View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17200_low_2 (Length: 504)
Name: NF17200_low_2
Description: NF17200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17200_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 430; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 6 - 488
Target Start/End: Complemental strand, 41106063 - 41105581
Alignment:
| Q |
6 |
gtcgaagaatatgcaactttatgggattgtgaaaatttaagttgaaattagtcaatgttggtgcaagttaaaggtatgattacttgcgtcaagcactaat |
105 |
Q |
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| T |
41106063 |
gtcgatgaacatgcaagtttatgggattgtgaaaatttaagttgaaattagtcaatgttggtgcaagttaatggtatgattacttgcgtcaaccactaat |
41105964 |
T |
|
| Q |
106 |
aaactaaatataaatccatccattaaaagaatgtgatgccatatattatgtgacagccatgcagacagcaaattaggcctaaaataaagaacgtactcgt |
205 |
Q |
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|||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41105963 |
aaactaaatataaatctatccattaaaagaatgtcatgccatatattatgtgacagccatgcagacagcaaattaggcctaaaataaagaacgtactcgt |
41105864 |
T |
|
| Q |
206 |
agtacttatctagctctacgaacacagtaccgcgtagaagaagattaaggatgaaaccgacgcgtctaaattgcattaaatgatttgtcgcatnnnnnnn |
305 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41105863 |
agtacttatctagctctacgaacacagtaccgcgtagaagaagattaaggatgaaaccgacgcgtctaaattgcattaaatgatttgtcgcataaaaaaa |
41105764 |
T |
|
| Q |
306 |
cacggtatgaatatgacatgtactatagatagtctaaggttattagaaaatgaaattagaaacttcgtgtgtttttcctttcaccaaaaataaagctact |
405 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41105763 |
cacggtatgaatatgacatgtactatagatagtcttaggttattagaaaatgaaattagaaacttcgtgtgtttttcctttcaccaaaaataaagctact |
41105664 |
T |
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| Q |
406 |
ttataaaatcccactcactctacaatattcaacactttgtaaattaactgaaacttccaaatcatagattgtacgtatttatt |
488 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41105663 |
ttataaaatcccactcactctacaatattcaacactttgtaaattaactgaaacttccaaatcatagattgtacgtatttatt |
41105581 |
T |
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