||||| ||||||| |||||    
T  16577878 ttgcatatattatgtattgtccctaccaactgagctaaa 16577916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 473 - 511
Target Start/End: Complemental strand, 16587784 - 16587746
Alignment:
Q  473 ttgcatatattatgtattgtccctatcaactgacctaaa 511  Q
    ||||||||||||||||||||||||| ||||||| |||||    
T  16587784 ttgcatatattatgtattgtccctaccaactgagctaaa 16587746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 473 - 511
Target Start/End: Complemental strand, 35222967 - 35222929
Alignment:
Q  473 ttgcatatattatgtattgtccctatcaactgacctaaa 511  Q
    |||||||||| ||| ||||||||||||||||||||||||    
T  35222967 ttgcatatatcatgcattgtccctatcaactgacctaaa 35222929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 453 - 510
Target Start/End: Complemental strand, 5833105 - 5833048
Alignment:
Q  453 cggaattcgaacctcaaactttgcatatattatgtattgtccctatcaactgacctaa 510  Q
    ||||||||||||| ||||  |||||||||||||| ||| |||||| ||||||| ||||    
T  5833105 cggaattcgaaccacaaatattgcatatattatgcattatccctaccaactgagctaa 5833048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 445 - 510
Target Start/End: Original strand, 7249037 - 7249102
Alignment:
Q  445 gtggtgttcggaattcgaacctcaaactttgcatatattatgtattgtccctatcaactgacctaa 510  Q
    |||||| | |||||||||||  | || ||||||||||||||||||||||| || ||||||| ||||    
T  7249037 gtggtggttggaattcgaacaccgaattttgcatatattatgtattgtccttaccaactgatctaa 7249102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 457 - 494
Target Start/End: Original strand, 25017803 - 25017840
Alignment:
Q  457 attcgaacctcaaactttgcatatattatgtattgtcc 494  Q
    ||||||||||| |||||| |||||||||||||||||||    
T  25017803 attcgaacctccaactttacatatattatgtattgtcc 25017840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 462 - 511
Target Start/End: Complemental strand, 34773285 - 34773236
Alignment:
Q  462 aacctcaaactttgcatatattatgtattgtccctatcaactgacctaaa 511  Q
    ||||||| || |||||||||||||| |||||||||| ||||||| |||||    
T  34773285 aacctcataccttgcatatattatgcattgtccctaccaactgaactaaa 34773236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.000000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 205 - 327
Target Start/End: Complemental strand, 34790310 - 34790188
Alignment:
Q  205 tttcagcatattcttagagagggaaattaatgtgtcgaatggcttgcaaagaccgaagcttcatccagcaatatcttaaaactttggaatagttgtcctc 304  Q
    |||||||||| ||||||| | ||||||||||||||| | |  |||| ||||||||||||||| |||    ||| ||||||| |||||||||||| ||||     
T  34790310 tttcagcatactcttagataaggaaattaatgtgtcaattaacttgtaaagaccgaagcttcctcccatgataccttaaaattttggaatagttttccta 34790211  T
Q  305 ggcaattcagtatcgtgttgatg 327  Q
     |||| ||||| ||| |||||||    
T  34790210 tgcaactcagtctcgcgttgatg 34790188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 445 - 505
Target Start/End: Complemental strand, 7948446 - 7948386
Alignment:
Q  445 gtggtgttcggaattcgaacctcaaactttgcatatattatgtattgtccctatcaactga 505  Q
    ||||||||||| ||||||||| ||| |  ||||||||||||||| |||| |||||||||||    
T  7948446 gtggtgttcgggattcgaaccccaacccctgcatatattatgtaatgtctctatcaactga 7948386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 457 - 510
Target Start/End: Original strand, 2554214 - 2554267
Alignment:
Q  457 attcgaacctcaaactttgcatatattatgtattgtccctatcaactgacctaa 510  Q
    ||||||||| || || |||||||| ||||||||||||| |||||||||| ||||    
T  2554214 attcgaaccccagaccttgcatattttatgtattgtccatatcaactgagctaa 2554267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 473 - 510
Target Start/End: Complemental strand, 11771750 - 11771713
Alignment:
Q  473 ttgcatatattatgtattgtccctatcaactgacctaa 510  Q
    ||||||||||||||||||||| ||||||||||| ||||    
T  11771750 ttgcatatattatgtattgtctctatcaactgagctaa 11771713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.000000000001; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 447 - 505
Target Start/End: Original strand, 28455345 - 28455403
Alignment:
Q  447 ggtgttcggaattcgaacctcaaactttgcatatattatgtattgtccctatcaactga 505  Q
    |||| |||||||||||||| |||||||||||||||||||| |||||| ||| |||||||    
T  28455345 ggtggtcggaattcgaaccccaaactttgcatatattatgcattgtctctaccaactga 28455403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 445 - 505
Target Start/End: Complemental strand, 1408506 - 1408446
Alignment:
Q  445 gtggtgttcggaattcgaacctcaaactttgcatatattatgtattgtccctatcaactga 505  Q
    ||||||| |||||||||||| || |||||||||||||||||| ||||||| || |||||||    
T  1408506 gtggtgtccggaattcgaacttcgaactttgcatatattatgcattgtccttaccaactga 1408446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 445 - 495
Target Start/End: Original strand, 34899616 - 34899666
Alignment:
Q  445 gtggtgttcggaattcgaacctcaaactttgcatatattatgtattgtccc 495  Q
    |||||| ||||| || ||||| |||||||||||||||||||||||||||||    
T  34899616 gtggtggtcggagtttgaaccccaaactttgcatatattatgtattgtccc 34899666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 461 - 511
Target Start/End: Complemental strand, 41974816 - 41974766
Alignment:
Q  461 gaacctcaaactttgcatatattatgtattgtccctatcaactgacctaaa 511  Q
    ||||||||||| |||||||||||||| ||| |||||||||||||| |||||    
T  41974816 gaacctcaaaccttgcatatattatgcattatccctatcaactgaactaaa 41974766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 461 - 510
Target Start/End: Original strand, 30279626 - 30279675
Alignment:
Q  461 gaacctcaaactttgcatatattatgtattgtccctatcaactgacctaa 510  Q
    ||||||| ||| |||||||||||||||||||| |||||||||||| ||||    
T  30279626 gaacctccaacattgcatatattatgtattgtacctatcaactgagctaa 30279675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 461 - 505
Target Start/End: Original strand, 32209844 - 32209888
Alignment:
Q  461 gaacctcaaactttgcatatattatgtattgtccctatcaactga 505  Q
    ||||||| ||| |||||||||||||||||||| ||||||||||||    
T  32209844 gaacctcgaacgttgcatatattatgtattgttcctatcaactga 32209888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 473 - 511
Target Start/End: Complemental strand, 47070891 - 47070853
Alignment:
Q  473 ttgcatatattatgtattgtccctatcaactgacctaaa 511  Q
    |||||||||||||||||||| |||||||||||| |||||    
T  47070891 ttgcatatattatgtattgttcctatcaactgaactaaa 47070853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 473 - 510
Target Start/End: Complemental strand, 12214036 - 12213999
Alignment:
Q  473 ttgcatatattatgtattgtccctatcaactgacctaa 510  Q
    |||||||||||||||||||| |||||||||||| ||||    
T  12214036 ttgcatatattatgtattgttcctatcaactgagctaa 12213999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 445 - 494
Target Start/End: Original strand, 14644511 - 14644560
Alignment:
Q  445 gtggtgttcggaattcgaacctcaaactttgcatatattatgtattgtcc 494  Q
    ||||| ||||| |||| ||||||| ||||||||||||||||| |||||||    
T  14644511 gtggtattcgggattcaaacctcagactttgcatatattatgcattgtcc 14644560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 446 - 511
Target Start/End: Original strand, 32874380 - 32874445
Alignment:
Q  446 tggtgttcggaattcgaacctcaaactttgcatatattatgtattgtccctatcaactgacctaaa 511  Q
    ||||| |||||||||||||| | |||||| ||||||||||| |||| || || ||||||| |||||    
T  32874380 tggtggtcggaattcgaaccccgaactttacatatattatgcattgcccttaccaactgagctaaa 32874445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 457 - 510
Target Start/End: Original strand, 34808565 - 34808618
Alignment:
Q  457 attcgaacctcaaactttgcatatattatgtattgtccctatcaactgacctaa 510  Q
    ||||||||||| ||| |||||||||||||| ||||||| || ||||||| ||||    
T  34808565 attcgaacctcgaaccttgcatatattatgcattgtccttaacaactgagctaa 34808618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 461 - 510
Target Start/End: Complemental strand, 29069538 - 29069489
Alignment:
Q  461 gaacctcaaactttgcatatattatgtattgtccctatcaactgacctaa 510  Q
    |||||||| ||||| ||||||||||| |||||||||||||||||| ||||    
T  29069538 gaacctcagacttttcatatattatgcattgtccctatcaactgagctaa 29069489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 447 - 510
Target Start/End: Original strand, 28046170 - 28046233
Alignment:
Q  447 ggtgttcggaattcgaacctcaaactttgcatatattatgtattgtccctatcaactgacctaa 510  Q
    |||||||||  ||| |||||||||| |||||||||||||| ||||||  |||||||||| ||||    
T  28046170 ggtgttcggggttcaaacctcaaaccttgcatatattatgcattgtctttatcaactgaactaa 28046233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 473 - 510
Target Start/End: Complemental strand, 21847237 - 21847200
Alignment:
Q  473 ttgcatatattatgtattgtccctatcaactgacctaa 510  Q
    ||||||||||||||||||||||||| ||||||| ||||    
T  21847237 ttgcatatattatgtattgtccctaccaactgagctaa 21847200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 445 - 486
Target Start/End: Complemental strand, 31638809 - 31638768
Alignment:
Q  445 gtggtgttcggaattcgaacctcaaactttgcatatattatg 486  Q
    |||||||||| ||||||||| ||| |||||||||||||||||    
T  31638809 gtggtgttcgaaattcgaacatcagactttgcatatattatg 31638768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.000000001; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 445 - 510
Target Start/End: Original strand, 31308633 - 31308698
Alignment:
Q  445 gtggtgttcggaattcgaacctcaaactttgcatatattatgtattgtccctatcaactgacctaa 510  Q
    ||||||| ||||||||||||||| ||| ||||||||||||| |||||||  || ||||||| ||||    
T  31308633 gtggtgtccggaattcgaacctctaaccttgcatatattatatattgtctttaccaactgagctaa 31308698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 447 - 511
Target Start/End: Complemental strand, 11017245 - 11017181
Alignment:
Q  447 ggtgttcggaattcgaacctcaaactttgcatatattatgtattgtccctatcaactgacctaaa 511  Q
    ||||| ||| |||||||||||| || |||||||||||||| ||| |||||| ||||||| |||||    
T  11017245 ggtgtccgggattcgaacctcagaccttgcatatattatgcattatccctaccaactgagctaaa 11017181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 458 - 512
Target Start/End: Original strand, 2705519 - 2705573
Alignment:
Q  458 ttcgaacctcaaactttgcatatattatgtattgtccctatcaactgacctaaat 512  Q
    ||||||||||| || || ||||||||||||||||| | |||||||||| ||||||    
T  2705519 ttcgaacctcagaccttacatatattatgtattgttcttatcaactgagctaaat 2705573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 469 - 511
Target Start/End: Complemental strand, 17862026 - 17861984
Alignment:
Q  469 aactttgcatatattatgtattgtccctatcaactgacctaaa 511  Q
    |||||||||||||||||| |||||||||| ||||||| |||||    
T  17862026 aactttgcatatattatgcattgtccctaccaactgagctaaa 17861984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 461 - 511
Target Start/End: Original strand, 33899849 - 33899899
Alignment:
Q  461 gaacctcaaactttgcatatattatgtattgtccctatcaactgacctaaa 511  Q
    ||||||||||| | |||||||||||||||||| |||||||| ||| |||||    
T  33899849 gaacctcaaacatcgcatatattatgtattgttcctatcaattgagctaaa 33899899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 445 - 510
Target Start/End: Complemental strand, 20114776 - 20114711
Alignment:
Q  445 gtggtgttcggaattcgaacctcaaactttgcatatattatgtattgtccctatcaactgacctaa 510  Q
    |||||| |||| ||| ||||||||||||||| |||| ||||| ||||||| || ||||||| ||||    
T  20114776 gtggtggtcgggatttgaacctcaaactttgtatattttatgcattgtccttaccaactgagctaa 20114711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 448 - 505
Target Start/End: Original strand, 35773043 - 35773100
Alignment:
Q  448 gtgttcggaattcgaacctcaaactttgcatatattatgtattgtccctatcaactga 505  Q
    ||||||||| ||||||||||| ||||| |||||||| || ||| ||| ||||||||||    
T  35773043 gtgttcggagttcgaacctcacactttacatatattgtgcattatccttatcaactga 35773100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 473 - 510
Target Start/End: Original strand, 43702347 - 43702384
Alignment:
Q  473 ttgcatatattatgtattgtccctatcaactgacctaa 510  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  43702347 ttgcatatattatgtattgtccctatcaactgagctaa 43702384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 458 - 514
Target Start/End: Original strand, 29808271 - 29808327
Alignment:
Q  458 ttcgaacctcaaactttgcatatattatgtattgtccctatcaactgacctaaattc 514  Q
    |||||||| || || |||||||||||||| ||||||| |||||||||| ||||||||    
T  29808271 ttcgaaccccataccttgcatatattatgcattgtccttatcaactgatctaaattc 29808327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 445 - 505
Target Start/End: Complemental strand, 30380601 - 30380541
Alignment:
Q  445 gtggtgttcggaattcgaacctcaaactttgcatatattatgtattgtccctatcaactga 505  Q
    |||||| |||||||||||||| ||||| |||||||||||||  ||||||| || |||||||    
T  30380601 gtggtggtcggaattcgaaccccaaaccttgcatatattatacattgtccttaccaactga 30380541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 445 - 505
Target Start/End: Original strand, 46434750 - 46434810
Alignment:
Q  445 gtggtgttcggaattcgaacctcaaactttgcatatattatgtattgtccctatcaactga 505  Q
    |||||| ||||| || ||||||||||| || ||||||||||| ||||||| ||||||||||    
T  46434750 gtggtgatcggagtttgaacctcaaaccttacatatattatgcattgtccttatcaactga 46434810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 458 - 505
Target Start/End: Original strand, 19124625 - 19124672
Alignment:
Q  458 ttcgaacctcaaactttgcatatattatgtattgtccctatcaactga 505  Q
    ||||||||||| || |||||||||||||||||||||  ||||||||||    
T  19124625 ttcgaacctcagaccttgcatatattatgtattgtctttatcaactga 19124672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 457 - 511
Target Start/End: Original strand, 21052559 - 21052613
Alignment:
Q  457 attcgaacctcaaactttgcatatattatgtattgtccctatcaactgacctaaa 511  Q
    |||||||||||| || |||||||||||||||||| ||| || ||||||| |||||    
T  21052559 attcgaacctcataccttgcatatattatgtattatccataccaactgagctaaa 21052613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 452 - 493
Target Start/End: Complemental strand, 6520135 - 6520094
Alignment:
Q  452 tcggaattcgaacctcaaactttgcatatattatgtattgtc 493  Q
    ||||| |||||||||||||| |||||||||||||| ||||||    
T  6520135 tcggagttcgaacctcaaaccttgcatatattatgcattgtc 6520094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 445 - 510
Target Start/End: Complemental strand, 38416128 - 38416063
Alignment:
Q  445 gtggtgttcggaattcgaacctcaaactttgcatatattatgtattgtccctatcaactgacctaa 510  Q
    |||||||| || |||||||||||| || |||||||||||||| ||| ||| || ||||||| ||||    
T  38416128 gtggtgtttgggattcgaacctcataccttgcatatattatgcattatccttaccaactgagctaa 38416063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 472 - 505
Target Start/End: Original strand, 40847084 - 40847117
Alignment:
Q  472 tttgcatatattatgtattgtccctatcaactga 505  Q
    |||||||||||||||||||||| |||||||||||    
T  40847084 tttgcatatattatgtattgtctctatcaactga 40847117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 458 - 510
Target Start/End: Complemental strand, 1665 - 1613
Alignment:
Q  458 ttcgaacctcaaactttgcatatattatgtattgtccctatcaactgacctaa 510  Q
    ||||||||||| |  ||| ||||||||||||||||||||||||||| ||||||    
T  1665 ttcgaacctcataacttggatatattatgtattgtccctatcaactaacctaa 1613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0066 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: scaffold0066
Description:

Target: scaffold0066; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 445 - 511
Target Start/End: Complemental strand, 17575 - 17509
Alignment:
Q  445 gtggtgttcggaattcgaacctcaaactttgcatatattatgtattgtccctatcaactgacctaaa 511  Q
    ||||||| ||| ||||||||| ||||| |||||||||||||| ||||||| | ||| |||| |||||    
T  17575 gtggtgtccgggattcgaaccccaaaccttgcatatattatgcattgtccatgtcagctgagctaaa 17509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 31; Significance: 0.00000008; HSPs: 2)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 461 - 511
Target Start/End: Complemental strand, 63917 - 63867
Alignment:
Q  461 gaacctcaaactttgcatatattatgtattgtccctatcaactgacctaaa 511  Q
    ||||||||||||||| |||||||||  |||||||||| ||||||| |||||    
T  63917 gaacctcaaactttgtatatattatacattgtccctaccaactgagctaaa 63867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 461 - 511
Target Start/End: Complemental strand, 71249 - 71199
Alignment:
Q  461 gaacctcaaactttgcatatattatgtattgtccctatcaactgacctaaa 511  Q
    ||||||||||||||| |||||||||  |||||||||| ||||||| |||||    
T  71249 gaacctcaaactttgtatatattatacattgtccctaccaactgagctaaa 71199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 456 - 505
Target Start/End: Complemental strand, 14260 - 14211
Alignment:
Q  456 aattcgaacctcaaactttgcatatattatgtattgtccctatcaactga 505  Q
    |||| ||||||||||| || |||||||||||||||||  |||||||||||    
T  14260 aatttgaacctcaaaccttacatatattatgtattgttactatcaactga 14211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 452 - 505
Target Start/End: Complemental strand, 99101 - 99048
Alignment:
Q  452 tcggaattcgaacctcaaactttgcatatattatgtattgtccctatcaactga 505  Q
    ||||| || ||||| || || |||||||||||||| ||||||||||||||||||    
T  99101 tcggagtttgaaccccagaccttgcatatattatgcattgtccctatcaactga 99048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 470 - 511
Target Start/End: Original strand, 221028 - 221069
Alignment:
Q  470 actttgcatatattatgtattgtccctatcaactgacctaaa 511  Q
    ||||||||||||||||||||| |||||| ||||||| |||||    
T  221028 actttgcatatattatgtattatccctaccaactgagctaaa 221069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University