View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17201_high_2 (Length: 489)
Name: NF17201_high_2
Description: NF17201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17201_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 430; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 11 - 473
Target Start/End: Original strand, 49944680 - 49945142
Alignment:
| Q |
11 |
cagagataacaacagtgtaaacacataccctcatcnnnnnnntcccttctttccacaatggagtgaagaaaggagaaaagcgtgattctttattagtaca |
110 |
Q |
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| T |
49944680 |
cagagataacaacagtgtaaacacataccctcatcaaaaaaatcccttctttccacaatggagtgaagaaaggagaaaagcgtgattcttcattagtaca |
49944779 |
T |
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| Q |
111 |
tttcaacctagacccacttacggaaacatggtgtatcctcaacaagtttacattttgacaacaaaaactaaaaacttgccttattgggcgtccatgtttc |
210 |
Q |
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| T |
49944780 |
tttcaacctagacccacttacggaaacatggtgtatcctcaacaagtttacattttgacaacaaaaactaaaaacttgccttattgggcgtccatgtttc |
49944879 |
T |
|
| Q |
211 |
gcagatacagtgcaccaccttttgcttttctgcaataatcttcttctctccaacaactccaaatgattgttactattgatagtgatagtgttgtaaactt |
310 |
Q |
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| T |
49944880 |
gcagatacagtgcaccaccttttgcttttctgcaataatcttcttctctccaacaactccaaatgattgttactattgatagtgatagtgttgtaaactt |
49944979 |
T |
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| Q |
311 |
tgaaagaagaatgaagcttgattccgaagaaagaggtgttcattatcttcttctccttctcagttccctaacgaagtgctactgcatttaggaaactgag |
410 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
49944980 |
tgaaagaagaatgaagcttgattccgaagaaagaggtgttcattatcttcttctccttctcagttccctaacgaattgctactgcatttaggaaactgag |
49945079 |
T |
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| Q |
411 |
aattttagaatccattctgatgtcacttttgagtgtgaaaaatgagaacttgtttggtttgaa |
473 |
Q |
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| T |
49945080 |
aattttagaatccattctgatgtcacttttgagtgtgaaaaatgagaacttgtttgttttgaa |
49945142 |
T |
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