View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17200_low_3 (Length: 379)

Name: NF17200_low_3
Description: NF17200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17200_low_3
NF17200_low_3
[»] chr4 (20 HSPs)
chr4 (1-372)||(17605347-17605718)
chr4 (153-361)||(17632088-17632296)
chr4 (170-366)||(16480383-16480579)
chr4 (154-280)||(16480568-16480694)
chr4 (104-357)||(17645582-17645832)
chr4 (104-334)||(17650022-17650252)
chr4 (2-91)||(17631931-17632020)
chr4 (104-322)||(17663819-17664037)
chr4 (3-91)||(16480763-16480851)
chr4 (104-334)||(17676098-17676328)
chr4 (169-361)||(18766732-18766924)
chr4 (100-195)||(16481154-16481249)
chr4 (2-91)||(17645429-17645518)
chr4 (104-224)||(17645036-17645156)
chr4 (2-84)||(29880324-29880406)
chr4 (302-366)||(16475525-16475589)
chr4 (16-84)||(29883363-29883431)
chr4 (16-91)||(20751436-20751511)
chr4 (16-84)||(17676399-17676467)
chr4 (24-84)||(17664108-17664168)
[»] chr8 (1 HSPs)
chr8 (170-220)||(32670080-32670130)


Alignment Details
Target: chr4 (Bit Score: 348; Significance: 0; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 1 - 372
Target Start/End: Original strand, 17605347 - 17605718
Alignment:
Q  1 gttcaagacccaacaatgaactttgatgattcaagaggtaaccagtttaacctttaccctcttcaaccacaagtattaaacaatataaatggcactaatc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17605347 gttcaagacccaacaatgaactttgatgattcaagaggtaaccagtttaacctttaccctcttcaaccacaagtattaaacaatataaatggcactaatc 17605446  T
Q  101 aaattgtgaatggtttccattcttcacaaacaaatggcattaatgaacttgggaatggtttcccttcgacacaaacaaatgtgtctaatccttcagtatc 200  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  17605447 aaattgtgaatggtttccattcttcacaaacaaatgtcattaatgaacttgtgaatggtttcccttcgacacaaacaaatgtgtctaatccttcagtatc 17605546  T
Q  201 tctgaatgctaccaacccaactttccatatgaacgaccgtaacctacctgtgattggtttttcttcctcacaaacaaatgaccccctatcaccaacttct 300  Q
    ||||||||||||||||||||||||  |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17605547 tctgaatgctaccaacccaactttttatatgaacgaccgtaaccaacctgtgattggtttttcttcctcacaaacaaatgaccccctatcaccaacttct 17605646  T
Q  301 aaatttatgttgccatcaccgaagagtaacatgattttcatatccccccaatcaccttataagcctttgcta 372  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  17605647 aaatttatgttgccatcaccgaagagtaacatgaatttcatatccccccaatcaccttataagcctttgcta 17605718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 153 - 361
Target Start/End: Original strand, 17632088 - 17632296
Alignment:
Q  153 gaatggtttcccttcgacacaaacaaatgtgtctaatccttcagtatctctgaatgctaccaacccaactttccatatgaacgaccgtaacctacctgtg 252  Q
    ||||||||||||||| ||||||| |||| |||||||||||||||| ||||||||||||||||| |||||| ||  ||||||||||  ||||| || ||||    
T  17632088 gaatggtttcccttcaacacaaataaatatgtctaatccttcagtgtctctgaatgctaccaatccaactctctctatgaacgacaataaccaacttgtg 17632187  T
Q  253 attggtttttcttcctcacaaacaaatgaccccctatcaccaacttctaaatttatgttgccatcaccgaagagtaacatgattttcatatccccccaat 352  Q
    |||| ||||||||||||||||||||||||||||||||||||||||| | ||||||| ||||| |||||  | | |||||||| |||| |||||||||| |    
T  17632188 attgatttttcttcctcacaaacaaatgaccccctatcaccaacttttgaatttatattgccttcaccagaaaataacatgaatttcctatccccccagt 17632287  T
Q  353 caccttata 361  Q
    |||||||||    
T  17632288 caccttata 17632296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 170 - 366
Target Start/End: Complemental strand, 16480579 - 16480383
Alignment:
Q  170 cacaaacaaatgtgtctaatccttcagtatctctgaatgctaccaacccaactttccatatgaacgaccgtaacctacctgtgattggtttttcttcctc 269  Q
    |||||||||||||||||||| |||| ||  |||||||||||||||| |||||||| | |||||||||  |||||| ||||||||||||||||||||||||    
T  16480579 cacaaacaaatgtgtctaattcttcggtgactctgaatgctaccaatccaactttgcctatgaacgatagtaaccaacctgtgattggtttttcttcctc 16480480  T
Q  270 acaaacaaatgaccccctatcaccaacttctaaatttatgttgccatcaccgaagagtaacatgattttcatatccccccaatcaccttataagcct 366  Q
    ||||||||||||||||| |||||||| || | ||||||||||||| |||||||| |  ||||||| |||| |||||||||| |||||||||| ||||    
T  16480479 acaaacaaatgaccccccatcaccaaattttgaatttatgttgccttcaccgaaaaacaacatgaatttcctatccccccagtcaccttataggcct 16480383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 154 - 280
Target Start/End: Complemental strand, 16480694 - 16480568
Alignment:
Q  154 aatggtttcccttcgacacaaacaaatgtgtctaatccttcagtatctctgaatgctaccaacccaactttccatatgaacgaccgtaacctacctgtga 253  Q
    |||||||| ||||| ||||||||||||||||||||| |||||||  |||||||||||||||| |||||||| | |||||||| | |||||| ||||||||    
T  16480694 aatggttttccttcaacacaaacaaatgtgtctaattcttcagtgactctgaatgctaccaatccaactttgcctatgaacggcagtaaccaacctgtga 16480595  T
Q  254 ttggtttttcttcctcacaaacaaatg 280  Q
    |||||||||||||||||||||||||||    
T  16480594 ttggtttttcttcctcacaaacaaatg 16480568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 104 - 357
Target Start/End: Original strand, 17645582 - 17645832
Alignment:
Q  104 ttgtgaatggtttccattcttcacaaacaaatggcattaatgaacttgggaatggtttcccttcgacacaaacaaatgtgtctaatccttcagtatctct 203  Q
    |||| |||||||| |||||||||||||||||||| | |||  |||||| ||||||||| ||||| ||||||||||||||||||||||||||||| | |||    
T  17645582 ttgttaatggttttcattcttcacaaacaaatggtagtaaccaacttgtgaatggttttccttcaacacaaacaaatgtgtctaatccttcagtgtttct 17645681  T
Q  204 gaatgctaccaacccaactttccatatgaacgaccgtaacctacctgtgattggtttttcttcctcacaaacaaatgaccccctatcaccaacttctaaa 303  Q
    ||||||||| |   ||||||| | ||||||     | ||||  | ||||| ||| | |||||||||||||||    || || ||||||| ||||||| ||    
T  17645682 gaatgctacgagttcaactttgcctatgaatataagcaaccagcttgtgaatggatattcttcctcacaaac---ggaacctctatcacaaacttctgaa 17645778  T
Q  304 tttatgttgccatcaccgaagagtaacatgattttcatatccccccaatcacct 357  Q
    ||||||||| | ||||| || |||||||||| |   |||||||| |||||||||    
T  17645779 tttatgttgacttcaccaaaaagtaacatgaatcatatatcccctcaatcacct 17645832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 104 - 334
Target Start/End: Original strand, 17650022 - 17650252
Alignment:
Q  104 ttgtgaatggtttccattcttcacaaacaaatggcattaatgaacttgggaatggtttcccttcgacacaaacaaatgtgtctaatccttcagtatctct 203  Q
    ||||||||||||||||| | ||||||||||||| || |||  || ||| ||||||||||||||| ||||||  ||| ||||||||||||||| | ||||     
T  17650022 ttgtgaatggtttccatgcctcacaaacaaatgacaataaccaagttgtgaatggtttcccttcaacacaagaaaacgtgtctaatccttcaatgtctcc 17650121  T
Q  204 gaatgctaccaacccaactttccatatgaacgaccgtaacctacctgtgattggtttttcttcctcacaaacaaatgaccccctatcaccaacttctaaa 303  Q
    || |||||||||  | | ||||| | ||||| || |||||| || ||||| ||| ||   ||||||||||||||||| |||   ||||||||||||| ||    
T  17650122 gattgctaccaattcgaatttccttgtgaacaacagtaaccaacttgtgaatgggttcctttcctcacaaacaaatggccctagatcaccaacttctgaa 17650221  T
Q  304 tttatgttgccatcaccgaagagtaacatga 334  Q
    ||| | ||| | |||||||| ||||||||||    
T  17650222 tttttattgtcttcaccgaatagtaacatga 17650252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 2 - 91
Target Start/End: Original strand, 17631931 - 17632020
Alignment:
Q  2 ttcaagacccaacaatgaactttgatgattcaagaggtaaccagtttaacctttaccctcttcaaccacaagtattaaacaatataaatg 91  Q
    |||||||||||| ||||||||||||||||||||||| ||||| |||| | |||||||||  ||||||||||||||| ||||| |||||||    
T  17631931 ttcaagacccaataatgaactttgatgattcaagagttaacccgtttcaactttaccctgctcaaccacaagtattcaacaacataaatg 17632020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 104 - 322
Target Start/End: Complemental strand, 17664037 - 17663819
Alignment:
Q  104 ttgtgaatggtttccattcttcacaaacaaatggcattaatgaacttgggaatggtttcccttcgacacaaacaaatgtgtctaatccttcagtatctct 203  Q
    ||||||||||||||||| | ||||||||||||| || |||  |||||| ||||||||||||||  ||||||  ||| ||||||||||||| | | ||| |    
T  17664037 ttgtgaatggtttccatacctcacaaacaaatgacaataaccaacttgtgaatggtttccctttaacacaagaaaacgtgtctaatcctttaatgtctat 17663938  T
Q  204 gaatgctaccaacccaactttccatatgaacgaccgtaacctacctgtgattggtttttcttcctcacaaacaaatgaccccctatcaccaacttctaaa 303  Q
    |  ||||||||| || |  |||| | ||||| |  |||||  || ||| | ||||||  ||||| |||||||||||| ||| | ||||||||||||| ||    
T  17663937 ggttgctaccaatccgaagttccttgtgaacaatagtaacaaacttgtcaatggtttcccttccacacaaacaaatggccctcgatcaccaacttctgaa 17663838  T
Q  304 tttatgttgccatcaccga 322  Q
    ||| ||||| | |||||||    
T  17663837 tttttgttgtcttcaccga 17663819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 3 - 91
Target Start/End: Complemental strand, 16480851 - 16480763
Alignment:
Q  3 tcaagacccaacaatgaactttgatgattcaagaggtaaccagtttaacctttaccctcttcaaccacaagtattaaacaatataaatg 91  Q
    ||||||||| |||||||| |||||| |||||||||||||||| ||| |  ||| ||||| ||||||||||||||| |||||||||||||    
T  16480851 tcaagaccctacaatgaaatttgattattcaagaggtaaccaatttcaagtttgccctcctcaaccacaagtattcaacaatataaatg 16480763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 104 - 334
Target Start/End: Complemental strand, 17676328 - 17676098
Alignment:
Q  104 ttgtgaatggtttccattcttcacaaacaaatggcattaatgaacttgggaatggtttcccttcgacacaaacaaatgtgtctaatccttcagtatctct 203  Q
    |||||||| |||||||| | || |||||||||| || |||  || ||| ||||||||||||||| |||||   ||||||| ||||||||||  | |||||    
T  17676328 ttgtgaatagtttccatgcctcccaaacaaatgacaataaccaagttgtgaatggtttcccttcaacacatgaaaatgtgcctaatccttctatgtctct 17676229  T
Q  204 gaatgctaccaacccaactttccatatgaacgaccgtaacctacctgtgattggtttttcttcctcacaaacaaatgaccccctatcaccaacttctaaa 303  Q
     | |||||||||  | | ||||| | ||||| |  |||||| || ||||| ||||||   |||||||||||| |||| ||| | ||| ||||||||| ||    
T  17676228 tattgctaccaattcgaatttccttgtgaacaatagtaaccaacttgtgaatggtttcctttcctcacaaaccaatggccctcgatctccaacttctgaa 17676129  T
Q  304 tttatgttgccatcaccgaagagtaacatga 334  Q
    ||| | ||| | |||||||| ||||||||||    
T  17676128 tttttattgtcttcaccgaatagtaacatga 17676098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 169 - 361
Target Start/End: Original strand, 18766732 - 18766924
Alignment:
Q  169 acacaaacaaatgtgtctaatccttcagtatctctgaatgctaccaacccaactttccatatgaacgaccgtaacctacctgtgattggtttttcttcct 268  Q
    ||||||| | |||||||||||| ||||||  || | ||| ||||||| |||| ||||| ||||||||||  ||||| || | ||| ||||||  ||||||    
T  18766732 acacaaaaagatgtgtctaatctttcagttccttttaatcctaccaatccaattttccctatgaacgacaataaccaacttttgaatggtttcccttcct 18766831  T
Q  269 cacaaacaaatgaccccctatcaccaacttctaaatttatgttgccatcaccgaagagtaacatgattttcatatccccccaatcaccttata 361  Q
    |||||| ||||| ||| | ||||  ||||||| | ||| |||||||||||    | |||||||||| ||| |||||||| || ||||||||||    
T  18766832 cacaaaaaaatggccctcgatcattaacttctgagtttttgttgccatcattagaaagtaacatgaattttatatcccctcagtcaccttata 18766924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 100 - 195
Target Start/End: Complemental strand, 16481249 - 16481154
Alignment:
Q  100 caaattgtgaatggtttccattcttcacaaacaaatggcattaatgaacttgggaatggtttcccttcgacacaaacaaatgtgtctaatccttca 195  Q
    |||||||||||| |||||||||| |||||||||||||  | |||  |||||  ||||||||| ||||| | |||||||||| || |||||||||||    
T  16481249 caaattgtgaattgtttccattcctcacaaacaaatgctaataaccaacttctgaatggttttccttcaatacaaacaaatatggctaatccttca 16481154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 91
Target Start/End: Original strand, 17645429 - 17645518
Alignment:
Q  2 ttcaagacccaacaatgaactttgatgattcaagaggtaaccagtttaacctttaccctcttcaaccacaagtattaaacaatataaatg 91  Q
    ||||||| |||||| ||||||| | | |||||||||||||||||||| | || |  |||| ||||||| ||||||| |||||||||||||    
T  17645429 ttcaagatccaacattgaacttgggtaattcaagaggtaaccagtttcaactatggcctcctcaaccaaaagtattcaacaatataaatg 17645518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 104 - 224
Target Start/End: Original strand, 17645036 - 17645156
Alignment:
Q  104 ttgtgaatggtttccattcttcacaaacaaatggcattaatgaacttgggaatggtttcccttcgacacaaacaaatgtgtctaatccttcagtatctct 203  Q
    ||||||||||| | ||||| ||||||||||||  || |||  |||||| ||| || |||||||| ||||||||||||||||| |||| ||||   ||| |    
T  17645036 ttgtgaatggtattcattcctcacaaacaaattacagtaaccaacttgtgaaaggcttcccttcaacacaaacaaatgtgtccaatctttcaacgtcttt 17645135  T
Q  204 gaatgctaccaacccaacttt 224  Q
      |||||||||| ||||||||    
T  17645136 tcatgctaccaatccaacttt 17645156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 84
Target Start/End: Complemental strand, 29880406 - 29880324
Alignment:
Q  2 ttcaagacccaacaatgaactttgatgattcaagaggtaaccagtttaacctttaccctcttcaaccacaagtattaaacaat 84  Q
    ||||| || |||| |||||||||||| |||||||||||||||| ||| |   |||||||| |||| |||||||||| ||||||    
T  29880406 ttcaaaactcaacgatgaactttgataattcaagaggtaaccaatttcagtcttaccctcctcaatcacaagtattgaacaat 29880324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 302 - 366
Target Start/End: Complemental strand, 16475589 - 16475525
Alignment:
Q  302 aatttatgttgccatcaccgaagagtaacatgattttcatatccccccaatcaccttataagcct 366  Q
    ||||||||||||| |||||||| |  ||||||| |||| |||||||||| |||||||||| ||||    
T  16475589 aatttatgttgccttcaccgaaaaacaacatgaatttcctatccccccagtcaccttataggcct 16475525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 84
Target Start/End: Original strand, 29883363 - 29883431
Alignment:
Q  16 atgaactttgatgattcaagaggtaaccagtttaacctttaccctcttcaaccacaagtattaaacaat 84  Q
    ||||||||||||  ||||||||||||||||||| | | |||||||  |||| |||||||||| ||||||    
T  29883363 atgaactttgatagttcaagaggtaaccagtttcaaccttaccctactcaatcacaagtattgaacaat 29883431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 16 - 91
Target Start/End: Complemental strand, 20751511 - 20751436
Alignment:
Q  16 atgaactttgatgattcaagaggtaaccagtttaacctttaccctcttcaaccacaagtattaaacaatataaatg 91  Q
    |||| ||||||| |||||  ||||||||| ||| | | |||||||| |||||||||| |||| |||||||||||||    
T  20751511 atgagctttgataattcagaaggtaaccattttcaaccttaccctcatcaaccacaattattcaacaatataaatg 20751436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 17676467 - 17676399
Alignment:
Q  16 atgaactttgatgattcaagaggtaaccagttt-aacctttaccctcttcaaccacaagtattaaacaat 84  Q
    ||||||| |||  |||||||||||||||||||| ||||||| ||||| ||||||||||||| | ||||||    
T  17676467 atgaactatgacaattcaagaggtaaccagtttcaaccttt-ccctcatcaaccacaagtagtcaacaat 17676399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 24 - 84
Target Start/End: Complemental strand, 17664168 - 17664108
Alignment:
Q  24 tgatgattcaagaggtaaccagtttaacctttaccctcttcaaccacaagtattaaacaat 84  Q
    |||| |||||||||||||||||||| |    ||||||| ||||||||||||||| ||||||    
T  17664168 tgataattcaagaggtaaccagtttcaaacctaccctcatcaaccacaagtattcaacaat 17664108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 170 - 220
Target Start/End: Original strand, 32670080 - 32670130
Alignment:
Q  170 cacaaacaaatgtgtctaatccttcagtatctctgaatgctaccaacccaa 220  Q
    |||||||| || |||||||||||||||| ||||||||||||||||||||||    
T  32670080 cacaaacatatctgtctaatccttcagtgtctctgaatgctaccaacccaa 32670130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University