View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17201_low_8 (Length: 295)
Name: NF17201_low_8
Description: NF17201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17201_low_8 |
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| [»] chr7 (8 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 267; Significance: 1e-149; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 295
Target Start/End: Original strand, 45270328 - 45270622
Alignment:
| Q |
1 |
ctaattgtgaatttttcaggtaccaatgctgcttctgggacgatattgcagtcctggataacaataccagtattcatattcacctgcggtgatccgtctg |
100 |
Q |
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|||| ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
45270328 |
ctaactgtgaatttttcagggaccaatgctgcttctgggatgatattgcagtcctggataacaataccagtattcatattcaccagcggtgatccgtctg |
45270427 |
T |
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| Q |
101 |
cgacaattacgttgtattcatttttatcataattgccttttctcacgatgatggtagagctttggatcaaggtagcagatgttccaaagatgaagtcaat |
200 |
Q |
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|||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
45270428 |
cgacaattacgttgtattcattatgatcataattgccttttctcacgatgatggtagagctttggatcaaggtggcagatgttccaaagatgaagtcaat |
45270527 |
T |
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| Q |
201 |
ggtaccggagataacacagttgcggtagaattgcctgttggtttgaacgtacaaagtgtcttggtaacctacgatatggcaacccaccaaagcag |
295 |
Q |
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| T |
45270528 |
ggtaccggagataacacagttgcggtagaattgcctgttggtttgaacgtacaaagtgtcttggtaacctacgatatggcaacccaccaaagcag |
45270622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 140 - 295
Target Start/End: Original strand, 45293577 - 45293732
Alignment:
| Q |
140 |
ttctcacgatgatggtagagctttggatcaaggtagcagatgttccaaagatgaagtcaatggtaccggagataacacagttgcggtagaattgcctgtt |
239 |
Q |
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|||| |||||||| |||||| |||||||||||| |||||||||||||||||||| |||| |||||| ||||||||||| |||||||||||||||||||| |
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| T |
45293577 |
ttcttacgatgatcgtagagtcttggatcaaggtggcagatgttccaaagatgaaatcaacggtaccagagataacacaattgcggtagaattgcctgtt |
45293676 |
T |
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| Q |
240 |
ggtttgaacgtacaaagtgtcttggtaacctacgatatggcaacccaccaaagcag |
295 |
Q |
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| T |
45293677 |
ggtttgaacgtacaaagtgtcttggtaacccaggatatggcaacccaccaaagcag |
45293732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 140 - 295
Target Start/End: Original strand, 45302537 - 45302692
Alignment:
| Q |
140 |
ttctcacgatgatggtagagctttggatcaaggtagcagatgttccaaagatgaagtcaatggtaccggagataacacagttgcggtagaattgcctgtt |
239 |
Q |
| |
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|||| |||||||| |||||| |||||||||||| |||||||||||||||||||| |||| |||||| ||||||||||| |||||||||||||||||||| |
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| T |
45302537 |
ttcttacgatgatcgtagagtcttggatcaaggtggcagatgttccaaagatgaaatcaacggtaccagagataacacaattgcggtagaattgcctgtt |
45302636 |
T |
|
| Q |
240 |
ggtttgaacgtacaaagtgtcttggtaacctacgatatggcaacccaccaaagcag |
295 |
Q |
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| T |
45302637 |
ggtttgaacgtacaaagtgtcttggtaacccaggatatggcaacccaccaaagcag |
45302692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 3 - 295
Target Start/End: Original strand, 45273862 - 45274149
Alignment:
| Q |
3 |
aattgtgaatttttcaggtaccaatgctgcttctgggacgatattgcagtcctggataacaataccagtattcatattcacctgcggtgatccgtctgcg |
102 |
Q |
| |
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|||||||||| |||| || | ||||||||||||||||| ||||||||| |||||||| |||||||||||||||| ||||| | ||||||||||||| |
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| T |
45273862 |
aattgtgaatctttctgggaacaatgctgcttctgggatgatattgcaatcctggatcacaataccagtattcaaattcatcgtgtctgatccgtctgcg |
45273961 |
T |
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| Q |
103 |
acaattacgttgtattcatttttatcataattgccttttctcacgatgatggtagagctttggatcaaggtagcagatgttccaaagatgaagtcaatgg |
202 |
Q |
| |
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|||| |||| ||| ||| || || ||||| || ||||| |||||| |||||||||||||||||||| ||||||||||||||||| || |
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| T |
45273962 |
gtaattgtgttgaattgccctttgccag----gc--tttcttacaatgattgtagagtgttggatcaaggtagcagatgatccaaagatgaagtcaacgg |
45274055 |
T |
|
| Q |
203 |
t-accggagataacacagttgcggtagaattgcctgttggtttgaacgtacaaagtgtcttggtaacctacgatatggcaacccaccaaagcag |
295 |
Q |
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| ||| |||| || ||| ||||||||| | ||||||||| ||||||| ||||| ||||||||||||| ||||||||||||||||||||||||| |
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| T |
45274056 |
ttaccagagacaagacaattgcggtagtactgcctgttgctttgaacatacaagctgtcttggtaacccacgatatggcaacccaccaaagcag |
45274149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 139 - 295
Target Start/End: Original strand, 45282236 - 45282392
Alignment:
| Q |
139 |
tttctcacgatgatggtagagctttggatcaaggtagcagatgttccaaagatgaagtcaatggtaccggagataacacagttgcggtagaattgcctgt |
238 |
Q |
| |
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||||| || ||||| |||||| |||||||||||||||||||| ||||||||||||||||| |||||| |||| || ||| ||||||||| | || |||| |
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| T |
45282236 |
tttcttacaatgattgtagagtgttggatcaaggtagcagatgatccaaagatgaagtcaacggtacccgagacaagacaattgcggtagtactgtctgt |
45282335 |
T |
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| Q |
239 |
tggtttgaacgtacaaagtgtcttggtaacctacgatatggcaacccaccaaagcag |
295 |
Q |
| |
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| T |
45282336 |
tgctttgaacatacaagctgtcttggtaacccacgatatggcaacccaccaaagcag |
45282392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 3 - 82
Target Start/End: Original strand, 45282106 - 45282185
Alignment:
| Q |
3 |
aattgtgaatttttcaggtaccaatgctgcttctgggacgatattgcagtcctggataacaataccagtattcatattca |
82 |
Q |
| |
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|||||||||| |||| || | ||||||||||||||||| ||||||||| |||||||| |||||||||||||||| ||||| |
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| T |
45282106 |
aattgtgaatctttctgggaacaatgctgcttctgggatgatattgcaatcctggatcacaataccagtattcaaattca |
45282185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 2 - 76
Target Start/End: Original strand, 45293445 - 45293519
Alignment:
| Q |
2 |
taattgtgaatttttcaggtaccaatgctgcttctgggacgatattgcagtcctggataacaataccagtattca |
76 |
Q |
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||||||||||| ||| ||| | |||||||||||||||||| ||||||||| | ||||| |||||||||||||||| |
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| T |
45293445 |
taattgtgaatctttgagggaacaatgctgcttctgggacaatattgcagccttggatcacaataccagtattca |
45293519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 2 - 76
Target Start/End: Original strand, 45302405 - 45302479
Alignment:
| Q |
2 |
taattgtgaatttttcaggtaccaatgctgcttctgggacgatattgcagtcctggataacaataccagtattca |
76 |
Q |
| |
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||||||||||| ||| ||| | |||||||||||||||||| ||||||||| | ||||| |||||||||||||||| |
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| T |
45302405 |
taattgtgaatctttgagggaacaatgctgcttctgggacaatattgcagccttggatcacaataccagtattca |
45302479 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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