View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17200_low_1 (Length: 707)
Name: NF17200_low_1
Description: NF17200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17200_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 575; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 575; E-Value: 0
Query Start/End: Original strand, 10 - 692
Target Start/End: Original strand, 15576297 - 15576983
Alignment:
| Q |
10 |
tattatcactataagtcatacccgagatttccgcttcgcttcttctctcagttgtcgttgtacgttgtattcatccaagctattcaacaacagaacctga |
109 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15576297 |
tattatcactataagtcatacccgagatttccgcttctcttcttctctcagttgtcgttgtacgttgtattcatccaagctattcaacaacagaacctga |
15576396 |
T |
|
| Q |
110 |
aataattttgagtcagaacctgactaatcattctgcatattatagtcaataacatagtatagtcatcatcaccttttcgtataagaaaggtattcctttt |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
15576397 |
aataattttgagtcagaacctgactaatcattctgcatattatagtcaataacatagtatagtcatcatcaccttttcatataagaaaggtattcctttt |
15576496 |
T |
|
| Q |
210 |
tccgtctcccatgctttcactttcgcagtcaaattctcaaccacagctgctcagtaaaaaattgtaaggaaagttacttttaaacaaatgaggaaactag |
309 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
15576497 |
tccgtctcccatgctttcacttttgcagtcaaattctcaaccacagctgctcagtaaaaaattggaaggaaagttacttttaaacaaatgaggaaactag |
15576596 |
T |
|
| Q |
310 |
catcatgataatactacaagttacaacctaaaggaaactaagcaattatatagg-nnnnnnnnctcaatacataattattttaagtttgccagctattga |
408 |
Q |
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||||||||||||||||||||||||||||| ||| |||||||| ||||||||| ||||| |||||| |||||||||||||||||||||||| |
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| T |
15576597 |
catcatgataatactacaagttacaacct--agg--actaagcacttatataggtttttttttctcaaaacataactattttaagtttgccagctattga |
15576692 |
T |
|
| Q |
409 |
acgtaaaataaaggttttcacttattaacttgaccaatttctattccaaatccaataatggaaatttgaaaaataactaaattgtaactttggcgctgct |
508 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
15576693 |
acgtaaaataaaggttttcacttattaacttgaccaatttctattccaaatccaataatggaaatttgaaaaataattaaattgtaactttggcgctgct |
15576792 |
T |
|
| Q |
509 |
tcttactaaaattctacaaagaaatccatagcctagttgaccttaatttactattttaacccggtgagtgtaaacactttctatcatcaaacagaaaatc |
608 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
15576793 |
tcttactaaaattctacaaagaaatccatagcctagttgaccttaatttactattttaatccggtgagtgtaaacactttctatcatcaaacagaaaatc |
15576892 |
T |
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| Q |
609 |
ttcagataaaatgaaatatcaaacttcaagcagacacgagcttcagaaaatcttttga-------acatatataaaatgatgatcatcttg |
692 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
15576893 |
ttcagataaaatgaaatatcaaacttcaagcagacacgagcttcagaaaatcttttgaacaacatacatatataaaatgatgatcatcttg |
15576983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 156; E-Value: 2e-82
Query Start/End: Original strand, 21 - 279
Target Start/End: Complemental strand, 8338318 - 8338062
Alignment:
| Q |
21 |
taagtcatacccgagatttccgcttcgcttcttctctcagttgtcgttgtacgttgtattcatccaagctattcaacaacagaacctgaaataattttga |
120 |
Q |
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||||||||||||||||||| |||||| |||||||||||||||| | ||||||||||||||||| |||||||||||| || ||||||||||||||| || |
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| T |
8338318 |
taagtcatacccgagattttcgcttctcttcttctctcagttgcctttgtacgttgtattcatgcaagctattcaataatggaacctgaaataatt--ga |
8338221 |
T |
|
| Q |
121 |
gtcagaacctgactaatcattctgcatattatagtcaataacatagtatagtcatcatcaccttttcgtataagaaaggtattcctttttccgtctccca |
220 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | || ||| | |||||||| |
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| T |
8338220 |
gtcagaacctgactaatcattctgcatattatagtcaataacatagtatagtcatcatcaccttttcatataagaaacttttttcttcgtttgtctccca |
8338121 |
T |
|
| Q |
221 |
tgctttcactttcgcagtcaaattctcaaccacagctgctcagtaaaaaattgtaagga |
279 |
Q |
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|| ||||||||| | |||||||||||| |||| |||||||||||||||||||| ||||| |
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| T |
8338120 |
tgttttcacttttgtagtcaaattctctaccatagctgctcagtaaaaaattggaagga |
8338062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 396 - 601
Target Start/End: Complemental strand, 8337851 - 8337645
Alignment:
| Q |
396 |
tgccagctattgaacgtaaaataaaggttttcacttattaacttgaccaatttctattccaaatccaataat-ggaaatttgaaaaataactaaattgta |
494 |
Q |
| |
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||||| || ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||| |||||| | ||||||| |
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| T |
8337851 |
tgccaacttttgaacgtaaaataaaggttttcacttattaacatgacccatttctattccaaatccaataattggaaatccgaaaaaaataacaattgta |
8337752 |
T |
|
| Q |
495 |
actttggcgctgcttcttactaaaattctacaaagaaatccatagcctagttgaccttaatttactattttaacccggtgagtgtaaacactttctatca |
594 |
Q |
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|||| | ||||||||||||||||||| |||||| ||||| || ||||||||||||||||||||||||||| |||| ||||||||||||||||| || || |
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| T |
8337751 |
acttcgatgctgcttcttactaaaattttacaaaaaaatcaatggcctagttgaccttaatttactattttcacccagtgagtgtaaacactttatacca |
8337652 |
T |
|
| Q |
595 |
tcaaaca |
601 |
Q |
| |
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|| |||| |
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|
| T |
8337651 |
tccaaca |
8337645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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