View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17201_low_7 (Length: 317)

Name: NF17201_low_7
Description: NF17201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17201_low_7
NF17201_low_7
[»] chr2 (1 HSPs)
chr2 (14-317)||(29473130-29473444)


Alignment Details
Target: chr2 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 14 - 317
Target Start/End: Original strand, 29473130 - 29473444
Alignment:
Q  14 tactgtatagaattgagctgaatttaggcactatgacactaactttcacatagtttca----------tattggaaatgattacatcaatgactcaacca 103  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||          ||||||||||||||||||||||||| ||||||    
T  29473130 tactgtatagaattgagctgaatttaggcactatggcactaactttcacatagtttcatattcattcatattggaaatgattacatcaatgacccaacca 29473229  T
Q  104 aaattcaattcccataatggtaggctcagcaacaatggcggagaattgtgatgatcctaacaaatccacacgtccttattctcnnnnnnnncattccaca 203  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||    
T  29473230 aaattaaattcccataatggtaggctcagcaacaatggcggagaattgtgatgatcctaacaaatccacacgtccttattctc-tttttttcattccaca 29473328  T
Q  204 cacaccatttagtcaaacac--atgatatagtaactgttcatnnnnnnnccacacattatggttctgattaatttcattacaacaatatgggccaaaaac 301  Q
    ||||||||||||||||||||  ||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||| |||| ||||||||    
T  29473329 cacaccatttagtcaaacacatatgatatagtaactgttcataaaaaaaccacacattatggttctgattaatttcattacaacaacatggaccaaaaac 29473428  T
Q  302 ataacaaacaaagtaa 317  Q
    ||||||||||||||||    
T  29473429 ataacaaacaaagtaa 29473444  T

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