View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17201_high_10 (Length: 271)
Name: NF17201_high_10
Description: NF17201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17201_high_10 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 38983708 - 38983983
Alignment:
| Q |
1 |
ctatcaatatcagtaaatccatcaactctcggatggaacttgaaaaccggcctttctctactcaaaagaatctagagaatgaaggagctaaagataatga |
100 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38983708 |
ctatcaatatcagtaaatccactgactctcggatggaacttgaaaaccggcctttctctactcaaaagaatctagagaatgaaggagctaaagataatga |
38983807 |
T |
|
| Q |
101 |
gaatgttacagtaatcatgaagtatatgagttcaggtcctgctattacattgcaagatgcgaattca------------ggtcttcacaactcatttgac |
188 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |
|
|
| T |
38983808 |
gaatgttacagtaatcatgaaggatatgagttcaggtcctgctattacattgcaagatgcgaattcagatcctgctttggctcttcacaactcatttgac |
38983907 |
T |
|
| Q |
189 |
attctacatgaggatagtgaactttcttttagggagacttctctagtggatcagagactaagtaacagctcctatg |
264 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
38983908 |
attctacatgaggatagtgaactttcttttagggagacttctctagtggatcagggactaagtaacagctcctatg |
38983983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 242
Target Start/End: Original strand, 51524174 - 51524246
Alignment:
| Q |
170 |
tcttcacaactcatttgacattctacatgaggatagtgaactttcttttagggagacttctctagtggatcag |
242 |
Q |
| |
|
|||||||||||||||||||| |||||||||| | |||| || ||||| |||||||| | |||||||||||| |
|
|
| T |
51524174 |
tcttcacaactcatttgacaagttacatgaggacaatgaagttccttttggggagactccactagtggatcag |
51524246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 121
Target Start/End: Original strand, 51524065 - 51524113
Alignment:
| Q |
73 |
tagagaatgaaggagctaaagataatgagaatgttacagtaatcatgaa |
121 |
Q |
| |
|
||||||| ||||||||||||||| ||| || ||| |||||||||||||| |
|
|
| T |
51524065 |
tagagaaggaaggagctaaagatgatgtgactgtgacagtaatcatgaa |
51524113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University