View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17201_low_1 (Length: 920)
Name: NF17201_low_1
Description: NF17201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17201_low_1 |
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| [»] scaffold0039 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 442; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 442 - 911
Target Start/End: Original strand, 33805357 - 33805826
Alignment:
| Q |
442 |
gatatggatgtgtcacaatctttgagaagtaaggtattggtaaaaaggaagggtttttccttctttgtggaattaggttatgagaacctactagattatt |
541 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
33805357 |
gatatggatgtgtcacaatctttgagaaataaggtattggtaaaaaggaagggtttttccttctttgtggaattaggttatgagaacctaccagattatt |
33805456 |
T |
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| Q |
542 |
gttcacattgcaacgaaattggatactatttagagatatgtaaaaatgttagaaaggaaggaaatgaagagcatgctaattaaggaaccagtcaagccaa |
641 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33805457 |
gttcacattgcaacaaaattggatactatttagagatatgtaaaaatgttagaaaggaaggaaatgaagagcatgctaattaaggaaccagtcaagccaa |
33805556 |
T |
|
| Q |
642 |
agaaagcaataacaaaaacatagtatgtcagaaaggagcaggggaagtctgaaacagatcccattgtggtccctgagcagacaattgaaatacaacaaga |
741 |
Q |
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| T |
33805557 |
agaaagcaaaaacaaaaacataatatgtcagaaaggagcaggggaagtctcaaacagatcccattgtggtccctgagcagacaattgaaatacaacaaga |
33805656 |
T |
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| Q |
742 |
aagagatccaaacaaagggaaggccattatggtagttgagactaagaaggttagcaaagagatgaacatggagttcaataatgaaaaggcagaagatgct |
841 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
33805657 |
aagagatccaaacaaagggaaggccattatggtagttgagactaagaaggttagcaaagagatgaacatggagtttaataatgaaaaggcagaagatgct |
33805756 |
T |
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| Q |
842 |
gatgaatcttcttctgaaggttctgaatttgtagaagatattgagattagggaggaaaacattgatgatg |
911 |
Q |
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| T |
33805757 |
gatgaatcttcttctgaaggttctgaatttgtagaagatattgagattagggaggaaaacattgatgatg |
33805826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 17 - 433
Target Start/End: Original strand, 33804892 - 33805308
Alignment:
| Q |
17 |
acttacatgctaggatcatttaccctaaaggtgctacccctttaactgtattttccttgagaaacaaacttactgctcattggaaagatctagggcgatg |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33804892 |
acttacatgctaggatcatttaccctaaaggtgctacccctctaactgtattttccttgagaaacaaacttactgctcattggaaagatctagggcgatg |
33804991 |
T |
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| Q |
117 |
gggagttcaagttattaggaaaggattctatgaatttactttctccaacttagaagatctgaagagggtaatatccattggctcatggaatttgagtccc |
216 |
Q |
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| T |
33804992 |
gggagttcaagttattaggaaaggattctatgaatttactttctccaacttagaagatctgcagagggtaatatccattggctcatagaatttgagtccc |
33805091 |
T |
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| Q |
217 |
ggcttcatcaaattctttgcttggacgcgtgattatagccctaatacacgtcaaaatacttcagctcaagtatggctcaagatctatggtgtcccttagg |
316 |
Q |
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| T |
33805092 |
ggcttcatcaaattctttgcttggacgcgtgattatagccctaatacacgtcaaaatacttcagctcaagtatggctcaagatctatggtgtccctcagg |
33805191 |
T |
|
| Q |
317 |
agtattggcgcaagcggatactatttcctagtgcgagtagcattggtacacttatttgcattgatactgccactgctaagcctatgtgggagagaacttt |
416 |
Q |
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| T |
33805192 |
agtattggcgcaagcggatactatttcctagtgcgagtagcattggtacacttatttgcattgatactgccactgctaagcctatgtgggagagaacttt |
33805291 |
T |
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| Q |
417 |
tggccaatatgcaagaa |
433 |
Q |
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| T |
33805292 |
tggccaatatgcaagaa |
33805308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 524 - 581
Target Start/End: Original strand, 33805305 - 33805362
Alignment:
| Q |
524 |
agaacctactagattattgttcacattgcaacgaaattggatactatttagagatatg |
581 |
Q |
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| T |
33805305 |
agaacctaccagattattgttcacattgcaacaaaattggatactatttagagatatg |
33805362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0039 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0039
Description:
Target: scaffold0039; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 193 - 329
Target Start/End: Complemental strand, 45900 - 45764
Alignment:
| Q |
193 |
attggctcatggaatttgagtcccggcttcatcaaattctttgcttggacgcgtgattatagccctaatacacgtcaaaatacttcagctcaagtatggc |
292 |
Q |
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|||||||| |||||||||| || || ||||| || |||||||||||||| ||||||| |||||||||||| | ||||| || ||||||||||| ||| |
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| T |
45900 |
attggctcctggaatttgaatctaggtttcataaagttctttgcttggactcgtgattttagccctaatacccagcaaaacacctcagctcaagtttggg |
45801 |
T |
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| Q |
293 |
tcaagatctatggtgtcccttaggagtattggcgcaa |
329 |
Q |
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| T |
45800 |
tgaggttccatggtgttccacagaagtattggcgcaa |
45764 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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