View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17201_low_11 (Length: 267)
Name: NF17201_low_11
Description: NF17201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17201_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 10 - 253
Target Start/End: Complemental strand, 7948215 - 7947972
Alignment:
| Q |
10 |
tttgactaggtattttcacatgaggctgaggcgattacagttgagtttatttaatttacatgcatacgttaaatgatgtgctgtcacgttaatttgtact |
109 |
Q |
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| T |
7948215 |
tttgactaggtattttcacatgaggccgaggcgattacaattgagtttatttaatttacatgcatacgttaaatgatgtgttgtcacgtcaatttgtact |
7948116 |
T |
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| Q |
110 |
ataacaagaaattatgtgtatttattctagtgttattttaatctcttattaattttcctattaaacaacataaaatttgaagnnnnnnnctttctattaa |
209 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
7948115 |
ataacaagaaatcatgtgtatttattctagtgttattttaatctcttgttaattttcctattaaacaacataaaatttgaagtttttttctttctattaa |
7948016 |
T |
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| Q |
210 |
aactgagaccagtccaatatattttctaatattaatttaatttt |
253 |
Q |
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| T |
7948015 |
aactgagaccagtccaatatattttctaatattaatttaatttt |
7947972 |
T |
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