View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17202_high_12 (Length: 444)

Name: NF17202_high_12
Description: NF17202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17202_high_12
NF17202_high_12
[»] chr2 (1 HSPs)
chr2 (4-444)||(25049195-25049637)


Alignment Details
Target: chr2 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 4 - 444
Target Start/End: Original strand, 25049195 - 25049637
Alignment:
Q  4 acagaggaaaaggtgaatgaagttatataataagagagtcacagatacatcaaacagattccaaaaccggttgaaagccacataacacaa--ttgtgagt 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  25049195 acagaggaaaaggtgaatgaagttatataataagagagtcacagatacatcaaacagattccaaaaccggttgaaagccacataacacaaaattgtgagt 25049294  T
Q  102 aaaagacaaaggaagaaagaagnnnnnnnctcataacatgagagccggtttcacagacggccagaagcaaccattcctaagccggctatatgtaatgtaa 201  Q
    ||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25049295 aaaagacaaaggaagaaagaagaaaaaaactcataacatgagagccggtttcacagacggccagaagcaaccattcctaagccggctatatgtaatgtaa 25049394  T
Q  202 tgaaattgccagcacaatcttttctaacctcattctttatccatatccctttaaattaccctcttcatccattccatgacgattaagacgtacgtatagc 301  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25049395 tgaaattgccagcacaatcttttctaacctcattctttatccatatccctttaaattaccctcttcatccattccatgacgattaagacgtacgtatagc 25049494  T
Q  302 aatattcatcttttgttttccatggcgaaactatcgcaacagcaaactcagaaaaacaatgcgagaaataacaataaccttaaagcaactaattccgtcg 401  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||    
T  25049495 aatattcatcttttgttttccatggcgaaactatcacaacagcaaactcagaaaaacaatgcaagaaataacaataaccttaaagcaactaataccgtcg 25049594  T
Q  402 ttgtcgacaacaaagtgaaaagaacaaggagaagtgtcccaag 444  Q
    |||| ||||||||||||||||||||||||||||||||||||||    
T  25049595 ttgttgacaacaaagtgaaaagaacaaggagaagtgtcccaag 25049637  T

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