View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17201_low_14 (Length: 234)
Name: NF17201_low_14
Description: NF17201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17201_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 171; Significance: 6e-92; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 20 - 222
Target Start/End: Complemental strand, 33177699 - 33177498
Alignment:
| Q |
20 |
ttttccactatcaactactcatgaaccaggatagatctagagttttggattgcctgcaattcattcctctttgtattttgagtctgattgtgttgtttgg |
119 |
Q |
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| T |
33177699 |
ttttccactatca-ctactcatgaaccaggatagatctagagttttggattgcctgcaattcattcctctttgtactttgagtctgattgtgttgtttgg |
33177601 |
T |
|
| Q |
120 |
gaatttgaaaaaattgactattttttctctccaatctgatgattaagaattatttgattccattatgtttgacaaatatgagtcgaagaagcaatattct |
219 |
Q |
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| T |
33177600 |
gaatttgaaaaaattgactattttttctctccaatttgatgattgagaattatttgattcccttatgtttggcaaatatgagtcgaagaagcaatattat |
33177501 |
T |
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| Q |
220 |
tgg |
222 |
Q |
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||| |
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| T |
33177500 |
tgg |
33177498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 20 - 222
Target Start/End: Original strand, 44810021 - 44810223
Alignment:
| Q |
20 |
ttttccactatcaactactcatgaaccaggatagatctagagttttggattgcctgcaattcattcctctttgtattttgagtctgattgtgttgtttgg |
119 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44810021 |
ttttccactatcaactactcatgaatcaggatagatctagagttttggattgactgcaattcattcctctttgtattttgagtctgattgtgttgtttgg |
44810120 |
T |
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| Q |
120 |
gaatttgaaaaaattgactattttttctctccaatctgatgattaagaattatttgattccattatgtttgacaaatatgagtcgaagaagcaatattct |
219 |
Q |
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|||||||||||||||||||||||| |||||| ||| |||||||| |||||||||||||||||||||||||| |||||||||||| ||||||||||||| | |
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| T |
44810121 |
gaatttgaaaaaattgactattttctctctctaatttgatgattgagaattatttgattccattatgtttggcaaatatgagtccaagaagcaatattat |
44810220 |
T |
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| Q |
220 |
tgg |
222 |
Q |
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||| |
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| T |
44810221 |
tgg |
44810223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 20 - 188
Target Start/End: Complemental strand, 17852432 - 17852277
Alignment:
| Q |
20 |
ttttccactatcaactactcatgaaccaggatagatctagagttttggattgcctgcaattcattcctctttgtattttgagtctgattgtgttgtttgg |
119 |
Q |
| |
|
||||||||| ||||||||||||||| || ||||||||||| |||| |||||||| |||||||||||||||| ||||||||| |||| |||| ||||| |
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| T |
17852432 |
ttttccactctcaactactcatgaatcatgatagatctag----ttgggttgcctgcgattcattcctctttgttttttgagtcggattttgttttttgg |
17852337 |
T |
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| Q |
120 |
gaatttgaaaaaattgactattttttctctccaatctgatgattaagaattatttgattccattatgtt |
188 |
Q |
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||||||||||||||||| ||||||||| |||||||| ||||||||||||||| |||||||| |
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| T |
17852336 |
gaatttgaaaaaattga---------ctctccaatttgatgattgagaattatttgattctattatgtt |
17852277 |
T |
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