View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17201_high_5 (Length: 340)
Name: NF17201_high_5
Description: NF17201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17201_high_5 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 9 - 272
Target Start/End: Original strand, 7952074 - 7952334
Alignment:
| Q |
9 |
gagatgaaaacgtaaggaagtatagttgagggacgaaaacgtatagattgttggttgtttggaccaaaatgaaacataaaaattaattagggaaccaacc |
108 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
7952074 |
gagacgaaaacgtaagaaagtatagttgagggacgaaaacgtatagattgttggttgtttggaccaaaatgaaacataaaaattaattaggggaccaacc |
7952173 |
T |
|
| Q |
109 |
gcccaattaaacctataccattatatataag-aaagaagtcaagtttattttatatataaatatagattacatctttcttgaccaataaacagcatatag |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |
|
|
| T |
7952174 |
gcccaattaaacctataccattatatataagcaaagaagtcaagtttattttatatataaatatagattaca----tcttgaccaataaacaacatatag |
7952269 |
T |
|
| Q |
208 |
ataattattaaatactcttttaataaaagaataataaatctctttttccgatgtcaatttagatg |
272 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
7952270 |
ataattattaaatactcttttaataaaagaataataaacctctttttccgatgtcaatttagatg |
7952334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University