View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1720-Insertion-8 (Length: 891)
Name: NF1720-Insertion-8
Description: NF1720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1720-Insertion-8 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 595; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 595; E-Value: 0
Query Start/End: Original strand, 106 - 891
Target Start/End: Original strand, 3308616 - 3309415
Alignment:
| Q |
106 |
gaaattgttgaatattgaaggctagtgcttaacgtgcgtgatagtgtggaagggttgaaagcttcagtgtcaaggcaatgaaacgatgccgtattagtgg |
205 |
Q |
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| T |
3308616 |
gaaattgttgagtatagaaggccagtgcttaacgtgtgtcatagtgtggaagggttgaaagcttcagtgtcaaggcaatgaaacgatgccgtattagtgg |
3308715 |
T |
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| Q |
206 |
agaatgttattgcttggaaaaggagagagaatatgaactttctaggtgtatcaaagtagaaaagcaaagttgtaaagcatggattccaactacgtagacg |
305 |
Q |
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| T |
3308716 |
agaatgttattgcttggaaaaggagagagaatatgaactttctaggtgtatcaaagtagaaaagcaaagttgtaaagcatggattccaactacgtagacg |
3308815 |
T |
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| Q |
306 |
ttaaggtaacaaaacgatgccgttttggagtatatnnnnnnnnnnnnnnnnttagtttgagtatccaaactcaaactagcatatgttttttatgtataca |
405 |
Q |
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| T |
3308816 |
ttaaggtaacaaaacgatgccgttttggagtatataaaaaaaattaaaaaattagt--gagtatccaaactcaaagtagcatatgttttttatgtataca |
3308913 |
T |
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| Q |
406 |
ctccgacgagcaaatcataaatcacaaattaaacaactttagtatctggtatctatcatttatctctgac-attaacaatcatcttaattgatatatttt |
504 |
Q |
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| T |
3308914 |
ctgtgaagatcaaatcataaatcacagattaaacaactttagtatctggtatctatcatttatctctgacgattaacaatcatctcaattgatatatttt |
3309013 |
T |
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| Q |
505 |
ctgtatatgtattagcacgttaatgatgttaaacaaagcttaaagtcaaaag------tgaaagtttgtttgaatgtgcatggaattgcatctgttgact |
598 |
Q |
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| T |
3309014 |
ctatatatgtattagcacgttaacgatgttaaacaaagcttaaagtcaaaagtgaaagtgaaagtttgtttgaatgtgcatggaattgcacctgttgact |
3309113 |
T |
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| Q |
599 |
tggcaactgttggtgctggaactgtcgcgtcttaaaagtattgttatggatttctaaactatcgtatttgaattttcaagtctattttaaaaaatttaca |
698 |
Q |
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| T |
3309114 |
tggcagctgttggttctggaattgtcgcgtcttaaaagttttgttatggatttctaaactatcgtatttgaattttcaagtctattttaaaaaatttaca |
3309213 |
T |
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| Q |
699 |
atcaagtcgctctctttaagatgttttgtggcaccatttaaaattttgcaaggtagaaaattaaccatgttgcctccaagagacaatcaacta------- |
791 |
Q |
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| T |
3309214 |
atcaagtcgctctctttaagatgttttgtggcaccatttaaaattttgcaaggtagaaaattaaccatgttgcctccaagacacaatcaactacattgtt |
3309313 |
T |
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| Q |
792 |
-cactggagctaatcgttcgacaattacacctcaaatatggtactaattggaccactctttttaataccgaagctaatc-aatatgatacacaactctac |
889 |
Q |
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| T |
3309314 |
gcactggagctaatcgttcgacaattacacctcaaatatggtactaattggaccactctttttaataccgaagctaatcaaatatgatacacaactctac |
3309413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 7 - 72
Target Start/End: Original strand, 3308515 - 3308580
Alignment:
| Q |
7 |
agtaatgacggtctttacaacttgttatggcttcttcattctccgtttttgattggaaacaaccca |
72 |
Q |
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| T |
3308515 |
agtaatgacggtctttacaacttgttatggcttcttcattctccatttttgattggaaacaaccca |
3308580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 553 - 608
Target Start/End: Complemental strand, 3227842 - 3227787
Alignment:
| Q |
553 |
aaagtgaaagtttgtttgaatgtgcatggaattgcatctgttgacttggcaactgt |
608 |
Q |
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| T |
3227842 |
aaagtgaaagttcgtttgaatgtgcatggaattgcatctgttgacttggcaactgt |
3227787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 705 - 776
Target Start/End: Complemental strand, 19578495 - 19578424
Alignment:
| Q |
705 |
tcgctctctttaagatgttttgtggcaccatttaaaattttgcaaggtagaaaattaaccatgttgcctcca |
776 |
Q |
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| T |
19578495 |
tcgctctctttaagacgttttgtggcactacctaaaattgtgcaaggaagactatcaaccatgctgcctcca |
19578424 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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