View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17201_low_3 (Length: 394)
Name: NF17201_low_3
Description: NF17201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17201_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 319; Significance: 1e-180; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 17 - 379
Target Start/End: Original strand, 5432888 - 5433251
Alignment:
| Q |
17 |
ttagcatgttctccttcatacacttatcaaaacactatcttgattatcagagactgtagcgaaaacactttattttttg-tcgggatcaatgtgttcttt |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| |
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| T |
5432888 |
ttagcatgttctccttcatacacttatcaaaacactattttgattatcagagactgtagcgaaaacacttttttttttggtcgggatcaatgtgttcttt |
5432987 |
T |
|
| Q |
116 |
cgaatcaaaacaaacatgacaccaccatcagtttcaacaccaagactgtgaggtataacatctaacaacaacaagtcttgaattttcttgtctccttcaa |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5432988 |
cgaatcaaaacaaacatgacaccaccatcagtttcaacaccaagactgtgaggtataacatctaacaacaacaagtcttgaattttcttgtctccttcaa |
5433087 |
T |
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| Q |
216 |
cactcaatattgctgcttgaaccgaggcatcatacaccacaacttcataagaattaatgcttttgcatggctctttgatttctccattgactctaataat |
315 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5433088 |
cactcaatatcgctgcttgaaccgaggcatcatacaccacaacttcataaggattaatgcttttgcatggctctttgatttctccattgactctaataat |
5433187 |
T |
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| Q |
316 |
ttccttgatttttacttatttttgcctcatccnnnnnnntttccagtgtctccatgcattgttt |
379 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
5433188 |
ttccttgatttttacttatttttgcctcatcctaaaatttttccagtgtctccatgcattgttt |
5433251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 17 - 311
Target Start/End: Complemental strand, 5446495 - 5446198
Alignment:
| Q |
17 |
ttagcatgttctccttcatacactt--atcaaaacactatcttgattatcagagactgtagcgaaaacactttatttttt-gtcgggatcaatgtgttct |
113 |
Q |
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||||||||||||||||||||||||| ||||||| |||||||||||||||| || || ||| ||| ||| ||| ||||| || ||||||| || |||| |
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| T |
5446495 |
ttagcatgttctccttcatacactttgatcaaaagactatcttgattatcacaggctatagagaatacattttcctttttcgtagggatcatagtattct |
5446396 |
T |
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| Q |
114 |
ttcgaatcaaaacaaacatgacaccaccatcagtttcaacaccaagactgtgaggtataacatctaacaacaacaagtcttgaattttcttgtctccttc |
213 |
Q |
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|| ||||||||||| ||||||||||||| | |||||||||||||||||| ||| |||||||| |||| |||||||||| ||||||||||||||||| |
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| T |
5446395 |
ttggaatcaaaacagacatgacaccacctttagtttcaacaccaagactaaaaggcataacatccaacagtaacaagtcttcgattttcttgtctccttc |
5446296 |
T |
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| Q |
214 |
aacactcaatattgctgcttgaaccgaggcatcatacaccacaacttcataagaattaatgcttttgcatggctctttgatttctccattgactctaa |
311 |
Q |
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| | ||||||||||||||||||| | ||| |||| ||||| |||||| || ||||||||||||||| |||||||||| ||| | |||||||||| |
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| T |
5446295 |
agtattcaatattgctgcttgaacagcggcgccataagccacagcttcatcaggattaatgcttttgcaaggctctttgacttcatcgttgactctaa |
5446198 |
T |
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