View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1720-Insertion-9 (Length: 699)
Name: NF1720-Insertion-9
Description: NF1720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1720-Insertion-9 |
 | |
|
| [»] chr1 (3 HSPs) |
| |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 103 - 346
Target Start/End: Original strand, 16547131 - 16547374
Alignment:
| Q |
103 |
caacacaagcacaagcaatgaagactttgcttcaagactaaaaaagcttcacgagttgcatgatgttcagggtgcctcaaaagtaaacgagactaagaat |
202 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |||||||| |||| ||||||||||||||||| |||||||||||| |
|
|
| T |
16547131 |
caacacaagcacaagcaatgaagactttgcttcaagaataaaaaagcttcgcgagctgcatgatattcaaggtgcctcaaaagtaaaagagactaagaat |
16547230 |
T |
|
| Q |
203 |
aatggtgcccaagtctctaaagctgaaaatcaaggagaggatgaaggtcatcgacatggcgatcatcatggcggaggagggcatggaggcggcgaaggag |
302 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16547231 |
aatggtgcccaagtctctaaagctgaaaatcaaggagaggatgaaggtcattgacatggcgatcatcatggcggaggagggcatggaggcggcgaaggag |
16547330 |
T |
|
| Q |
303 |
atggtggagagtccgtccaaagattatagttactatatattctg |
346 |
Q |
| |
|
|||||||||||||||||| ||||| |||||||| |||||||||| |
|
|
| T |
16547331 |
atggtggagagtccgtcctaagatcatagttaccatatattctg |
16547374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 525 - 656
Target Start/End: Original strand, 23556019 - 23556151
Alignment:
| Q |
525 |
gtgctatatggtgcgacaagctgcacactaattacacgagagaatggctgatcccaccatccagtttcctttttatatta-nnnnnnngatattaacatt |
623 |
Q |
| |
|
||||||||||||||||||||| ||||| |||| ||||||||||||||||| ||||||||||| |||||||||||||||| ||||||||||| |
|
|
| T |
23556019 |
gtgctatatggtgcgacaagcaccacacgaattgcacgagagaatggctgaccccaccatccaatttcctttttatattatttttttttatattaacatt |
23556118 |
T |
|
| Q |
624 |
aaaatgaataaataaacaaatatatggcagaga |
656 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| |
|
|
| T |
23556119 |
aaaatgaataaataaacaaatatatggaagaga |
23556151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 529 - 656
Target Start/End: Complemental strand, 9842630 - 9842503
Alignment:
| Q |
529 |
tatatggtgcgacaagctgcacactaattacacgagagaatggctgatcccaccatccagtttcctttttatattannnnnnngatattaacattaaaat |
628 |
Q |
| |
|
|||||||||| |||||| |||| |||| ||||||||||||||||| ||||||||||| |||||||||||||||| |||| |||||||||||| |
|
|
| T |
9842630 |
tatatggtgcaacaagcaccacatgaattgcacgagagaatggctgaccccaccatccaatttcctttttatattatttttttgataataacattaaaat |
9842531 |
T |
|
| Q |
629 |
gaataaataaacaaatatatggcagaga |
656 |
Q |
| |
|
||||||||||| |||||||||| ||||| |
|
|
| T |
9842530 |
gaataaataaataaatatatggaagaga |
9842503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 46
Target Start/End: Original strand, 16547100 - 16547138
Alignment:
| Q |
8 |
tatacataccctagaactttgtgtcaaatcacaacacaa |
46 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
16547100 |
tatatataccctagaactttgtgtcaaatcacaacacaa |
16547138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 114; Significance: 2e-57; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 525 - 699
Target Start/End: Original strand, 41697788 - 41697962
Alignment:
| Q |
525 |
gtgctatatggtgcgacaagctgcacactaattacacgagagaatggctgatcccaccatccagtttcctttttatattannnnnnngatattaacatta |
624 |
Q |
| |
|
||||||||||||||||||||| ||||| |||||||||||||||||||||| ||||||||||| |||||||||||||||| ||||||||||||| |
|
|
| T |
41697788 |
gtgctatatggtgcgacaagcaccacacgaattacacgagagaatggctgaccccaccatccaatttcctttttatattatttttttgatattaacatta |
41697887 |
T |
|
| Q |
625 |
aaatgaataaataaacaaatatatggcagagatgatcaccgcacgcactttcttcttcataaccttatgttctga |
699 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| |||| ||||||||||| |||||||||||||||||| |
|
|
| T |
41697888 |
aaatgaataaataaacaaatatatggcagagacaatcacggcacacactttcttctccataaccttatgttctga |
41697962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 525 - 699
Target Start/End: Original strand, 41703382 - 41703556
Alignment:
| Q |
525 |
gtgctatatggtgcgacaagctgcacactaattacacgagagaatggctgatcccaccatccagtttcctttttatattannnnnnngatattaacatta |
624 |
Q |
| |
|
||||||||||||||||||||| ||||| |||||||||||||||||||||| ||||||||||| |||||||||||||||| ||||||||||||| |
|
|
| T |
41703382 |
gtgctatatggtgcgacaagcaccacacgaattacacgagagaatggctgaccccaccatccaatttcctttttatattatttttttgatattaacatta |
41703481 |
T |
|
| Q |
625 |
aaatgaataaataaacaaatatatggcagagatgatcaccgcacgcactttcttcttcataaccttatgttctga |
699 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| |||| ||||||||||| |||||||||||||||||| |
|
|
| T |
41703482 |
aaatgaataaataaacaaatatatggcagagacaatcacggcacacactttcttctccataaccttatgttctga |
41703556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 525 - 656
Target Start/End: Original strand, 8017230 - 8017361
Alignment:
| Q |
525 |
gtgctatatggtgcgacaagctgcacactaattacacgagagaatggctgatcccaccatccagtttcctttttatattannnnnnngatattaacatta |
624 |
Q |
| |
|
|||| |||||||||||| ||| ||||| |||| |||||||||||||| || ||||||||||| |||||||||||||||| ||||||||||||| |
|
|
| T |
8017230 |
gtgcaatatggtgcgacgagcaccacacgaattgcacgagagaatggcggaccccaccatccaatttcctttttatattatttttttgatattaacatta |
8017329 |
T |
|
| Q |
625 |
aaatgaataaataaacaaatatatggcagaga |
656 |
Q |
| |
|
||||||||||||||| || ||||||| ||||| |
|
|
| T |
8017330 |
aaatgaataaataaataagtatatggaagaga |
8017361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 110; Significance: 5e-55; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 110; E-Value: 5e-55
Query Start/End: Original strand, 525 - 699
Target Start/End: Complemental strand, 54079162 - 54078988
Alignment:
| Q |
525 |
gtgctatatggtgcgacaagctgcacactaattacacgagagaatggctgatcccaccatccagtttcctttttatattannnnnnngatattaacatta |
624 |
Q |
| |
|
||||||||||||||||||||| ||||| |||||||||||||||||||||| ||||||||||| |||||||||||||||| ||||||||||||| |
|
|
| T |
54079162 |
gtgctatatggtgcgacaagcaccacacgaattacacgagagaatggctgaccccaccatccaatttcctttttatattatttttttgatattaacatta |
54079063 |
T |
|
| Q |
625 |
aaatgaataaataaacaaatatatggcagagatgatcaccgcacgcactttcttcttcataaccttatgttctga |
699 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| ||| ||||||||||| |||||||||||||||||| |
|
|
| T |
54079062 |
aaatgaataaataaacaaatatatggcagagacaatcacgacacacactttcttctccataaccttatgttctga |
54078988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 7e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 525 - 648
Target Start/End: Complemental strand, 42434963 - 42434840
Alignment:
| Q |
525 |
gtgctatatggtgcgacaagctgcacactaattacacgagagaatggctgatcccaccatccagtttcctttttatattannnnnnngatattaacatta |
624 |
Q |
| |
|
|||||||||| |||||||||| | ||| |||| |||||||||||| |||| | || ||||| |||||||||||||||| ||||||||||||| |
|
|
| T |
42434963 |
gtgctatatgatgcgacaagcaccgcacgaattgcacgagagaatgactgaccaaactatccaatttcctttttatattatttttttgatattaacatta |
42434864 |
T |
|
| Q |
625 |
aaatgaataaataaacaaatatat |
648 |
Q |
| |
|
||||||||||||||| |||||||| |
|
|
| T |
42434863 |
aaatgaataaataaataaatatat |
42434840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University