View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17202_high_19 (Length: 390)
Name: NF17202_high_19
Description: NF17202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17202_high_19 |
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Alignment Details
Target: chr2 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 18 - 339
Target Start/End: Original strand, 25049616 - 25049930
Alignment:
| Q |
18 |
gaacaaggagaagtgtcccaagagattctccaattcaacgtagctcaatatatagaggagtcactaggtttatacccttttaataatagatagatatata |
117 |
Q |
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| T |
25049616 |
gaacaaggagaagtgtcccaagagattctccaattcaacgtagctcaatatatagaggagtcactaggtttctacccttttaata-------gatatata |
25049708 |
T |
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| Q |
118 |
gatagattttcttttcatgcatggaacttctctcaactaaaatgaactgtttgattgatcaggcacagatggacaggccggtatgaagctcatttgtggg |
217 |
Q |
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| T |
25049709 |
gatagattttcttttcatgcatgaaacttctctcaactaaaatgaactgtttgattgatcaggcatagatggacaggccggtatgaagctcatttgtggg |
25049808 |
T |
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| Q |
218 |
acaagaattgttggaatgaatcgcaaaacaaaaaaggacgacaaggtttatagccatatccatcataatgcatatacttactaatttatctatatacatt |
317 |
Q |
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| T |
25049809 |
acaagaattgttggaatgaatcgcaaaacaaaaaaggacgacaaggtttatagccatatccatcataatgcatatacttactaatttatctatatacatt |
25049908 |
T |
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| Q |
318 |
agattaattatattgatcaagg |
339 |
Q |
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| T |
25049909 |
agattaattatattgatgaagg |
25049930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 3e-21; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 176 - 264
Target Start/End: Original strand, 54267034 - 54267122
Alignment:
| Q |
176 |
tcaggcacagatggacaggccggtatgaagctcatttgtgggacaagaattgttggaatgaatcgcaaaacaaaaaaggacgacaaggt |
264 |
Q |
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| T |
54267034 |
tcaggcaccgttggacaggccgatatgaagctcatttgtgggacaagaattgttggaatgagtctcagaacaagaaagggagacaaggt |
54267122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 199 - 264
Target Start/End: Original strand, 1229003 - 1229068
Alignment:
| Q |
199 |
tatgaagctcatttgtgggacaagaattgttggaatgaatcgcaaaacaaaaaaggacgacaaggt |
264 |
Q |
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| T |
1229003 |
tatgaagctcatttgtgggataagaattgctggaatgaatcacaaagcaagaaaggaagacaaggt |
1229068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 23 - 86
Target Start/End: Original strand, 54266838 - 54266901
Alignment:
| Q |
23 |
aggagaagtgtcccaagagattctccaattcaacgtagctcaatatatagaggagtcactaggt |
86 |
Q |
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| T |
54266838 |
aggaaaagtgtccctagaacttctccacctcaacgcagctcaatatacagaggagtcactaggt |
54266901 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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