View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17202_high_15 (Length: 425)
Name: NF17202_high_15
Description: NF17202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17202_high_15 |
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Alignment Details
Target: chr4 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 1 - 411
Target Start/End: Complemental strand, 43747308 - 43746898
Alignment:
| Q |
1 |
tgaaaccatttgcaaaccctctcctctatctgtaagttcaccccatcaaacgaaattcacatcaagaaactgaaccactagctcggaacacagagtttcc |
100 |
Q |
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| T |
43747308 |
tgaaaccatttgcaaaccctctcctctatctgtaagtgcaccccaacaaacaaaattcacatcaagaaactgaatcactagctccgaacacagagtttcc |
43747209 |
T |
|
| Q |
101 |
ttgcagaacacttttgcaaaagggtggtctacttaatgaagatacatgaacacaaattttttatcttgttctgctaacttcatagcttcattgaaacgac |
200 |
Q |
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| T |
43747208 |
ttgcagaacacgtttgcaaaagggtggtctactgaatgaagatacatgaacacaaatttttgatcttgttctgctaacttcatagcttcattgaaacgac |
43747109 |
T |
|
| Q |
201 |
aagcgtaaaagaagggatgtttgttgccatattgttgctcaaaattatcgtgaaaagcccattcttctggagctgctaaggaattttgtggttgtggagg |
300 |
Q |
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| T |
43747108 |
aagcgtaaaagaagggatgtttgttgccatattgttgctcaaaattatcgtgaaaagcccattcttctggagctgctaaggaattttgtggttgtggagg |
43747009 |
T |
|
| Q |
301 |
gtctaaaaattgtaatggaaagtttgcattttgatttcttcttcttcttcctattcctacaaagctcattatgctccgaggaaggcttgtcattcggcga |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43747008 |
gtctaaaaattgtaatggaaagtttgcattttgatttcttcttcttcttcctattcctacaaagctcattatgctccgaggaaggcttgtcattcggcga |
43746909 |
T |
|
| Q |
401 |
actatcctatg |
411 |
Q |
| |
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||||||||||| |
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| T |
43746908 |
actatcctatg |
43746898 |
T |
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